mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 83,590 | G→T | 15.5% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,881 | A→G | 15.5% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 15.6% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 15.6% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 120,154 | Δ1 bp | 15.7% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 15.9% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| JC | 147,727 | Δ12 bp | 100% | coding (760‑771/903 nt) | yadD → | transposase_31 family protein |
| RA | 151,519 | A→C | 17.7% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 17.9% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 175,145 | Δ1 bp | 16.7% | coding (39/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 175,150:1 | +G | 17.1% | coding (44/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 217,044 | A→G | 15.1% | intergenic (‑41/+13) | yaeF ← / ← proS | putative lipoprotein/prolyl‑tRNA synthetase |
| RA | 252,589 | G→C | 20.2% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 18.1% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 292,302 | C→G | 15.1% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 314,255 | T→C | 15.5% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 16.7% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 443,022 | G→A | 15.3% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 15.7% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 454,853 | T→C | 17.5% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 17.7% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 478,750 | C→T | 19.1% | intergenic (‑133/+31) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,757 | T→C | 18.3% | intergenic (‑140/+24) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,759 | A→G | 18.4% | intergenic (‑142/+22) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 480,236 | C→G | 15.1% | E25Q (GAG→CAG) | hha ← | modulator of gene expression, with H‑NS |
| RA | 569,160 | G→T | 16.1% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 16.6% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 595,519 | T→A | 16.6% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 16.9% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 657,531 | T→G | 18.2% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 17.8% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 17.6% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 710,170 | C→T | 20.1% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 19.5% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 721,004 | T→A | 16.6% | intergenic (+164/+52) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,006 | T→A | 18.0% | intergenic (+166/+50) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,009 | T→A | 17.0% | intergenic (+169/+47) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,011 | T→A | 16.8% | intergenic (+171/+45) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 857,576 | T→C | 16.3% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 16.7% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 16.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 922,316:1 | +C | 18.1% | intergenic (+23/+50) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 1,015,912 | T→A | 16.5% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,143,998 | C→T | 100% | G124S (GGT→AGT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,211,610 | A→G | 15.0% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 15.2% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 15.2% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,233,154 | T→A | 15.7% | intergenic (‑124/+22) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| JC JC | 1,293,033 | IS1 (+) +9 bp | 100% | intergenic (‑111/‑486) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,306,787 | G→A | 17.7% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 17.7% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,311,830 | A→G | 21.8% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 21.5% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,327,213 | C→T | 15.3% | T121I (ACC→ATC) | rluB → | 23S rRNA pseudouridine(2605) synthase |
| RA | 1,370,026 | T→A | 15.6% | intergenic (+23/‑190) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,370,029 | T→A | 16.0% | intergenic (+26/‑187) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,441,833 | G→C | 17.9% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 18.2% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 18.6% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,520,080 | G→T | 15.1% | intergenic (+16/‑182) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,520,083 | A→C | 15.0% | intergenic (+19/‑179) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,533,713 | A→C | 15.8% | F47V (TTT→GTT) | yddH ← | flavin reductase like‑protein |
