breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 14,116 A→G 17.9% intergenic (+37/‑52) dnaK → / → dnaJ chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone
RA 14,119 G→A 17.9% intergenic (+40/‑49) dnaK → / → dnaJ chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone
RA 14,124 T→A 17.4% intergenic (+45/‑44) dnaK → / → dnaJ chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone
RA 14,132 C→T 17.4% intergenic (+53/‑36) dnaK → / → dnaJ chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone
RA 53,376 G→A 16.2% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 83,587 A→C 18.5% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 18.3% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 120,154 Δ1 bp 16.9% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 17.3% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 151,519 A→C 17.3% I27M (ATT→ATG)  yadK ← putative fimbrial‑like adhesin protein
RA 151,522 G→T 17.3% A26A (GCC→GCA)  yadK ← putative fimbrial‑like adhesin protein
RA 252,589 G→C 17.3% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 252,594 G→C 16.9% W98C (TGG→TGC)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 292,302 C→G 22.3% intergenic (+71/+20) yagJ → / ← yagK CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
RA 335,166 T→A 17.0% intergenic (‑144/‑114) yahC ← / → yahD putative inner membrane protein/ankyrin repeat protein
RA 371,064 C→G 16.4% A263G (GCC→GGC)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 371,067 T→A 16.1% I264N (ATT→AAT)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 371,070 C→G 16.1% A265G (GCC→GGC)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 383,897 C→T 15.9% M13I (ATG→ATA) ‡ yaiP ← putative family 2 glycosyltransferase
RA 383,898 A→G 15.9% M13T (ATG→ACG) ‡ yaiP ← putative family 2 glycosyltransferase
RA 443,022 G→A 19.0% intergenic (+25/+29) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 443,023 T→C 19.2% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 454,853 T→C 16.2% intergenic (+64/‑280) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 454,856 G→A 16.1% intergenic (+67/‑277) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 475,971 C→G 16.3% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 16.5% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 603,391 C→G 18.9% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 19.0% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 19.0% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 657,531 T→G 20.7% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 21.8% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,535 C→A 21.5% intergenic (+34/+20) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 659,204 C→T 18.0% intergenic (+54/+47) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,205 A→T 17.4% intergenic (+55/+46) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,206 A→T 17.9% intergenic (+56/+45) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,207 A→G 17.9% intergenic (+57/+44) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 665,094 G→C 16.4% P33A (CCT→GCT)  rlpA ← septal ring protein, suppressor of prc, minor lipoprotein
RA 681,694 A→G 15.1% intergenic (+31/+29) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,705 C→T 15.2% intergenic (+42/+18) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 691,390 G→C 15.3% A132G (GCC→GGC)  ybeX ← putative ion transport
RA 710,170 C→T 24.8% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 26.4% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 721,004 T→A 17.5% intergenic (+164/+52) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 721,006 T→A 18.0% intergenic (+166/+50) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 721,009 T→A 18.0% intergenic (+169/+47) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 721,011 T→A 17.7% intergenic (+171/+45) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 756,960 A→G 16.0% T352A (ACC→GCC)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 784,012 T→A 15.2% Q271L (CAG→CTG)  zitB ← zinc efflux system
RA 843,749 C→A 100% D578Y (GAT→TAT)  ybiO ← mechanosensitive channel protein, intermediate conductance
RA 857,578 C→G 15.5% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 15.4% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 860,151 A→G 19.2% intergenic (‑123/+23) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,154 A→T 19.8% intergenic (‑126/+20) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,157 C→T 19.5% intergenic (‑129/+17) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 866,388 A→T 15.8% intergenic (‑24/‑180) moeA ← / → iaaA molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein/Isoaspartyl peptidase
RA 866,393 A→T 16.6% intergenic (‑29/‑175) moeA ← / → iaaA molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein/Isoaspartyl peptidase
RA 887,392 T→A 17.6% intergenic (‑53/‑31) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 887,393 T→A 17.6% intergenic (‑54/‑30) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 922,316:1 +C 18.6% intergenic (+23/+50) macB → / ← cspD macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA 949,741 Δ1 bp 19.3% coding (74/591 nt) ycaK → putative NAD(P)H‑dependent oxidoreductase
RA 949,745:1 +G 18.5% coding (78/591 nt) ycaK → putative NAD(P)H‑dependent oxidoreductase
RA 987,560 G→C 17.4% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 17.8% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,015,912 T→A 15.8% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,036,090 G→A 16.2% A107A (GCG→GCA)  hyaD → hydrogenase 1 maturation protease
RA 1,036,094 A→G 16.8% I109V (ATC→GTC)  hyaD → hydrogenase 1 maturation protease
RA 1,036,103 C→T 15.2% H112Y (CAT→TAT)  hyaD → hydrogenase 1 maturation protease
RA 1,036,107 T→C 15.6% L113P (CTG→CCG)  hyaD → hydrogenase 1 maturation protease
RA 1,174,077 G→A 16.1% intergenic (‑113/+15) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,174,080 T→C 15.8% intergenic (‑116/+12) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,196,408 A→T 17.5% intergenic (+35/+459) icd → / ← ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA 1,196,803 A→C 15.4% intergenic (+430/+64) icd → / ← ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA 1,196,804 G→T 16.0% intergenic (+431/+63) icd → / ← ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA 1,211,610 A→G 18.5% intergenic (+33/+70) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,612 A→T 17.7% intergenic (+35/+68) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,614 C→T 18.3% intergenic (+37/+66) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,226,832 T→G 16.6% F78C (TTT→TGT)  ycgJ → uncharacterized protein
