Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F125 I0 R1 327 181.4 8809959 94.1% 8290171 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 710,170 C→T 24.8% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913710,1700CT24.8% 331.3 / 109.4 190intergenic (+54/+30)chiQ/furchitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
Reads supporting (aligned to +/- strand):  ref base C (77/65);  new base T (23/24);  total (100/90)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.62e-01

Only 100 of 199 total aligned reads displayed.

CGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATAGAGA  >  NC_000913/710071‑710269
                                                                                                   |                                                                                                   
cGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAccc                                                                                                     <  1:3050524/100‑1 (MQ=255)
     gtgATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAgg                                                                                                >  2:4206827/1‑100 (MQ=255)
      tgATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGt                                                                                               >  2:1363185/1‑100 (MQ=255)
          aaaGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGc                                                                                           <  1:2791808/100‑1 (MQ=255)
           aaGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCt                                                                                          <  1:2380657/100‑1 (MQ=255)
            aGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCtt                                                                                         <  1:952576/100‑1 (MQ=255)
            aGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCCGTAACTCTCGCTTCTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCt                                                                                          >  1:881659/1‑99 (MQ=255)
             gTCTGGCAGGATATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCGGCGGGTTGGCttt                                                                                        <  1:2662513/100‑1 (MQ=255)
             gTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttt                                                                                        <  1:3202032/100‑1 (MQ=255)
             gTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCttt                                                                                        <  2:2195772/100‑1 (MQ=255)
             gTCTGCCAGCAAATACGCAGTCCTGCCAACTAACAGAGAACTGTACCTCTCGTTTTTCTTATTTCCCTTGCATAAAAAAGCCAATCTGCTGGTTGTCttt                                                                                        <  1:3035889/100‑1 (MQ=255)
              tCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCtttt                                                                                       <  1:3555101/100‑1 (MQ=255)
               ctcgCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttt                                                                                        <  1:2730028/95‑1 (MQ=255)
               cTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttttt                                                                                      <  1:2983410/100‑2 (MQ=255)
               cTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttttt                                                                                      <  2:3034299/100‑2 (MQ=255)
               cTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtc                                                                                      <  2:1117029/100‑1 (MQ=255)
               cTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtc                                                                                      <  2:2020740/100‑1 (MQ=255)
                tgccAGTAAATACGCAGTAATAACAAATAAGTGAGATCTGTAACTCTCGCTTTTCTTATTTCCCTTGAATAAAAAAGCCAACCTGCGGGTTGGCttt                                                                                        <  1:955547/94‑1 (MQ=38)
                tGGCAGGAAATACGCAGTAATAACTAATAAGTGAGAGCTGTAACTCTCGCTTGTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttt                                                                                        <  1:350799/97‑1 (MQ=39)
                tGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCtttttt                                                                                     <  2:1674506/100‑3 (MQ=255)
                tGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtct                                                                                     >  2:2881766/1‑100 (MQ=255)
                tGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtct                                                                                     >  1:3281567/1‑100 (MQ=255)
                tGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtct                                                                                     <  2:2599401/100‑1 (MQ=255)
                 ggtaGGAAATACGCAATAATACCAAATAAGTGAGAGCTGAAACTCTCGCTTTTCTTATATCCCTTGCATAAAAAATCCAACCTGCGGGTTGGCttt                                                                                        <  1:736115/93‑1 (MQ=255)
                 ggCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCtttttta                                                                                    <  1:1717960/100‑4 (MQ=39)
                 ggCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCtttttta                                                                                    <  2:3215513/100‑4 (MQ=39)
                 ggCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCtagatcg                                                                                    >  2:954357/1‑94 (MQ=255)
                 ggCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtctc                                                                                    >  2:3931810/1‑100 (MQ=255)
                  gCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCg                                                                                   >  2:4273320/1‑100 (MQ=255)
                  gCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCACTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCg                                                                                   >  1:3873250/1‑100 (MQ=255)
                   cAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGt                                                                                  >  1:2315225/1‑100 (MQ=255)
                   cAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCATTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtctc                                                                                    >  1:2545300/1‑98 (MQ=255)
                   cAGGAAATACGCAGTAAGAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCTGCGGGTTGGCttttttat                                                                                   <  2:2435503/99‑5 (MQ=38)
                    aGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGtt                                                                                 >  2:2341672/1‑100 (MQ=255)
                     ggAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTc                                                                                >  1:2957688/1‑100 (MQ=255)
                        aaTACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAgg                                                                             >  2:3001228/1‑100 (MQ=255)
                         aTACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAggc                                                                            <  2:86107/100‑1 (MQ=255)
                           aCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAggctg                                                                          <  2:748989/100‑1 (MQ=255)
                            cGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAggctgg                                                                         >  1:2906453/1‑100 (MQ=255)
                            cGCAGTAATAACAAATAAGTGAGAGCGGTAACTCTCGCTTTTCGTACTTCCCTTGCATAAAAAAGCCAACCCGCAGGGTGGCTTTTCTCGTTCAgg                                                                             <  1:4185537/96‑1 (MQ=255)
                                   ataaCAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTAttt                                                                  >  2:2909176/1‑100 (MQ=255)
                                    taaCAAATAAGTGAGAGCTGTAAATCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAACCGCAGGTTGGCTTTTCTCGTTAAGGCTGGCTTAttt                                                                  >  1:2443780/1‑99 (MQ=255)
                                     aaCAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGc                                                                >  2:691976/1‑100 (MQ=255)
                                      cttccgatctGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGcc                                                               <  2:3341592/91‑1 (MQ=255)
                                       cAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCt                                                              >  1:3597913/1‑100 (MQ=255)
                                              gTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTgcg                                                       <  1:1012874/100‑1 (MQ=255)
                                              gTGAGAGCTCTAACTCTCTCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGCCTTATTTGCCTTCGTgcg                                                       <  1:1939793/100‑1 (MQ=255)
                                                gagaTCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCa                                                     <  1:2404425/100‑1 (MQ=255)