| RA | 1,620,224 | C→G | 15.8% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 16.0% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,674,955 | A→T | 15.5% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 15.7% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,689,817 | C→A | 16.5% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 15.0% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,703,251 | A→T | 16.0% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 16.0% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,736,097 | T→A | 17.9% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 18.5% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,764,687 | T→C | 15.4% | intergenic (‑301/+247) | sufA ← / ← ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| RA | 1,764,701 | G→A | 15.7% | intergenic (‑315/+233) | sufA ← / ← ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| RA | 1,856,333 | T→G | 23.3% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 23.2% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,865,682 | G→C | 17.1% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,926,882 | C→A | 15.5% | G653V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,950,296:1 | +C | 17.6% | coding (227/1773 nt) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,302 | Δ1 bp | 18.4% | coding (221/1773 nt) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,306 | C→G | 18.7% | G73R (GGC→CGC) | aspS ← | aspartyl‑tRNA synthetase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,985,112 | C→G | 16.7% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,999,231 | T→A | 16.6% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,009,731 | A→G | 15.5% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 16.7% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 16.7% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,028,158 | G→C | 19.3% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 18.7% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 18.0% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,032,336 | G→C | 17.2% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,081,688 | A→T | 15.4% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,140,400 | G→A | 17.1% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 17.0% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,286,311 | C→G | 15.1% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 15.4% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 15.1% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,304,649 | C→T | 17.4% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 15.4% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,326,750 | C→G | 15.1% | F214L (TTC→TTG) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,326,752 | G→C | 15.4% | S215T (AGT→ACT) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,412,911 | G→T | 15.5% | A74A (GCC→GCA) | yfbV ← | UPF0208 family inner membrane protein |
| RA | 2,412,914 | A→C | 15.4% | V73V (GTT→GTG) | yfbV ← | UPF0208 family inner membrane protein |
| RA | 2,449,607:1 | +G | 15.0% | coding (443/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,615 | C→G | 18.4% | G145G (GGG→GGC) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,616 | C→G | 19.0% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,624 | Δ1 bp | 18.1% | coding (426/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,519,222 | T→G | 16.7% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 16.3% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 16.7% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,560,317 | A→C | 15.3% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 15.7% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 16.2% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 15.4% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,596,874 | Δ1 bp | 16.1% | intergenic (‑137/+31) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,879:1 | +G | 16.9% | intergenic (‑142/+26) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,653,367 | G→A | 19.0% | intergenic (+28/+790) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,653,372 | T→C | 18.1% | intergenic (+33/+785) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,772,226 | C→T | 15.2% | pseudogene (841/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,772,227 | A→T | 15.2% | pseudogene (840/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,772,236 | A→T | 15.5% | pseudogene (831/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,772,237 | A→G | 15.6% | pseudogene (830/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,796,375 | T→A | 15.8% | I138F (ATT→TTT) | ygaU ← | uncharacterized protein |
| RA | 2,866,903 | C→T | 100% | E217K (GAG→AAG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,917,345 | G→A | 100% | G763G (GGG→GGA) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,971,151 | T→C | 15.4% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 16.0% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 16.2% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,980,742 | A→G | 15.2% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 15.7% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,993,889 | T→A | 19.6% | intergenic (+33/‑50) | ygeI → / → pbl | uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family |
| RA | 3,057,140 | A→G | 15.9% | intergenic (‑191/+38) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 15.0% | intergenic (‑196/+33) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,156,590 | C→A | 17.2% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 15.9% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,202,003 | G→C | 17.0% | G38A (GGC→GCC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,009 | A→T | 16.2% | Q40L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,012 | A→T | 16.2% | Q41L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,309,009 | C→T | 15.7% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 15.4% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,322,698 | A→G | 15.2% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 15.3% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 15.6% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 15.8% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,352,539 | C→T | 17.1% | A163T (GCT→ACT) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,471,357 | C→T | 21.1% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 20.0% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 20.1% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,512,309 | G→C | 15.2% | V12V (GTC→GTG) | yhfZ ← | putative DNA‑binding transcriptional regulator |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,566,544 | C→A | 100% | S13I (AGC→ATC) | glgP ← | glycogen phosphorylase |