RA 1,233,154 T→A 17.8% intergenic (‑124/+22) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,322,394 C→G 16.9% D185H (GAC→CAC)  trpE ← component I of anthranilate synthase
RA 1,322,396 A→T 16.7% I184N (ATT→AAT)  trpE ← component I of anthranilate synthase
RA 1,322,398 C→G 16.7% V183V (GTG→GTC)  trpE ← component I of anthranilate synthase
RA 1,332,633 G→T 100% R529L (CGC→CTC)  topA → DNA topoisomerase I, omega subunit
RA 1,344,033 A→G 15.8% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 15.6% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 15.2% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,357,224 G→A 15.3% intergenic (‑114/+199) sapA ← / ← ymjA antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA 1,357,227 A→G 15.8% intergenic (‑117/+196) sapA ← / ← ymjA antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA 1,357,230 T→A 15.8% intergenic (‑120/+193) sapA ← / ← ymjA antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA 1,357,233 C→T 15.7% intergenic (‑123/+190) sapA ← / ← ymjA antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA 1,357,236 T→C 15.6% intergenic (‑126/+187) sapA ← / ← ymjA antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA 1,388,283 C→T 17.0% intergenic (+22/+22) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,284 A→T 17.3% intergenic (+23/+21) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,285 A→G 17.7% intergenic (+24/+20) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,413,966 T→A 15.3% intergenic (‑39/+18) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,413,968 A→G 15.1% intergenic (‑41/+16) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,426,178 A→T 15.3% intergenic (+96/‑276) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,441,833 G→C 17.3% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,835 A→T 17.2% intergenic (‑92/+19) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,837 G→C 16.6% intergenic (‑94/+17) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,446,357:1 +T 17.8% intergenic (+151/+21) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,446,362 Δ1 bp 17.7% intergenic (+156/+16) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,499,361 A→G 17.1% N142D (AAC→GAC)  rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,499,365 A→T 16.9% Q143L (CAG→CTG)  rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,499,369 C→T 17.7% V144V (GTC→GTT)  rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,533,713 A→C 15.1% F47V (TTT→GTT)  yddH ← flavin reductase like‑protein
RA 1,579,563 G→T 16.0% intergenic (‑221/+70) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,564 G→A 16.9% intergenic (‑222/+69) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,569 T→C 16.1% intergenic (‑227/+64) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,570 A→C 16.6% intergenic (‑228/+63) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,597,272 T→A 15.8% pseudogene (716/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,602,236 A→T 17.2% Q249H (CAA→CAT)  lsrA → autoinducer 2 import ATP‑binding protein
RA 1,602,239 A→T 17.3% K250N (AAA→AAT)  lsrA → autoinducer 2 import ATP‑binding protein
RA 1,620,224 C→G 15.5% intergenic (+17/+14) marB → / ← eamA periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA 1,620,227 C→G 15.8% intergenic (+20/+11) marB → / ← eamA periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA 1,642,370 C→G 17.9% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 17.8% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,650,147 G→A 16.9% pseudogene (70/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,650,148 T→C 16.8% pseudogene (71/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,666,466 T→G 17.9% Y384* (TAT→TAG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,468 A→T 18.7% Q385L (CAG→CTG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,470 C→A 18.9% L386I (CTA→ATA)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,674,955 A→T 17.2% intergenic (+8/+17) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA 1,674,958 A→T 17.3% intergenic (+11/+14) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
MC JC 1,680,573 Δ814 bp 100% [ydgI]–[folM] [ydgI], [folM]
RA 1,689,817 C→A 15.8% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,736,097 T→A 17.9% intergenic (+138/+24) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,736,100 T→A 17.6% intergenic (+141/+21) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,756,529 A→T 100% T278S (ACC→TCC)  pykF → pyruvate kinase I
RA 1,770,203 T→A 18.9% intergenic (+17/‑412) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,204 C→G 19.0% intergenic (+18/‑411) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,205 T→A 18.8% intergenic (+19/‑410) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,778,364 C→T 18.6% intergenic (+17/+26) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,367 C→G 18.5% intergenic (+20/+23) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,372 C→G 18.0% intergenic (+25/+18) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,375 A→G 19.0% intergenic (+28/+15) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,795,229 A→T 15.5% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,827,811 T→G 18.0% K150T (AAA→ACA)  astB ← succinylarginine dihydrolase
RA 1,856,333 T→G 19.3% E199A (GAG→GCG) ‡ ydjH ← putative kinase
RA 1,856,334 C→A 18.7% E199* (GAG→TAG) ‡ ydjH ← putative kinase
RA 1,861,419 A→G 15.1% intergenic (‑87/+283) ydjL ← / ← yeaC putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein
RA 1,861,434 C→T 15.4% intergenic (‑102/+268) ydjL ← / ← yeaC putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein
RA 1,864,758 G→A 17.6% intergenic (+24/+24) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,763 A→T 18.2% intergenic (+29/+19) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,768 T→C 17.2% intergenic (+34/+14) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,865,682 G→C 18.3% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,950,302 Δ1 bp 15.7% coding (221/1773 nt) aspS ← aspartyl‑tRNA synthetase
