Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F129 I0 R1 205 159.3 7901478 93.8% 7411586 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,156,590 C→A 17.2% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,156,5900CA17.2% 394.8 / 64.7 147intergenic (+72/‑33)yqhD/dkgAaldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
Reads supporting (aligned to +/- strand):  ref base C (52/68);  new base A (16/9);  total (69/78)
Fisher's exact test for biased strand distribution p-value = 7.81e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01

Only 100 of 154 total aligned reads displayed.

CCGCCGTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCT  >  NC_000913/3156491‑3156689
                                                                                                   |                                                                                                   
ccgccgTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGcc                                                                                                     <  1:496896/100‑1 (MQ=255)
 cgccgTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCt                                                                                                    <  2:521981/100‑1 (MQ=255)
   ccgTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGc                                                                                                  <  1:758466/100‑1 (MQ=255)
      tatataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTcn                                                                                               <  2:359312/100‑2 (MQ=255)
      tatataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTcc                                                                                               >  2:2933340/1‑100 (MQ=255)
      tatataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTcc                                                                                               <  2:2700649/100‑1 (MQ=255)
      tatataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTcc                                                                                               <  2:2396879/100‑1 (MQ=255)
       atataCGCAGCCGCCCGTGCAGCTTTTTACGCCTCAATCTTTCGTTATCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTcc                                                                                               <  2:2215629/99‑1 (MQ=255)
        tataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCgg                                                                                             <  1:928567/100‑1 (MQ=255)
        tataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCgg                                                                                             <  1:1590784/100‑1 (MQ=255)
         ataCGAAGCCGCCCTCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGt                                                                                            <  2:3452157/100‑1 (MQ=255)
         ataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGt                                                                                            >  1:1069372/1‑100 (MQ=255)
         ataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGt                                                                                            <  2:1146911/100‑1 (MQ=255)
         ataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGt                                                                                            >  1:3907756/1‑100 (MQ=255)
         ataCGAAGCCGCACGCTAAGCTTTTTACGACTCAAACTTTCGTTTTCGGGCAGTTCGTCCAGACTTAAGTTAACAACACCTCACCGGAGCCTGCTCCGGt                                                                                            <  2:1894610/100‑1 (MQ=255)
          taCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTg                                                                                           <  1:1655678/100‑1 (MQ=255)
          taCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTg                                                                                           <  1:142971/100‑1 (MQ=255)
          taCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTg                                                                                           >  2:1188231/1‑100 (MQ=255)
           aCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGa                                                                                          <  1:3167806/100‑1 (MQ=255)
            cGAAGCCGCCCGCTAAGCTTTTTACGCCTCGAACTTTCGTTTTCGGACATTTCGTCCAGACTTAAGTTCACAACACCGCACCGGAGCCTGCTCCGGTGAg                                                                                         <  2:736194/100‑1 (MQ=255)
            cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTGGTTTTCGGGCATTTCCTCCAGACGTAATTTCACGACACCTCACCGGAGCAGGCTCCGGTGa                                                                                          <  1:494442/99‑1 (MQ=255)
            cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAg                                                                                         >  2:2039327/1‑100 (MQ=255)
            cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAg                                                                                         >  1:2152526/1‑100 (MQ=255)
            cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAg                                                                                         <  1:1512160/100‑1 (MQ=255)
             gAAGCCGCCCGCTAAGCTTTTTACGCCTCAATCTGTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAGCACCTCACCGGAGCCTGCTCCGGTGAgn                                                                                        <  1:1123097/100‑2 (MQ=255)
             gAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAgg                                                                                        <  2:2842594/100‑2 (MQ=255)
              aaGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGtt                                                                                       <  1:384058/100‑1 (MQ=255)
                gccgccCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAggtgt                                                                                     <  2:3907726/100‑5 (MQ=39)
                 ccgcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCat                                                                                    >  1:2989824/1‑100 (MQ=255)
                  cgcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCata                                                                                   <  2:333447/100‑1 (MQ=255)
                    cccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCAtata                                                                                 <  1:306950/100‑1 (MQ=255)
                      cgcTAATCTTTTTACGCCTCGAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACACCACCTCACCGGAGCATGCTCCGGTGAggtgttgtgaa                                                                               <  2:1373739/100‑11 (MQ=37)
                      cgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATaaa                                                                               >  1:1300307/1‑100 (MQ=255)
                        cTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAagg                                                                             <  1:2368430/100‑1 (MQ=255)
                        cTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAagg                                                                             >  2:1007783/1‑100 (MQ=255)
                         tAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAagga                                                                            >  2:1109688/1‑100 (MQ=255)
                          aaGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggag                                                                           <  2:3592874/100‑1 (MQ=255)
                          aaGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggag                                                                           <  1:3823386/100‑1 (MQ=255)
                            gcgttttACGCCTGAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggag                                                                           <  2:3352387/95‑1 (MQ=255)
                            gCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAggagga                                                                         >  1:3581319/1‑100 (MQ=255)
                              tttttACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAAc                                                                       >  2:1408213/1‑100 (MQ=255)
                                  tACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTAt                                                                   >  1:170868/1‑100 (MQ=255)
                                     gCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGc                                                                <  1:1601187/100‑1 (MQ=255)
                                     gCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGc                                                                <  2:3577685/100‑1 (MQ=255)
                                      ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                               >  1:3908091/1‑100 (MQ=255)
                                      ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                               >  1:3423860/1‑100 (MQ=255)
                                      ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                               >  1:496948/1‑100 (MQ=255)