| RA | 3,657,599 | T→A | 17.4% | intergenic (+32/‑767) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,601 | G→C | 16.7% | intergenic (+34/‑765) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,603 | T→A | 17.6% | intergenic (+36/‑763) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,705,970 | G→A | 29.2% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,971 | C→A | 29.1% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,978 | A→C | 26.8% | intergenic (‑188/+120) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 33.7% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 33.7% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,028 | T→C | 18.6% | intergenic (‑238/+70) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,048 | G→T | 32.5% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,714,163:1 | +T | 16.1% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 15.7% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,891,502 | C→G | 16.5% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 15.1% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,918,291 | C→T | 17.8% | intergenic (‑26/+25) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,296 | C→T | 16.8% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,299 | A→G | 16.8% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,304 | A→G | 16.6% | intergenic (‑39/+12) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,981,102 | T→A | 15.4% | V72V (GTT→GTA) | yifK → | putative APC family amino acid transporter |
| RA | 4,027,058 | C→A | 63.9% | R178S (CGT→AGT) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,049,986 | G→T | 15.6% | intergenic (+234/+147) | polA → / ← yihA | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein |
| RA | 4,088,091 | G→C | 16.9% | intergenic (+34/+16) | yiiG → / ← frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,110,719 | G→C | 17.2% | intergenic (+34/+21) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,110,721 | A→T | 17.3% | intergenic (+36/+19) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,113,473 | T→C | 20.6% | L61L (TTG→CTG) ‡ | uspD → | stress‑induced protein |
| RA | 4,113,474 | T→A | 20.7% | L61* (TTG→TAG) ‡ | uspD → | stress‑induced protein |
| RA | 4,113,475 | G→A | 20.8% | L61L (TTG→TTA) ‡ | uspD → | stress‑induced protein |
| RA | 4,171,557 | C→G | 23.7% | intergenic (+13/‑80) | rrlB → / → rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| RA | 4,171,570:1 | +T | 29.2% | intergenic (+26/‑67) | rrlB → / → rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 16.8% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 15.6% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,196,331 | C→G | 100% | intergenic (‑232/+1) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 4,227,550 | G→A | 19.3% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 19.0% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,560 | T→C | 18.9% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,261,358 | T→A | 15.9% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 15.7% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,296,060 | C→T | 24.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,356,445 | A→T | 18.0% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 17.9% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 15.9% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 15.3% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,426,592 | T→A | 16.5% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,520,500 | Δ1 bp | 19.0% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 19.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,531,118 | Δ1 bp | 15.3% | coding (534/1122 nt) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
| RA | 4,608,604 | C→G | 17.1% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,608,607 | C→G | 17.0% | I141M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| JC | 4,628,231 | Δ14 bp | 71.6% | coding (917‑930/1233 nt) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 17 (0.130) | 10/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 111592 | NA (NA) | 12 (0.090) | 11/164 | NT | NA | noncoding (163/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | = 111625 | NA (NA) | noncoding (196/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 208355 | 109 (0.770) | 19 (0.150) | 13/164 | NT | 15.6% | coding (3230/3483 nt) | dnaE | DNA polymerase III alpha subunit |
| ? | NC_000913 | = 208370 | 106 (0.820) | coding (3245/3483 nt) | dnaE | DNA polymerase III alpha subunit | |||||
| * | ? | NC_000913 | 216059 = | NA (NA) | 26 (0.200) | 9/164 | NT | 17.4% | noncoding (33/111 nt) | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 216089 = | 123 (0.950) | noncoding (63/111 nt) | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 47 (0.360) | 14/164 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 48 (0.360) | 16/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 29 (0.220) | 14/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 46 (0.350) | 12/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 51 (0.390) | 12/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228022 | NA (NA) | 26 (0.200) | 9/164 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 50 (0.370) | 18/170 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 31 (0.240) | 13/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228721 = | NA (NA) | 56 (0.430) | 11/166 | NT | NA | intergenic (+59/‑35) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228745 = | NA (NA) | intergenic (+83/‑11) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 258341 | NA (NA) | 13 (0.100) | 5/166 | NT | NA | noncoding (335/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 279558 | NA (NA) | noncoding (373/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 28 (0.220) | 11/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 22 (0.170) | 8/164 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 25 (0.200) | 14/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 16 (0.120) | 8/170 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 32 (0.230) | 13/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 12 (0.100) | 8/158 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 37 (0.280) | 16/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 19 (0.140) | 9/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 26 (0.210) | 11/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 343971 = | 126 (0.890) | 19 (0.150) | 13/158 | NT | 15.1% | intergenic (+38/‑205) | yahK/yahL | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein |
| ? | NC_000913 | 344009 = | 102 (0.810) | intergenic (+76/‑167) | yahK/yahL | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein | |||||
| * | ? | NC_000913 | = 349876 | 119 (0.840) | 22 (0.170) | 6/164 | NT | 16.7% | noncoding (272/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349938 | NA (NA) | noncoding (334/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 377335 = | NA (NA) | 17 (0.130) | 8/164 | NT | NA | noncoding (1/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 377368 = | NA (NA) | noncoding (34/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 49 (0.380) | 14/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 57 (0.430) | 14/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 15 (0.110) | 8/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 501448 = | NA (NA) | 17 (0.130) | 10/164 | NT | NA | noncoding (5/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 501478 = | NA (NA) | noncoding (35/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 580768 | 127 (0.900) | 21 (0.180) | 10/146 | NT | 17.1% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 100 (0.870) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 591858 = | 111 (0.790) | 19 (0.150) | 7/162 | NT | 15.3% | coding (1321/2238 nt) | nfrB | bacteriophage N4 receptor, inner membrane subunit |
| ? | NC_000913 | 591887 = | 109 (0.850) | coding (1292/2238 nt) | nfrB | bacteriophage N4 receptor, inner membrane subunit | |||||
| * | ? | NC_000913 | 729981 = | NA (NA) | 4 (0.030) | 10/168 | NT | NA | coding (399/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 730006 = | NA (NA) | coding (424/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 20 (0.150) | 10/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 734728 = | NA (NA) | 30 (0.220) | 11/170 | NT | 35.5% | pseudogene (596/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 734759 = | 57 (0.400) | pseudogene (627/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | 837541 = | NA (NA) | 5 (0.040) | 4/166 | NT | NA | noncoding (3/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 837571 = | NA (NA) | noncoding (33/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 1040546 | NA (NA) | 11 (0.090) | 9/158 | NT | NA | noncoding (4/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1040578 | NA (NA) | noncoding (36/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 1041989 | NA (NA) | 10 (0.080) | 6/168 | NT | NA | noncoding (5/34 nt) | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1042017 | NA (NA) | noncoding (33/34 nt) | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1062411 = | NA (NA) | 15 (0.110) | 9/166 | NT | NA | noncoding (5/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 1062444 = | NA (NA) | noncoding (38/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 1207790 = | 3 (0.020) | 107 (0.930) | 68/146 | NT | 98.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 1 (0.010) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 2 (0.010) | 85 (0.740) | 59/146 | NT | 98.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 1 (0.010) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1269275 | NA (NA) | 29 (0.230) | 11/162 | NT | 21.3% | coding (1/108 nt) | ldrA | toxic polypeptide, small |
| ? | NC_000913 | = 1269313 | 118 (0.840) | intergenic (‑38/+390) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | 1269811 = | 126 (0.890) | 23 (0.180) | 7/162 | NT | 17.0% | intergenic (‑1/+427) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1269849 = | 110 (0.860) | intergenic (‑39/+389) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 132 (0.980) | 80/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1432763 = | NA (NA) | 12 (0.090) | 6/168 | NT | NA | coding (353/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | NC_000913 | 1432785 = | NA (NA) | coding (375/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 59 (0.840) +44 bp |
11/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1996046 = | 117 (0.830) | 21 (0.170) | 9/154 | NT | 17.6% | intergenic (+4/+64) | yecF/sdiA | DUF2594 family protein/quorum‑sensing transcriptional activator |
| ? | NC_000913 | 1996081 = | 95 (0.780) | intergenic (+39/+29) | yecF/sdiA | DUF2594 family protein/quorum‑sensing transcriptional activator | |||||