RA 1,950,306 C→G 15.4% G73R (GGC→CGC)  aspS ← aspartyl‑tRNA synthetase
RA 1,965,904 A→G 15.3% I96I (ATT→ATC)  flhB ← flagellin export apparatus, substrate specificity protein
RA 1,965,907 C→T 15.2% L95L (CTG→CTA)  flhB ← flagellin export apparatus, substrate specificity protein
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein
RA 1,985,112 C→G 17.0% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 2,028,158 G→C 17.8% intergenic (‑141/+30) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,159 T→A 17.8% intergenic (‑142/+29) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,160 G→C 17.9% intergenic (‑143/+28) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,032,336 G→C 20.0% intergenic (‑19/+48) dcm ← / ← yedJ DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase
RA 2,081,688 A→T 17.0% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,089,854 A→T 17.2% intergenic (‑141/‑142) yefM ← / → hisL antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,345 A→G 15.0% intergenic (‑141/+167) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,314,800 A→C 17.0% Q438P (CAG→CCG) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,314,801 G→T 17.3% Q438H (CAG→CAT) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,364,995 T→G 16.0% intergenic (+16/+23) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,364,998 C→A 15.2% intergenic (+19/+20) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,375,483 A→T 15.7% L160L (CTT→CTA) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,375,484 A→T 15.7% L160H (CTT→CAT) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,391,414 C→G 15.9% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 15.6% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,407,898 A→C 15.4% Q113P (CAG→CCG)  alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,434,094 G→A 15.4% R216R (CGC→CGT)  dedA ← DedA family inner membrane protein
RA 2,440,865 C→T 15.5% L247L (CTG→CTA) ‡ fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,440,866 A→G 15.3% L247P (CTG→CCG) ‡ fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,483,900 T→A 15.8% V49D (GTC→GAC)  evgA → response regulator in two‑component regulatory system with EvgS
RA 2,483,906 T→A 15.3% I51N (ATT→AAT)  evgA → response regulator in two‑component regulatory system with EvgS
RA 2,483,912 T→A 16.2% V53D (GTC→GAC)  evgA → response regulator in two‑component regulatory system with EvgS
RA 2,519,222 T→G 16.0% intergenic (+17/+35) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,519,225 T→A 15.5% intergenic (+20/+32) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,519,228 C→A 15.0% intergenic (+23/+29) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,560,317 A→C 18.0% N21H (AAT→CAT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,321 C→T 19.0% A22V (GCT→GTT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,326 A→G 18.3% T24A (ACA→GCA)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,330 G→T 19.4% C25F (TGC→TTC)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,579,157 G→T 15.6% R164R (CGG→CGT)  talA → transaldolase A
RA 2,590,767 T→C 16.7% intergenic (+59/+40) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,590,771 C→G 17.2% intergenic (+63/+36) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,590,775 G→A 17.5% intergenic (+67/+32) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,596,874 Δ1 bp 15.1% intergenic (‑137/+31) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,632,584 A→T 15.1% intergenic (‑49/+20) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,632,588 A→T 15.1% intergenic (‑53/+16) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,679,430 Δ1 bp 15.2% intergenic (‑63/+34) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
RA 2,679,434:1 +C 15.3% intergenic (‑67/+30) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
RA 2,707,320 A→T 20.0% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 20.1% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,716,030 T→G 15.6% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 16.1% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,731,073 A→T 15.1% noncoding (85/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,750,720 C→T 100% intergenic (‑12/‑111) grpE ← / → nadK heat shock protein/NAD kinase
RA 2,761,620 T→G 16.7% K641Q (AAG→CAG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,768,614 A→C 15.5% intergenic (+41/‑51) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,615 G→T 15.0% intergenic (+42/‑50) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,620 G→A 16.3% intergenic (+47/‑45) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,810,759 G→A 100% intergenic (+80/‑11) ygaH → / → mprA putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,872 C→T 15.7% H35Y (CAC→TAC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,873 A→G 15.8% H35R (CAC→CGC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,823,838 C→A 15.5% intergenic (‑69/+11) recA ← / ← pncC DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase
RA 2,823,839 T→G 16.1% intergenic (‑70/+10) recA ← / ← pncC DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase
RA 2,902,494 G→T 17.2% G200V (GGA→GTA) ‡ ygcE → putative kinase
RA 2,902,495 A→C 17.1% G200G (GGA→GGC) ‡ ygcE → putative kinase
RA 2,971,159 G→A 16.0% intergenic (+26/‑112) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,976,320 T→G 16.5% intergenic (‑306/‑279) aas ← / → galR fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase/galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 2,976,321 C→A 16.6% intergenic (‑307/‑278) aas ← / → galR fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase/galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 2,993,889 T→A 16.8% intergenic (+33/‑50) ygeI → / → pbl uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family
RA 3,007,466 T→C 16.6% intergenic (+14/‑44) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,007,473 G→A 16.6% intergenic (+21/‑37) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,052,893 G→T 15.7% P209Q (CCG→CAG)  ubiH ← 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding
