Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F78 I0 R1 34 149.3 7471746 92.4% 6903893 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,966,598 G→A 100% G61E (GGA→GAA)  rho → transcription termination factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,966,5980GA97.3% 412.8 / 0.1 128G61E (GGA→GAA) rhotranscription termination factor
Reads supporting (aligned to +/- strand):  ref base G (2/2);  new base A (53/71);  total (55/73)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 133 total aligned reads displayed.

TGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCAC  >  NC_000913/3966502‑3966694
                                                                                                |                                                                                                
tGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAAtt                                                                                               >  2:66661/1‑100 (MQ=255)
  cGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTg                                                                                             >  1:608727/1‑100 (MQ=255)
   gTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTgg                                                                                            <  2:693595/100‑1 (MQ=255)
   gTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTgg                                                                                            >  2:2539772/1‑100 (MQ=255)
     aaGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGtt                                                                                          >  1:3449414/1‑100 (MQ=255)
     aaGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGtt                                                                                          >  1:3216393/1‑100 (MQ=255)
      aGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGttt                                                                                         >  1:1993014/1‑100 (MQ=255)
       gCAGGACATTATTTTTTTTTTTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGTCGTACTGGAGATATTAAAGGACGAATTTGGttt                                                                                         >  1:135811/1‑99 (MQ=255)
        cAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcc                                                                                       >  2:1983400/1‑100 (MQ=255)
        cAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcc                                                                                       <  2:2987247/100‑1 (MQ=255)
         aGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcct                                                                                      <  1:2721908/100‑1 (MQ=255)
          ggACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcctc                                                                                     <  1:1373472/100‑1 (MQ=255)
          ggACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcctc                                                                                     <  2:3449438/100‑1 (MQ=255)
           gACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcctcc                                                                                    <  2:3149597/100‑1 (MQ=255)
            aCATTATTTTTGCCATTCTGAAGCAGCATGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGCACTGGAGATATTGCAGGATGAATTTGGTTgcc                                                                                       <  1:2165601/96‑1 (MQ=255)
            aCATTATTTTTGCCATCCTGAATGAGCACGCAAAGAGTGGCGAAGAGATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTtcctc                                                                                     <  1:2537465/98‑1 (MQ=255)
             cATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGTCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGt                                                                                  <  2:3162816/100‑1 (MQ=255)
             cATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGt                                                                                  <  2:3601800/100‑1 (MQ=255)
             cATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGGGGCGAAGATATCTTTGTTGATGGCGTACTGGAGATATTGCAGGATGAATTTGATTTCCTCCGt                                                                                  >  1:426528/1‑100 (MQ=255)
              attattTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGTAGAGATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGTTTtcctcc                                                                                    <  1:1791810/97‑1 (MQ=255)
                 attTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCg                                                                              <  2:2695623/100‑1 (MQ=255)
                    tttGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCa                                                                            >  1:349865/1‑99 (MQ=255)
                    tttGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAg                                                                           <  2:702583/100‑1 (MQ=255)
                     ttGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGa                                                                          <  2:590264/100‑1 (MQ=255)
                      tGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGAc                                                                         <  2:1626831/100‑1 (MQ=255)
                        ccATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAg                                                                       >  1:2676083/1‑100 (MQ=255)
                        ccATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAg                                                                       <  2:3023532/100‑1 (MQ=255)
                         cATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGc                                                                      <  2:1165119/100‑1 (MQ=255)
                          aTCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATCAATTTGATTTACTCCGTTCCGCAGACAGc                                                                      >  1:1462523/1‑99 (MQ=255)
                           tCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTc                                                                    >  2:138536/1‑100 (MQ=255)
                            ccTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTcc                                                                   <  1:2014473/100‑1 (MQ=255)
                            ccTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTcc                                                                   >  1:2730165/1‑100 (MQ=255)
                            ccTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTcc                                                                   <  2:156998/100‑1 (MQ=255)
                             cTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCt                                                                  >  2:1106913/1‑100 (MQ=255)
                              tGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTa                                                                 >  1:2353029/1‑100 (MQ=255)
                                aaGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTAcc                                                               <  1:2151394/100‑1 (MQ=255)
                                  gcagcaCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTAcc                                                               >  1:829824/1‑98 (MQ=255)
                                   cagcaCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCg                                                            <  2:882739/100‑1 (MQ=255)
                                     gcaCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGcc                                                          <  1:377131/100‑1 (MQ=255)
                                     gcaCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGcc                                                          <  1:2137413/100‑1 (MQ=255)
                                      caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGCGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCg                                                         >  2:1980295/1‑100 (MQ=255)
                                       aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCgg                                                        <  2:745871/100‑1 (MQ=255)
                                       aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCgg                                                        <  2:1584814/100‑1 (MQ=255)
                                       aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCgg                                                        <  2:1537332/100‑1 (MQ=255)
                                       aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCgg                                                        <  1:1505454/100‑1 (MQ=255)
                                        cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGt                                                       >  2:1071904/1‑100 (MQ=255)
                                          cAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTcc                                                     <  2:2667789/100‑1 (MQ=255)
                                           aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCt                                                    >  2:3302699/1‑100 (MQ=255)