                                      ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                               <  1:2429740/100‑1 (MQ=255)
                                        tCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTaa                                                             >  2:2330318/1‑100 (MQ=255)
                                          aaaCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATc                                                           <  1:1418143/100‑1 (MQ=255)
                                           aaCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATcc                                                          >  1:3624199/1‑100 (MQ=255)
                                            aCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCa                                                         >  1:2217966/1‑100 (MQ=255)
                                            aCTTTCGGTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGATCCTGCTCCGGTTAGTTCATATAAAGGAGGAACGTATGGCTAATCCa                                                         <  2:2324265/100‑1 (MQ=255)
                                             cTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCaa                                                        >  2:3866183/1‑100 (MQ=255)
                                               ttCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAcc                                                      <  1:3431884/100‑1 (MQ=255)
                                                tCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCg                                                     <  2:1778715/100‑1 (MQ=255)
                                                  gTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCGCCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGtt                                                   <  2:283738/100‑1 (MQ=255)
                                                  gTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGtt                                                   >  1:1159602/1‑100 (MQ=255)
                                                   ttttCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGtta                                                  <  1:3898024/100‑1 (MQ=255)
                                                      tCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGTAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGttatta                                               >  2:3755948/1‑100 (MQ=255)
                                                       cGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTaa                                              >  1:3132483/1‑100 (MQ=255)
                                                        gggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAg                                             <  2:3464767/100‑1 (MQ=255)
                                                        gggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAg                                             <  1:2703489/100‑1 (MQ=255)
                                                         ggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATGTAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGc                                            <  1:3299894/100‑1 (MQ=255)
                                                           cATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTa                                          >  1:2206857/1‑100 (MQ=255)
                                                                   ccAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATgg                                  <  2:2143039/100‑1 (MQ=255)
                                                                    cAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGc                                 >  2:1358018/1‑100 (MQ=255)
                                                                      gACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCaa                               <  2:2002321/100‑1 (MQ=255)
                                                                      gACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCaa                               >  2:2983943/1‑100 (MQ=255)
                                                                         ttAAGTTCACAACACCACACCGGAGCCTGCTCCGGTGAGATCATATAAATGAAGCACGTAAGGCGAAATAAACCGTTATTAAGCAACAAGAAGGCaaag                             >  2:3832155/1‑97 (MQ=255)
                                                                           aaGTTCACAGCACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCa                          <  2:1124380/100‑1 (MQ=255)
                                                                            aGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCAt                         >  2:390106/1‑100 (MQ=255)
                                                                             gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                        >  1:3944473/1‑100 (MQ=255)
                                                                             gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                        <  1:2095180/100‑1 (MQ=255)
                                                                             gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                        >  1:2583220/1‑100 (MQ=255)
                                                                              ttCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGc                       <  1:330392/100‑1 (MQ=255)
                                                                                cacaACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGccc                     <  1:1515651/100‑1 (MQ=255)
                                                                                cacaACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGccc                     >  2:3757929/1‑100 (MQ=255)
                                                                                  caacaCCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAACGTTATTAAGCTACAGGATGGCAATGTCATGCCCCa                   >  2:1547760/1‑100 (MQ=255)
                                                                                       ccTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTgg              >  1:1854221/1‑100 (MQ=255)
                                                                                       ccTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTgg              >  1:3750960/1‑100 (MQ=255)
                                                                                       acTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTgg              >  1:2382464/2‑100 (MQ=255)
                                                                                       acTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATCTCATGCCCCAGCTgg              >  1:3892057/2‑100 (MQ=255)
                                                                                        cTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg             >  1:2594880/1‑100 (MQ=255)
                                                                                         tCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGa            >  2:2896430/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGCACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCCTGCCCCAGCTGGGAc           >  1:1234887/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc           >  2:3126282/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc           >  2:107920/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc           >  1:2971457/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc           >  1:1721544/1‑100 (MQ=255)
                                                                                          cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc           >  2:1762366/1‑100 (MQ=255)
                                                                                            ccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACt          >  2:1963523/1‑99 (MQ=255)
                                                                                            ccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTg         <  1:1858130/100‑1 (MQ=255)
                                                                                            ccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTg         >  1:1021732/1‑100 (MQ=255)
                                                                                            ccGGAGCCTGCTCCGGTGAGATCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGCGACt          >  2:1680935/1‑99 (MQ=255)
                                                                                              ggAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTggg       <  2:1651019/100‑1 (MQ=255)
                                                                                               gAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGc      >  2:1046209/1‑100 (MQ=255)
                                                                                                   cTGCTCCGGTTAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATCGCCATGTCATGCCCCAGCTGGGACTGGGCGTCt  <  2:2593266/100‑1 (MQ=255)
                                                                                                   cTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCt  >  2:1170279/1‑100 (MQ=255)
                                                                                                   cTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCt  >  2:702829/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CCGCCGTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCT  >  NC_000913/3156491‑3156689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A