RA 3,057,140 A→G 20.5% intergenic (‑191/+38) ibsC ← / ← serA toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,057,145 G→C 21.0% intergenic (‑196/+33) ibsC ← / ← serA toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,057,150 C→T 21.6% intergenic (‑201/+28) ibsC ← / ← serA toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,059,703 A→T 15.0% intergenic (‑2/‑50) yqfE ← / → argP pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA 3,066,319 Δ1 bp 15.7% coding (855/897 nt) ygfI ← putative DNA‑binding transcriptional regulator
RA 3,067,320 A→T 16.8% intergenic (‑147/+20) ygfI ← / ← yggE putative DNA‑binding transcriptional regulator/oxidative stress defense protein
RA 3,067,323 A→T 16.2% intergenic (‑150/+17) ygfI ← / ← yggE putative DNA‑binding transcriptional regulator/oxidative stress defense protein
RA 3,131,524 A→G 15.7% S295S (AGT→AGC)  yghQ ← putative inner membrane polysaccharide flippase
RA 3,135,356 T→C 17.4% Q339R (CAG→CGG) ‡ pitB ← phosphate transporter
RA 3,135,357 G→A 17.3% Q339* (CAG→TAG) ‡ pitB ← phosphate transporter
RA 3,171,852 C→T 16.0% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 15.9% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 15.4% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 15.4% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,181,290 A→T 16.5% E290D (GAA→GAT)  ygiC → ATP‑Grasp family ATPase
RA 3,181,294 G→C 17.8% D292H (GAT→CAT)  ygiC → ATP‑Grasp family ATPase
RA 3,181,298 A→T 17.5% H293L (CAT→CTT)  ygiC → ATP‑Grasp family ATPase
RA 3,183,345:1 +T 16.5% intergenic (+22/+468) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,183,350 Δ1 bp 16.0% intergenic (+27/+463) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,423,231 T→A 15.1% intergenic (+37/+192) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,423,244 C→T 15.0% intergenic (+50/+179) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,423,249 G→A 16.8% intergenic (+55/+174) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,471,357 C→T 15.3% intergenic (‑28/+43) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,476,585 G→A 16.6% intergenic (‑145/+22) yheO ← / ← fkpA putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 3,476,586 T→C 15.5% intergenic (‑146/+21) yheO ← / ← fkpA putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 3,486,771 T→C 18.0% intergenic (+19/‑20) crp → / → yhfK cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein
RA 3,486,776 T→A 18.1% intergenic (+24/‑15) crp → / → yhfK cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein
RA 3,486,781 G→A 16.9% intergenic (+29/‑10) crp → / → yhfK cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,601,824 G→C 17.1% P88R (CCC→CGC) ‡ ftsX ← putative ABC transporter permease
RA 3,601,825 G→C 16.5% P88A (CCC→GCC) ‡ ftsX ← putative ABC transporter permease
RA 3,658,002 C→T 20.4% intergenic (+435/‑364) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,658,003 C→G 20.2% intergenic (+436/‑363) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,658,004 A→G 19.4% intergenic (+437/‑362) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,702,835 G→A 15.5% L12L (CTG→TTG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,702,837 G→C 15.9% P11R (CCG→CGG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,702,839 T→C 16.6% Q10Q (CAA→CAG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,705,970 G→A 29.4% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 29.5% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 39.6% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 40.0% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,722,300 G→T 16.2% intergenic (+251/+28) insK → / ← glyS IS150 transposase B/glycine tRNA synthetase, beta subunit
RA 3,722,301 A→C 15.8% intergenic (+252/+27) insK → / ← glyS IS150 transposase B/glycine tRNA synthetase, beta subunit
RA 3,752,107:1 +G 15.4% coding (116/975 nt) yiaU → putative DNA‑binding transcriptional regulator
RA 3,790,300 A→T 18.5% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 18.1% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,794,970 G→C 15.8% M14I (ATG→ATC)  waaF → ADP‑heptose:LPS heptosyltransferase II
RA 3,794,973 G→C 15.8% M15I (ATG→ATC)  waaF → ADP‑heptose:LPS heptosyltransferase II
RA 3,798,234 A→T 19.4% intergenic (+27/+5) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
RA 3,798,235 A→T 19.3% intergenic (+28/+4) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
JC 3,815,859 Δ82 bp 100% [rph]–[rph] [rph], [rph]
RA 3,817,948 G→T 16.4% E63D (GAG→GAT)  dinD → DNA damage‑inducible protein
RA 3,832,188 A→T 16.8% intergenic (+22/+31) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,191 C→G 17.2% intergenic (+25/+28) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,194 A→T 17.6% intergenic (+28/+25) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,797 T→G 16.1% N581H (AAC→CAC)  yicI ← putative alpha‑glucosidase
RA 3,832,800 C→A 15.8% A580S (GCG→TCG)  yicI ← putative alpha‑glucosidase
RA 3,888,213 Δ1 bp 15.8% intergenic (+21/‑222) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,219 T→A 17.5% intergenic (+27/‑216) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,225:1 +A 16.7% intergenic (+33/‑210) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,891,502 C→G 15.6% intergenic (+19/‑113) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,900,410 A→T 15.1% P56P (CCT→CCA)  yieL ← putative xylanase
RA 3,920,796 T→C 15.8% A31A (GCA→GCG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,920,809 G→A 16.9% P27L (CCG→CTG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,980,726 G→A 17.1% intergenic (+30/‑161) wecG → / → yifK UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
RA 3,980,727 T→C 16.7% intergenic (+31/‑160) wecG → / → yifK UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
RA 4,017,217:1 +A 15.6% intergenic (+25/‑116) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,017,223 Δ1 bp 15.2% intergenic (+31/‑110) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,022,007 C→T 18.2% G21G (GGC→GGT)  tatA → TatABCE protein translocation system subunit
RA 4,022,008 A→G 15.7% T22A (ACC→GCC)  tatA → TatABCE protein translocation system subunit
RA 4,051,259 G→T 21.4% intergenic (‑494/‑88) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,051,262 A→C 21.2% intergenic (‑497/‑85) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,062,371 A→T 15.1% N42I (AAT→ATT)  yihN → MFS transporter family protein
RA 4,072,171 C→A 100% V161F (GTC→TTC)  yihT ← 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase
