Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F129 I0 R1
|
205 |
159.3 |
7901478 |
93.8% |
7411586 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,171,557 |
C→G |
23.7% |
intergenic (+13/‑80) |
rrlB → / → rrfB |
23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,171,557 | 0 | C | G | 23.7%
| 252.4
/ 89.4
| 142 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| Reads supporting (aligned to +/- strand): ref base C (19/83); new base G (2/27); total (22/120) |
| Fisher's exact test for biased strand distribution p-value = 1.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-02 |
Only 100 of 142 total aligned reads displayed.
CGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC > NC_000913/4171503‑4171655
|
cGTTGAGCTAATCGGTACTAATTAACCCTGAGGCTTAACCTTACAACGTCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAA < 2:486253‑M1/100‑1 (MQ=255)
cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAA < 1:1673055‑M1/100‑1 (MQ=255)
cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAA < 1:1678990‑M1/100‑1 (MQ=255)
cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAA > 2:3699533‑M1/1‑100 (MQ=255)
cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAACTGTTTTGGCGG‑A‑TGAAAGAAGATTTTCAGCCTGATACAGATTAAA > 2:425019‑M1/1‑100 (MQ=255)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAAT > 1:3233641‑M1/1‑100 (MQ=255)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAAT > 1:1484505‑M1/1‑100 (MQ=255)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAAT > 2:2363510‑M1/1‑100 (MQ=255)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAAT > 2:2135617‑M1/1‑100 (MQ=255)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCGGATACAGAATAAAT > 2:937003‑M1/1‑100 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGTTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 1:3827557‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 1:1028382‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 2:3108395‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 1:846854‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 1:227036‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 2:536375‑M1/100‑1 (MQ=255)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATC < 1:1165692‑M1/100‑1 (MQ=255)
tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCA < 2:3630693‑M1/100‑1 (MQ=255)
gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAATCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGACACAGATTAAATCAG > 2:2301235‑M1/1‑100 (MQ=255)
gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAG < 1:1945634‑M1/100‑1 (MQ=255)
gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAG < 2:1922328‑M1/100‑1 (MQ=255)
gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAG > 1:1496126‑M1/1‑100 (MQ=255)
gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAG > 2:3637157‑M1/1‑100 (MQ=255)
gCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAc < 1:2874891‑M1/100‑2 (MQ=255)
cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgt < 1:703062‑M1/100‑13 (MQ=255)
tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgtt > 2:3184019‑M1/1‑87 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgtt > 1:2787051‑M1/1‑87 (MQ=255)
aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttc > 1:2604649‑M1/1‑86 (MQ=255)
aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttc < 2:2787034‑M1/100‑15 (MQ=255)
aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttct < 1:3483814‑M1/100‑16 (MQ=255)
gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctga < 1:3718273‑M1/100‑18 (MQ=255)
gAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctga < 1:2583609‑M1/100‑18 (MQ=255)
aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctga < 1:3733472‑M1/100‑18 (MQ=255)
aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgat < 2:3609277‑M1/100‑19 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgat < 2:774936‑M1/100‑19 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgat < 1:3464813‑M1/100‑19 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTGTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgat < 1:2736571‑M1/100‑19 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGTT‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgat < 2:2764023‑M1/100‑19 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:568618‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:1962096‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:711567‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:1986979‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:3047966‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:3295208‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:322734‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATAAAATCAGAccgcttctgcgttctgatt < 2:1823511‑M1/100‑20 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:2536083‑M1/100‑20 (MQ=255)
aCCGAGAGCCTTAACCGTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGCTTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctga < 2:1945543‑M1/98‑18 (MQ=255)
ccGTGAGTCTTAACCTTACAACGCCTAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:1348272‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCTAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:3496351‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:2604632‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:2536937‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 2:3531475‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:2537540‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGTGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatt < 1:313367‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGACTAAATCAGAccgcttctgcgttctgatt < 2:3318596‑M1/100‑20 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:1036832‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:65588‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:2305577‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:3254676‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:3322905‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:2326573‑M1/100‑21 (MQ=255)
ccGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:369369‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTTATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:3933264‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:197403‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:3062365‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:380644‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:3034382‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:503548‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:2085443‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:876550‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 1:408824‑M1/100‑21 (MQ=255)
cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgattt < 2:619512‑M1/99‑21 (MQ=255)
gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGTGG‑A‑TGAGGGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaa > 2:1313704‑M1/1‑78 (MQ=255)
gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaa < 2:3878473‑M1/100‑23 (MQ=255)
gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaa < 1:2998316‑M1/100‑23 (MQ=255)
gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGAATAATACAGATTAAATCAGAccgcttctgcgttctgatttaa < 2:283804‑M1/100‑23 (MQ=255)
gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 1:3191567‑M1/100‑25 (MQ=255)
gAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 1:1969659‑M1/100‑25 (MQ=255)
agtcttaACCTTACAACGCCGAAGCTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 2:2723294‑M1/97‑25 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 2:910492‑M1/100‑25 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 1:1325308‑M1/100‑25 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatc < 2:553020‑M1/100‑25 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatct < 2:3786500‑M1/100‑26 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatct < 1:391258‑M1/100‑26 (MQ=255)
aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatct < 1:1481101‑M1/100‑26 (MQ=255)
ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatctg < 1:2210014‑M1/100‑27 (MQ=255)
gCTTAACCTTACAACGCCGAAGGTGGTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatctg < 2:1938441‑M1/100‑27 (MQ=255)
gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatctg < 2:315343‑M1/100‑27 (MQ=255)
ttACAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatctgtatcaggc < 1:2842541‑M1/100‑35 (MQ=255)
aCAACGCCGAAGGTGTTTTGGCGG‑ATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAccgcttctgcgttctgatttaatctgtatcaggctg < 1:527868‑M1/100‑37 (MQ=255)
cGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa > 2:2949471/1‑100 (MQ=11)
cGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGAGGTCTGATAAAACAGAATTTGCCTGGCGGCa > 1:2224438/1‑100 (MQ=11)
gCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg < 1:820501/100‑1 (MQ=31)
gCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg > 1:2649922/1‑100 (MQ=31)
cGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGCTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTa > 2:1086027/1‑100 (MQ=17)
cGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGCCTGATAAAACAGAATTTGCCTGGCGGAAGTa > 2:583324/1‑100 (MQ=9)
aGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTTATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcg < 2:1656504/100‑1 (MQ=17)
gCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc < 1:3675267/100‑1 (MQ=33)
gCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCATGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc < 2:1310924/100‑1 (MQ=18)
|
CGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGG‑A‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC > NC_000913/4171503‑4171655
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
