Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F52 I0 R1
|
129 |
152.3 |
7640533 |
93.0% |
7105695 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,978 |
A→C |
24.4% |
intergenic (‑188/+120) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,978 | 0 | A | C | 24.4%
| 469.1
/ 145.0
| 235 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (74/87); new base C (44/2); total (146/89) |
| Fisher's exact test for biased strand distribution p-value = 1.33e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.40e-02 |
Only 100 of 240 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077
|
aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:85964/1‑100 (MQ=255)
aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:3606580/100‑1 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 1:564723/99‑1 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2170085/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1994346/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:3196072/100‑1 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 2:830180/100‑1 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:590897/1‑100 (MQ=255)
gacGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:2579282/3‑100 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:3371274/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2024779/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 1:2364407/100‑1 (MQ=37)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:2198857/100‑1 (MQ=37)
ggATGGCGCTGCACGCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:367745/100‑1 (MQ=25)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:1830443/100‑1 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:654093/100‑1 (MQ=37)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:1439088/100‑2 (MQ=37)
gcgcTGCACGCAGAGGCACAGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 1:511058/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATCCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 1:2011271/100‑1 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:935600/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:3026780/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:2084578/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTg > 2:3473030/1‑100 (MQ=21)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1254493/100‑1 (MQ=255)
gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑caa > 1:798010/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAAtt < 2:1885534/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCa > 1:2202194/1‑100 (MQ=255)
cacaGCGCCACCGGGTATAATAATTGTTGCCAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCCTATCCGGCCTAC‑AAAATCGTGccattt > 1:2654461/1‑93 (MQ=17)
caGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAAt < 2:1266067/100‑1 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACAtt < 2:2182920/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTg > 2:3005161/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGc < 2:247163/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGc < 2:1647400/100‑1 (MQ=255)
aCCGGGTATACACCTTGTTGACAAAGTCCGCTTTGTTTATCTCGGATGCGTCCTTAACGCCTTATCCGTCCTAC‑AAAATCGTGC‑AAATTCATTACATTGc < 1:313699/100‑1 (MQ=17)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑g < 1:2032926/100‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑Ga > 2:1992425/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g < 1:2800359/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g > 1:3224683/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g > 1:1271249/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g < 2:492490/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g < 1:1283176/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑g > 2:3218815/1‑100 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAgg > 1:3510846/1‑100 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAgg < 1:1917468/100‑1 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGc > 1:3800681/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGAt < 2:1501042/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGc < 1:3751427/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 1:2709829/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGTTAAGCg > 2:2423031/1‑97 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:2063265/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:2643108/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa > 2:3356334/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:838261/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1240099/100‑1 (MQ=255)
tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2726716/8‑100 (MQ=18)
cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGATCGTGC‑AAATTCAATATATTGCA‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:3669143/8‑100 (MQ=17)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCC‑AAATTCAATATATTGCA‑GA‑AA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2307935/7‑100 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:2451771/1‑100 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1548395/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTAT‑AAATTCAATGTATTGCA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2889443/4‑100 (MQ=25)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1530808/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1945101/1‑100 (MQ=255)
ggtcggataaggcgTTCACGCCGCATCCGGCCCAC‑AAAGTCTTGC‑AAAATCAATAAATTGCAGGA‑AC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2767944/11‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGC‑TAATTCAATATATTGCA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1737619/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1389603/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGC‑AAATTCAATATATTGC‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2116612/2‑100 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGC‑TAATTCAATATATTGCA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1362251/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGC‑AAATTCAATAAATTGCA‑‑A‑AT‑CAACATGTAGGCCGGATAAGCGCAGCGCATCAGGCa > 1:2571710/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGC‑TAATTCAATATATTGTG‑GG‑CT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCTCATCAGGCag > 1:2497197/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGC‑TAATTCAATATATTGCA‑GG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:1217899/1‑99 (MQ=18)
ctggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGC‑AAATTCAATAGATTGCA‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat < 2:2915479/92‑3 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGC‑AAATTCAATATATTGCA‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3558594/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGT‑AAATTCAATAAATTGAT‑CG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:105779/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTT‑AAATTCAATATATTGCA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1152417/9‑98 (MQ=21)
ccggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1799584/9‑100 (MQ=18)
ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGT‑AAATTCAATAAATTGAT‑CG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3438258/1‑98 (MQ=18)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑GA‑ATCCCTT‑‑CTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:3469626/8‑99 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGC‑AAACTCAATATATTGCA‑GAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:1803314/8‑97 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1475008/7‑98 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:1032296/7‑98 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:1381035/7‑98 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2235449/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTAT‑AAATTCAATGTATTGCA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:1859341/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGT‑AAATTCAATAAATTGAT‑CG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:557841/7‑100 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTT‑AAATTCAATATATTGCA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 2:1211845/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGA‑AAATTCAATACATTGCA‑AG‑AT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:732943/7‑96 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGC‑AAATTCAATAGATTGCA‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatag > 1:2915465/7‑96 (MQ=17)
gataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagttct > 1:2310443/6‑95 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3025232/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2341624/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2232917/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:1952107/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:3742334/100‑1 (MQ=255)
ggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGC‑AAACTCAATATATTGCA‑GAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttagcgtt > 2:881092/1‑94 (MQ=17)
cgTTTACGCCGCATCCGGCCTAC‑AAGATCGTGC‑AAATTCAACATATTGC‑‑CA‑CT‑CACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAattttacattt > 2:2714125/1‑94 (MQ=25)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:3673206/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2958997/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1401484/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:1704593/1‑99 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcn < 1:281638/100‑2 (MQ=255)
|
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