RA 4,078,996 G→T 100% intergenic (+558/‑301) yiiD → / → yiiE GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator
RA 4,113,473 T→C 15.9% L61L (TTG→CTG) ‡ uspD → stress‑induced protein
RA 4,113,474 T→A 16.9% L61* (TTG→TAG) ‡ uspD → stress‑induced protein
RA 4,113,475 G→A 16.2% L61L (TTG→TTA) ‡ uspD → stress‑induced protein
RA 4,148,049 C→G 15.1% G90A (GGC→GCC)  yijO ← AraC family putative transcriptional activator
RA 4,177,171 T→A 18.9% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,177,172 T→A 18.1% intergenic (+44/‑186) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,189,448 C→T 100% Q1367* (CAG→TAG)  rpoC → RNA polymerase, beta prime subunit
JC 4,215,179 Δ4 bp 100% coding (900‑903/930 nt) metA → homoserine O‑transsuccinylase
RA 4,242,546 G→A 18.8% intergenic (‑292/+80) xylE ← / ← malG D‑xylose transporter/maltose transporter subunit
RA 4,242,547 T→C 18.8% intergenic (‑293/+79) xylE ← / ← malG D‑xylose transporter/maltose transporter subunit
RA 4,261,358 T→A 19.2% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 18.7% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,262,250 G→C 17.9% G194G (GGG→GGC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,262,255 G→C 17.7% S196T (AGC→ACC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,291,512 G→A 18.8% M1M (GTG→ATG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,291,513 T→C 18.6% M1A (GTG→GCG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,296,060 C→T 33.4% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,312,080 G→C 15.9% intergenic (‑38/+21) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,083 G→C 15.1% intergenic (‑41/+18) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,332,868 G→T 15.6% R135R (CGC→CGA)  basS ← sensory histidine kinase in two‑component regulatory system with BasR
RA 4,335,654 T→A 16.4% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 16.7% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,356,445 A→T 15.4% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 15.9% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,365,452 G→T 16.5% intergenic (‑96/+20) cutA ← / ← dcuA divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter
RA 4,365,453 A→C 16.3% intergenic (‑97/+19) cutA ← / ← dcuA divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter
RA 4,410,037 T→C 15.4% intergenic (+31/‑96) rlmB → / → yjfI 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA 4,470,951 A→C 15.6% intergenic (‑38/+35) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,952 T→C 16.0% intergenic (‑39/+34) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,957 G→A 16.5% intergenic (‑44/+29) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,958 G→T 16.4% intergenic (‑45/+28) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,520,500 Δ1 bp 16.0% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 16.1% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,532,534 G→C 15.5% A217G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,532,537 G→C 15.5% A216G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,549,932 T→A 16.8% intergenic (+222/+21) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 25710 =NA (NA)12 (0.080) 8/164 NT NA noncoding (1/86 nt) REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 25742 = NA (NA)noncoding (33/86 nt) REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 39200NA (NA)11 (0.080) 7/164 NT NA noncoding (50/82 nt) REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 39232 NA (NA)noncoding (82/82 nt) REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 50326NA (NA)14 (0.100) 9/164 NT NA intergenic (+24/+54) folA/apaH dihydrofolate reductase/diadenosine tetraphosphatase
?NC_000913 = 50359 NA (NA)noncoding (33/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 50327 =NA (NA)12 (0.080) 5/164 NT NA noncoding (1/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 50360 = NA (NA)noncoding (34/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 213636 =NA (NA)6 (0.040) 3/164 NT NA noncoding (5/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 213669 = NA (NA)intergenic (+40/+9) tilS/rof tRNA(Ile)‑lysidine synthetase/modulator of Rho‑dependent transcription termination
* ? NC_000913 = 224027NA (NA)26 (0.180) 9/166 NT NA noncoding (257/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224038 NA (NA)noncoding (268/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 224059 =NA (NA)72 (0.500) 17/164 NT NA noncoding (289/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224082 = NA (NA)noncoding (312/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 224210NA (NA)6 (0.040) 6/172 NT NA noncoding (440/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224263 NA (NA)noncoding (493/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225078 =NA (NA)86 (0.590) 18/164 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225084NA (NA)43 (0.300) 10/164 NT NA noncoding (1314/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 225092 NA (NA)noncoding (1322/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225154 =NA (NA)57 (0.380) 19/168 NT NA noncoding (1384/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225176 = NA (NA)noncoding (1406/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225685185 (1.170)57 (0.390) 22/166 NT 24.8% intergenic (+110/‑74) alaV/rrlH tRNA‑Ala/23S ribosomal RNA of rrnH operon
?NC_000913 = 3943636 NA (NA)intergenic (+126/‑68) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