| * | ? | NC_000913 | 2139702 = | NA (NA) | 14 (0.110) | 9/164 | NT | NA | noncoding (1/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2139735 = | NA (NA) | noncoding (34/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2146653 | NA (NA) | 10 (0.080) | 8/164 | NT | NA | noncoding (54/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2146683 | NA (NA) | noncoding (84/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2236534 = | NA (NA) | 8 (0.060) | 5/164 | NT | NA | noncoding (1/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 2236564 = | NA (NA) | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 2270096 | 109 (0.770) | 20 (0.160) | 13/158 | NT | 15.1% | coding (118/567 nt) | mepS | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase |
| ? | NC_000913 | = 2270134 | 129 (1.030) | coding (156/567 nt) | mepS | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase | |||||
| * | ? | NC_000913 | = 2366373 | 88 (0.620) | 17 (0.130) | 13/164 | NT | 16.3% | coding (446/1140 nt) | arnB | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 2366396 | 94 (0.720) | coding (469/1140 nt) | arnB | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 2539674 | NA (NA) | 13 (0.100) | 8/164 | NT | NA | intergenic (‑91/+43) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit |
| ? | NC_000913 | = 2539688 | NA (NA) | intergenic (‑105/+29) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 9 (0.070) | 5/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 51 (0.380) | 15/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2729452 | NA (NA) | 23 (0.180) | 7/158 | NT | NA | intergenic (‑8/+164) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2729474 | NA (NA) | intergenic (‑30/+142) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2794028 = | NA (NA) | 12 (0.090) | 7/166 | NT | NA | noncoding (1/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 2794059 = | NA (NA) | noncoding (32/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 2794135 | NA (NA) | 11 (0.080) | 10/168 | NT | NA | noncoding (108/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 2794163 | NA (NA) | noncoding (136/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 2837464 | NA (NA) | 19 (0.150) | 10/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| ? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3114511 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (134/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 3114541 | NA (NA) | noncoding (164/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 3313290 | NA (NA) | 13 (0.100) | 6/164 | NT | NA | noncoding (39/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3313328 | NA (NA) | noncoding (77/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3336878 = | NA (NA) | 9 (0.070) | 4/168 | NT | NA | intergenic (‑75/+85) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component |
| ? | NC_000913 | 3336905 = | NA (NA) | intergenic (‑102/+58) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 22 (0.170) | 9/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3493765 | NA (NA) | 14 (0.110) | 6/162 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3493775 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 10 (0.080) | 8/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 19 (0.140) | 7/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3613601 = | 145 (1.030) | 30 (0.240) | 14/158 | NT | 19.4% | intergenic (+45/‑66) | acpT/nikA | 4'‑phosphopantetheinyl transferase/nickel/heme ABC transporter periplasmic binding protein |
| ? | NC_000913 | 3613631 = | 120 (0.960) | intergenic (+75/‑36) | acpT/nikA | 4'‑phosphopantetheinyl transferase/nickel/heme ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3619878 = | NA (NA) | 14 (0.110) | 5/160 | NT | 100% | coding (687/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619892 = | 0 (0.000) | coding (701/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 28 (0.210) | 14/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3674441 | NA (NA) | 14 (0.110) | 6/164 | NT | NA | noncoding (61/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3674473 | NA (NA) | noncoding (93/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3765531 = | NA (NA) | 50 (0.380) | 10/168 | NT | 100% | coding (3349/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765547 = | 0 (0.000) | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3898629 = | NA (NA) | 17 (0.130) | 10/162 | NT | NA | intergenic (+20/+42) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
| ? | NC_000913 | 3898659 = | NA (NA) | intergenic (+50/+12) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase | |||||
| * | ? | NC_000913 | = 3946822 | NA (NA) | 32 (0.230) | 10/174 | NT | 20.4% | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040683 | 128 (0.910) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 4035360 | NA (NA) | 34 (0.260) | 11/166 | NT | 100% | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035384 | 0 (0.000) | intergenic (+231/‑147) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4171607 | 24 (0.170) | 105 (0.800) | 14/166 | NT | 82.4% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4209894 = | NA (NA) | 9 (0.070) | 5/156 | NT | 100% | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | 4209912 = | 0 (0.000) | intergenic (+63/‑131) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4266888 = | NA (NA) | 14 (0.110) | 7/164 | NT | NA | noncoding (1/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4266918 = | NA (NA) | noncoding (31/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4306827 = | 146 (1.030) | 23 (0.190) | 13/156 | NT | 16.0% | intergenic (‑230/+43) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| ? | NC_000913 | 4306864 = | 114 (0.920) | intergenic (‑267/+6) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase | |||||
| * | ? | NC_000913 | 4344813 = | NA (NA) | 19 (0.150) | 11/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||