                                                gagaGCGGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCa                                                     <  1:3893569/100‑1 (MQ=255)
                                                   agCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTACTTGCCTTCGTGCGCATGt                                                  >  1:1784285/1‑100 (MQ=255)
                                                     cTGTATCTCTCGCTTTGCTTATTTCCCTTGCATAAAAAATCCAGCCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGATTATTTGCCTTCGTGCGCa                                                     <  2:2563740/95‑1 (MQ=255)
                                                     cTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTc                                                <  2:2778545/100‑1 (MQ=255)
                                                      tGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCa                                               <  1:2667322/100‑1 (MQ=255)
                                                             ctcGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTcgc                                        >  2:2267525/1‑100 (MQ=255)
                                                               cGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCgg                                      <  1:103811/100‑1 (MQ=255)
                                                               cGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCgg                                      >  2:3750353/1‑100 (MQ=255)
                                                                gCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGc                                     >  2:1498036/1‑100 (MQ=255)
                                                                gCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGc                                     <  2:3592303/100‑1 (MQ=255)
                                                                gCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGc                                     <  2:1195876/100‑1 (MQ=255)
                                                                    ttCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATc                                 <  1:817701/100‑1 (MQ=255)
                                                                     tCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCg                                >  1:587479/1‑100 (MQ=255)
                                                                      cTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCagatcg                               >  2:1263878/1‑95 (MQ=255)
                                                                       ttATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGcc                              <  2:4162213/100‑1 (MQ=255)
                                                                        tATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCt                             >  1:4222052/1‑100 (MQ=255)
                                                                         aTTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCtt                            >  2:3820693/1‑100 (MQ=255)
                                                                            tCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCgg                         >  2:1988539/1‑100 (MQ=255)
                                                                               cTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGcac                      >  2:3278594/1‑100 (MQ=255)
                                                                                 tGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAg                    >  2:1926952/1‑100 (MQ=255)
                                                                                 tGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAg                    >  1:1364141/1‑100 (MQ=255)
                                                                                 tGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTAATCTTCGCGGCAATCGCCTTCGGCACAg                    <  1:2438304/100‑1 (MQ=255)
                                                                                   cATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTg                  <  1:1740363/100‑1 (MQ=255)
                                                                                    cgagaaaaGCCAACCTGCGAGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGa                 >  1:3154610/5‑100 (MQ=38)
                                                                                     tAAAAAGGCCAACGCGCTGGTTGGCGTTTCTGCTTTATGCTGGCTTATTTGCCTGCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAc                <  1:3686901/100‑1 (MQ=255)
                                                                                     tAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAc                >  2:1777553/1‑100 (MQ=255)
                                                                                     tAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAc                <  2:2083598/100‑1 (MQ=255)
                                                                                     tAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAc                >  2:1573945/1‑100 (MQ=255)
                                                                                     gagaaaaGCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAc                >  2:716079/4‑100 (MQ=39)
                                                                                      agaaaaGCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTCTTTGCCTTCGTGCGCATGCTCCTCTTCGCGGCACTCGCCTTCGGCACAGTGAcc               >  1:1073623/3‑100 (MQ=37)
                                                                                      agaaaaGCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAcc               >  1:2864050/3‑100 (MQ=255)
                                                                                      aaaaaaGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAcc               >  1:61875/1‑100 (MQ=255)
                                                                                      aaaaaaGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGAcc               >  2:1634669/1‑100 (MQ=255)
                                                                                       aaaaaGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCg              >  2:3441258/1‑100 (MQ=255)
                                                                                         aaaGCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTa            >  2:323371/1‑100 (MQ=255)
                                                                                         aaaGCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTa            >  1:3647718/1‑100 (MQ=255)
                                                                                         aaaGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTa            <  1:439777/100‑1 (MQ=255)
                                                                                         aaaGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTa            >  2:478920/1‑100 (MQ=255)
                                                                                          aaGCCACCCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCAGGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTaa           <  1:3987913/100‑1 (MQ=255)
                                                                                          aaGCCAACCTGCGCGTTGACTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTCCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCg              >  1:1164550/1‑97 (MQ=255)
                                                                                            gCCAACCTGCGGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAg         >  2:1865224/1‑100 (MQ=255)
                                                                                            gCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAg         >  2:365666/1‑100 (MQ=255)
                                                                                            gCCAACCCGCAGGTTGGCTTTTCTCGTACAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAg         <  1:1267485/100‑1 (MQ=255)
                                                                                             ccAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGa        >  2:4069023/1‑100 (MQ=255)
                                                                                             ccAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGa        >  1:1309420/1‑100 (MQ=255)
                                                                                               aaCCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATa      <  1:3367674/100‑1 (MQ=255)
                                                                                                aCCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATag     >  2:966062/1‑100 (MQ=255)
                                                                                                 tccGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCAACTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATaga    <  2:51441/99‑1 (MQ=255)
                                                                                                 cccGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATaga    <  1:1992800/100‑1 (MQ=255)
                                                                                                 cccGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATaga    >  1:3320180/1‑100 (MQ=255)
                                                                                                 cccGCAGGTTGGCTTTTCGCGTTCAGGCTGGCTTATTTACCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATaga    >  1:2715498/1‑100 (MQ=255)
                                                                                                   cGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATAgaga  >  1:2125122/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTCAGGCTGGCTTATTTGCCTTCGTGCGCATGTTCATCTTCGCGGCAATCGCCTTCGGCACAGTGACCGTAAAGATAGAGA  >  NC_000913/710071‑710269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A