* ? NC_000913 225889 =NA (NA)45 (0.310) 18/164 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 225895NA (NA)92 (0.630) 13/164 NT NA noncoding (137/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 225899 NA (NA)noncoding (141/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 225998NA (NA)44 (0.290) 19/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226704 =NA (NA)23 (0.150) 13/170 NT NA noncoding (946/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226730 = NA (NA)noncoding (972/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226819 =NA (NA)13 (0.090) 5/168 NT NA noncoding (1061/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226836 = NA (NA)noncoding (1078/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 227034 =NA (NA)71 (0.480) 14/166 NT NA noncoding (1276/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 227053 = NA (NA)noncoding (1295/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 227242 =NA (NA)21 (0.140) 7/166 NT NA noncoding (1484/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 227264 = NA (NA)noncoding (1506/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)44 (0.300) 14/168 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228016 =NA (NA)78 (0.540) 16/164 NT NA noncoding (2258/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228041 = NA (NA)noncoding (2283/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228022NA (NA)30 (0.210) 7/164 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228108NA (NA)62 (0.410) 15/170 NT NA noncoding (2350/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228124 NA (NA)noncoding (2366/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228224NA (NA)22 (0.150) 11/166 NT NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 274347 =NA (NA)31 (0.210) 13/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274384 =NA (NA)29 (0.190) 13/172 NT NA noncoding (766/1195 nt) IS5 repeat region
?NC_000913 274422 = NA (NA)noncoding (728/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)35 (0.250) 11/160 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 274653NA (NA)50 (0.330) 12/170 NT NA noncoding (497/1195 nt) IS5 repeat region
?NC_000913 = 274663 NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 274682 =NA (NA)8 (0.050) 5/172 NT NA noncoding (468/1195 nt) IS5 repeat region
?NC_000913 274704 = NA (NA)noncoding (446/1195 nt) IS5 repeat region
* ? NC_000913 = 274695NA (NA)25 (0.170) 12/170 NT NA noncoding (455/1195 nt) IS5 repeat region
?NC_000913 = 274727 NA (NA)noncoding (423/1195 nt) IS5 repeat region
* ? NC_000913 = 274882NA (NA)19 (0.130) 10/168 NT NA noncoding (268/1195 nt) IS5 repeat region
?NC_000913 = 274899 NA (NA)noncoding (251/1195 nt) IS5 repeat region
* ? NC_000913 274965 =NA (NA)42 (0.280) 15/172 NT NA noncoding (185/1195 nt) IS5 repeat region
?NC_000913 274991 = NA (NA)noncoding (159/1195 nt) IS5 repeat region
* ? NC_000913 = 275007NA (NA)52 (0.340) 15/172 NT NA noncoding (143/1195 nt) IS5 repeat region
?NC_000913 = 275025 NA (NA)noncoding (125/1195 nt) IS5 repeat region
* ? NC_000913 = 277706NA (NA)21 (0.140) 10/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 279841NA (NA)27 (0.180) 10/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region
* ? NC_000913 315563 =NA (NA)13 (0.090) 8/158 NT NA noncoding (335/1255 nt) IS3 repeat region
?NC_000913 315599 = NA (NA)noncoding (371/1255 nt) IS3 repeat region
* ? NC_000913 = 315572NA (NA)16 (0.110) 8/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 = 315646NA (NA)39 (0.260) 14/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region
* ? NC_000913 = 315852NA (NA)52 (0.340) 15/170 NT NA noncoding (624/1255 nt) IS3 repeat region
?NC_000913 = 315875 NA (NA)noncoding (647/1255 nt) IS3 repeat region
* ? NC_000913 = 316201NA (NA)32 (0.230) 10/160 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 349605 =NA (NA)19 (0.130) 8/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 349783135 (0.850)30 (0.210) 7/164 NT 18.7% noncoding (179/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349845 137 (0.940)noncoding (241/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 358762 =131 (0.830)23 (0.150) 11/168 NT 15.1% intergenic (‑72/‑37) cynR/cynT transcriptional activator of cyn operon; autorepressor/carbonic anhydrase
?NC_000913 358788 = 135 (0.910)intergenic (‑98/‑11) cynR/cynT transcriptional activator of cyn operon; autorepressor/carbonic anhydrase
* ? NC_000913 374930 =NA (NA)16 (0.110) 8/164 NT NA noncoding (1/436 nt) REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 2842453 = NA (NA)noncoding (31/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 377335 =NA (NA)25 (0.170) 10/164 NT NA noncoding (1/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 377368 = NA (NA)noncoding (34/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 381663 =NA (NA)32 (0.220) 9/164 NT NA noncoding (404/1331 nt) IS2 repeat region
?NC_000913 381703 = NA (NA)noncoding (444/1331 nt) IS2 repeat region
* ? NC_000913 = 381669NA (NA)51 (0.350) 20/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)80 (0.540) 17/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 382110 =NA (NA)10 (0.070) 6/168 NT NA noncoding (851/1331 nt) IS2 repeat region
?NC_000913 382141 = NA (NA)noncoding (882/1331 nt) IS2 repeat region
* ? NC_000913 382282 =NA (NA)24 (0.160) 11/166 NT NA noncoding (1023/1331 nt) IS2 repeat region
?NC_000913 382313 = NA (NA)noncoding (1054/1331 nt) IS2 repeat region
* ? NC_000913 409056 =NA (NA)23 (0.160) 9/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
* ? NC_000913 501448 =NA (NA)14 (0.100) 10/164 NT NA noncoding (5/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 501478 = NA (NA)noncoding (35/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 508778 =194 (1.230)27 (0.280)
+34 bp		 9/110 NT 18.5% noncoding (197/236 nt) REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences
?NC_000913 = 4374596 NA (NA)noncoding (99/99 nt) RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 526005NA (NA)16 (0.110) 9/168 NT 100% coding (2745/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 526027 0 (0.000)coding (2767/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 526259 =NA (NA)14 (0.090) 7/168 NT 100% coding (2999/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 526275 = 0 (0.000)coding (3015/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 699505NA (NA)9 (0.060) 5/162 NT NA noncoding (81/98 nt) RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4441401 = NA (NA)noncoding (9/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 729987NA (NA)6 (0.040) 3/168 NT NA coding (405/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730012 NA (NA)coding (430/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 730045NA (NA)22 (0.150) 11/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 730068 =30 (0.190)11 (0.070) 7/168 NT 28.0% coding (486/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619655 = NA (NA)coding (464/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 731011149 (0.940)42 (0.290) 9/166 NT 22.2% coding (1429/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 731020 155 (1.050)coding (1438/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 734728 =NA (NA)37 (0.250) 12/170 NT 35.0% pseudogene (596/1521 nt) rhsO pseudogene, Rhs family