                                            aaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtg                                                   <  1:936725/100‑1 (MQ=255)
                                               agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTTGCCGGTCCtgatg                                                <  2:2512702/100‑1 (MQ=255)
                                               agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatg                                                <  2:2412807/100‑1 (MQ=255)
                                               agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatg                                                <  2:405532/100‑1 (MQ=255)
                                               agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatg                                                <  1:2007507/100‑1 (MQ=255)
                                                gTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatga                                               >  2:2935664/1‑100 (MQ=255)
                                                gTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCtgatg                                                <  2:1618901/99‑1 (MQ=255)
                                                 tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGAc                                              <  2:3015344/100‑1 (MQ=255)
                                                  ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACa                                             <  2:212367/100‑1 (MQ=255)
                                                  ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACa                                             <  1:1106907/100‑1 (MQ=255)
                                                    cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATc                                           <  2:1896352/100‑1 (MQ=255)
                                                     gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCt                                          >  1:2863427/1‑100 (MQ=255)
                                                        gATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACg                                       <  2:2769447/100‑1 (MQ=255)
                                                             cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcc                                  >  2:3383676/1‑100 (MQ=255)
                                                             cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcc                                  >  2:3658460/1‑100 (MQ=255)
                                                             cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcc                                  <  1:803114/100‑1 (MQ=255)
                                                             cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcc                                  >  1:3409394/1‑100 (MQ=255)
                                                             cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTcc                                  >  2:2878827/1‑100 (MQ=255)
                                                              tttGGTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTccc                                 <  2:2661912/100‑1 (MQ=255)
                                                              tttGGTGATGGCGTACTGAAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACTTCTACGTTTcc                                  >  1:3236062/1‑99 (MQ=255)
                                                                  gTGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGGCGGTCCTGATGACATCTACGTTTCCCCTAg                             >  1:461994/1‑100 (MQ=255)
                                                                   tGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGc                            >  2:2966194/1‑100 (MQ=255)
                                                                   tGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGc                            >  1:1375427/1‑100 (MQ=255)
                                                                   tGATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGc                            <  2:608729/100‑1 (MQ=255)
                                                                    gATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc                           <  1:2953298/100‑1 (MQ=255)
                                                                    gATGGCGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc                           <  2:2579634/100‑1 (MQ=255)
                                                                         cGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATc                      <  1:3501530/100‑1 (MQ=255)
                                                                         cGTACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATc                      >  2:1805789/1‑100 (MQ=255)
                                                                           tACTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccg                    >  1:2321277/1‑100 (MQ=255)
                                                                            aCTTGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgc                   <  1:1856149/100‑1 (MQ=255)
                                                                            aCTGGAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgc                   <  1:2954671/100‑1 (MQ=255)
                                                                               ggAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgccg                 >  1:1536052/1‑99 (MQ=255)
                                                                               ggAGATATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGt                >  2:62379/1‑100 (MQ=255)
                                                                                gcgaTATAGCAGGATGAATTTGGTCTCCTCACTTCCGCAGACAGATCCTTCCTCGCCGGTCCTGATAACATCTACGTTTCCCCTAGCCAGAACCGCCGtt               <  1:3490793/98‑1 (MQ=255)
                                                                                gagaTATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGtt               >  1:1764757/1‑100 (MQ=255)
                                                                                 agaTATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGttt              <  1:413901/100‑1 (MQ=255)
                                                                                 agaTATTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGttt              >  2:242627/1‑100 (MQ=255)
                                                                                    tatTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa           <  2:3216415/100‑1 (MQ=255)
                                                                                     atTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAc          <  2:1124844/100‑1 (MQ=255)
                                                                                     atTGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAc          >  1:34392/1‑100 (MQ=255)
                                                                                      ttGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAcc         <  1:1154525/100‑1 (MQ=255)
                                                                                      ttGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAcc         <  1:1596149/100‑1 (MQ=255)
                                                                                       tGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt        >  2:2752363/1‑100 (MQ=255)
                                                                                       tGCAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt        >  1:115004/1‑100 (MQ=255)
                                                                                        gCAGGATGAATTTGGTTTCATCCGTTCCGCATACAGCTCCTACCTCGCCGGCCCTACTGACATCTACTTTTCCCCTAGCCAAATCCGCCGTTTAAAACt        >  1:338913/1‑99 (MQ=255)
                                                                                         cAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCTTTTCAACCTcc      <  2:1226731/100‑1 (MQ=255)
                                                                                         cAGGATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTcc      <  2:759254/100‑1 (MQ=255)
                                                                                           ggatgaatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGc    >  2:299769/1‑100 (MQ=255)
                                                                                           ggatgaatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGc    >  1:10815/1‑100 (MQ=255)
                                                                                            gatgaatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCa   >  1:1604322/1‑100 (MQ=255)
                                                                                            gatgaatTTGGTTTCCTCCGTTCCGCAGACAGCTCATACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCa   >  1:1492453/1‑100 (MQ=255)
                                                                                             atgaatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCAc  >  1:580151/1‑100 (MQ=255)
                                                                                                |                                                                                                
TGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCAC  >  NC_000913/3966502‑3966694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A