?NC_000913 734759 = 72 (0.460)pseudogene (627/1521 nt) rhsO pseudogene, Rhs family
* ? NC_000913 = 819757NA (NA)10 (0.070) 6/166 NT NA intergenic (+10/‑127) moaE/ybhL molybdopterin synthase, large subunit/putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein
?NC_000913 = 819784 NA (NA)noncoding (27/27 nt) REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 857633 =NA (NA)3 (0.020) 3/162 NT NA noncoding (18/98 nt) RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4441401 = NA (NA)noncoding (9/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 864288 =NA (NA)10 (0.070) 7/158 NT NA coding (647/663 nt) fsaA fructose‑6‑phosphate aldolase 1
?NC_000913 864318 = NA (NA)intergenic (+14/+62) fsaA/moeB fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase
* ? NC_000913 = 872429124 (0.780)21 (0.140) 10/168 NT 15.1% coding (540/912 nt) gsiD glutathione ABC transporter permease
?NC_000913 = 872441 119 (0.800)coding (552/912 nt) gsiD glutathione ABC transporter permease
* ? NC_000913 = 884917126 (0.800)22 (0.160) 9/160 NT 15.9% intergenic (+12/+29) mdfA/ybjH multidrug efflux system protein/uncharacterized protein
?NC_000913 = 884930 119 (0.840)intergenic (+25/+16) mdfA/ybjH multidrug efflux system protein/uncharacterized protein
* ? NC_000913 900753 =NA (NA)7 (0.050) 5/164 NT NA noncoding (5/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 900783 = NA (NA)noncoding (35/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 937227 =NA (NA)14 (0.100) 9/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 937261 = NA (NA)intergenic (+48/‑111) ftsK/lolA DNA translocase at septal ring sorting daughter chromsomes/lipoprotein chaperone
* ? NC_000913 = 1040546NA (NA)14 (0.100) 8/158 NT NA noncoding (4/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1040578 NA (NA)noncoding (36/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1040547 =NA (NA)17 (0.120) 8/158 NT NA noncoding (5/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1040579 = NA (NA)intergenic (+42/‑38) cbdX/appA putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase
* ? NC_000913 = 1044089106 (0.670)19 (0.140) 10/158 NT 15.9% coding (122/2181 nt) etk tyrosine‑protein kinase, role in O‑antigen capsule formation
?NC_000913 = 1044098 107 (0.760)coding (113/2181 nt) etk tyrosine‑protein kinase, role in O‑antigen capsule formation
* ? NC_000913 1069018 =115 (0.730)25 (0.170) 12/164 NT 20.1% coding (822/1329 nt) rutG pyrimidine permease
?NC_000913 1069048 = 93 (0.640)coding (792/1329 nt) rutG pyrimidine permease
* ? NC_000913 = 1107709135 (0.850)25 (0.170) 11/164 NT 16.3% coding (1355/1422 nt) clsC stationary phase cardiolipin synthase 3
?NC_000913 = 1107724 132 (0.910)coding (1370/1422 nt) clsC stationary phase cardiolipin synthase 3
* ? NC_000913 = 1190585NA (NA)5 (0.030) 4/166 NT NA noncoding (6/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1190596 NA (NA)noncoding (17/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1207790 =33 (0.210)91 (0.700) 58/146 NT 80.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 16 (0.120)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780537 (0.230)90 (0.700) 60/146 NT 79.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 16 (0.120)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 1269275NA (NA)26 (0.180) 9/162 NT 15.2% coding (1/108 nt) ldrA toxic polypeptide, small
?NC_000913 = 1269313 159 (1.010)intergenic (‑38/+390) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 = 1269694120 (0.760)17 (0.120) 6/166 NT 17.2% intergenic (‑419/+9) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
?NC_000913 = 1270193 52 (0.350)intergenic (‑383/+45) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 1294420 =NA (NA)8 (0.050) 6/168 NT NA intergenic (+276/+6) tdk/insZ thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog
?NC_000913 1294445 = NA (NA)noncoding (961/980 nt) ISZ repeat region
* ? NC_000913 = 12994980 (0.000)117 (0.780) 76/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1320872124 (0.780)21 (0.150) 6/162 NT 15.6% coding (513/1596 nt) trpD fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase
?NC_000913 = 1320882 114 (0.790)coding (503/1596 nt) trpD fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase
* ? NC_000913 = 1396661NA (NA)15 (0.100) 11/164 NT 31.8% noncoding (618/1195 nt) IS5 repeat region
?NC_000913 1428197 = 35 (0.220)noncoding (598/1196 nt) IS5 repeat region
* ? NC_000913 = 1432761NA (NA)12 (0.080) 7/170 NT NA coding (351/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432785 NA (NA)coding (375/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
* ? NC_000913 = 1468681NA (NA)60 (0.760)
+44 bp		 12/90 NT NA noncoding (560/1331 nt) IS2 repeat region
?NC_000913 1650843 = NA (NA)noncoding (1/706 nt) IS2 repeat region
* ? NC_000913 1665136 =NA (NA)15 (0.110) 7/156 NT NA noncoding (1/31 nt) REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1665167 = NA (NA)intergenic (+47/‑148) dmsD/clcB twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter
* ? NC_000913 1755631 =101 (0.640)16 (0.110) 7/166 NT 15.8% intergenic (‑490/‑67) ydhZ/pykF uncharacterized protein/pyruvate kinase I
?NC_000913 1755657 = 76 (0.520)intergenic (‑516/‑41) ydhZ/pykF uncharacterized protein/pyruvate kinase I
* ? NC_000913 = 1816343NA (NA)14 (0.090) 6/172 NT NA noncoding (159/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 1816373 NA (NA)noncoding (189/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 = 1843797NA (NA)20 (0.140) 11/166 NT NA noncoding (74/93 nt) REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1843810 NA (NA)noncoding (87/93 nt) REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1886815 =102 (0.650)16 (0.120) 10/156 NT 15.2% intergenic (+5/+49) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
?NC_000913 1886858 = 89 (0.640)intergenic (+48/+6) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
* ? NC_000913 1928212 =127 (0.800)20 (0.140) 8/164 NT 15.6% coding (628/2061 nt) ptrB protease II
?NC_000913 1928238 = 100 (0.690)coding (602/2061 nt) ptrB protease II
* ? NC_000913 = 19785020 (0.000)108 (0.750) 72/162 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein
* ? NC_000913 = 20668320 (0.000)24 (0.170) 10/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 = 2118622NA (NA)13 (0.090) 8/168 NT NA noncoding (157/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 2118649 NA (NA)noncoding (184/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 2146653NA (NA)8 (0.060) 6/164 NT NA noncoding (54/84 nt) REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2146683 NA (NA)noncoding (84/84 nt) REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2151673 =NA (NA)12 (0.090) 10/156 NT NA intergenic (+27/+38) yegJ/yegK uncharacterized protein/ser/thr phosphatase‑related protein
?NC_000913 2151703 = NA (NA)intergenic (+57/+8) yegJ/yegK uncharacterized protein/ser/thr phosphatase‑related protein
* ? NC_000913 2154593 =112 (0.710)20 (0.140) 11/162 NT 17.3% coding (578/1248 nt) mdtA multidrug efflux system, subunit A
?NC_000913 2154624 = 89 (0.620)coding (609/1248 nt) mdtA multidrug efflux system, subunit A
* ? NC_000913 2204447 =126 (0.800)22 (0.160) 12/156 NT 18.5% intergenic (+158/‑149) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
?NC_000913 2204492 = 83 (0.600)intergenic (+203/‑104) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
* ? NC_000913 2304496 =127 (0.800)34 (0.230) 12/164 NT 22.5% noncoding (80/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304591 = NA (NA)noncoding (175/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2304654 =NA (NA)17 (0.120) 10/164 NT 100% noncoding (238/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304670 = 0 (0.000)noncoding (254/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2304817 =NA (NA)26 (0.180) 8/164 NT 33.9% noncoding (401/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304948 = 55 (0.350)noncoding (532/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 2305015NA (NA)37 (0.370)
+33 bp		 8/112 NT NA noncoding (599/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305065 NA (NA)noncoding (649/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 2368479112 (0.710)20 (0.140) 7/162 NT 15.3% coding (441/1983 nt) arnA fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase
?NC_000913 = 2368492 120 (0.840)coding (454/1983 nt) arnA fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase
* ? NC_000913 = 2440342NA (NA)13 (0.090) 9/166 NT NA intergenic (‑222/+43) yfcJ/fabB putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
?NC_000913 = 2440374 NA (NA)noncoding (32/36 nt) REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2470054 =168 (1.060)29 (0.200) 13/164 NT 16.0% coding (924/1332 nt) gtrS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
?NC_000913 2470086 = 149 (1.020)coding (956/1332 nt) gtrS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
* ? NC_000913 2511352 =NA (NA)11 (0.080) 6/164 NT NA noncoding (1/88 nt) REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2662541 NA (NA)noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 = 2539674NA (NA)27 (0.190) 15/164 NT NA intergenic (‑91/+43) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
?NC_000913 = 2539688 NA (NA)intergenic (‑105/+29) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
* ? NC_000913 2568139 =NA (NA)8 (0.060) 5/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2568169 = NA (NA)noncoding (31/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 2727847 =NA (NA)18 (0.120) 8/170 NT NA noncoding (1338/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727872 = NA (NA)noncoding (1313/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2727891 =NA (NA)127 (0.860) 20/166 NT NA noncoding (1294/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727910 = NA (NA)noncoding (1275/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)82 (0.540) 17/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2731304 =56 (0.350)52 (0.350) 14/166 NT 49.9% intergenic (‑147/+296) rrsG/clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
?NC_000913 = 4035360 NA (NA)intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
* ? NC_000913 2794028 =NA (NA)15 (0.100) 9/166 NT NA noncoding (1/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 2794059 = NA (NA)noncoding (32/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 = 2798052NA (NA)15 (0.100) 7/166 NT NA intergenic (+8/+39) ygaP/stpA DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
?NC_000913 = 2798082 NA (NA)noncoding (30/30 nt) REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2888333NA (NA)5 (0.030) 4/164 NT NA intergenic (‑21/+54) cysH/cysI phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding
?NC_000913 = 2888366 NA (NA)noncoding (33/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2888334 =NA (NA)17 (0.120) 10/164 NT NA noncoding (1/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2888367 = NA (NA)noncoding (34/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2900520 =138 (0.870)21 (0.150) 11/156 NT 15.1% intergenic (‑247/‑72) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 2900560 = 116 (0.840)intergenic (‑287/‑32) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
* ? NC_000913 = 2900530138 (0.870)23 (0.170) 11/156 NT 16.3% intergenic (‑257/‑62) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 = 2900548 116 (0.840)intergenic (‑275/‑44) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
* ? NC_000913 2950598 =NA (NA)20 (0.140) 7/158 NT NA intergenic (+25/+37) argA/recD amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain
?NC_000913 2950615 = NA (NA)noncoding (3/14 nt) REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 3114511NA (NA)11 (0.080) 6/164 NT NA noncoding (134/168 nt) REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 = 3114541 NA (NA)noncoding (164/168 nt) REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 3277819 =NA (NA)10 (0.070) 5/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 3299608158 (1.000)34 (0.240) 11/158 NT 18.7% coding (308/444 nt) yhbP UPF0306 family protein
?NC_000913 = 3299630 156 (1.110)coding (286/444 nt) yhbP UPF0306 family protein
* ? NC_000913 3336878 =NA (NA)18 (0.120) 8/168 NT NA intergenic (‑75/+85) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
?NC_000913 3336905 = NA (NA)intergenic (‑102/+58) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
* ? NC_000913 = 3392342NA (NA)29 (0.200)
+CTACAAACG		 8/160 NT NA noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?NC_000913 = 3392393 NA (NA)intergenic (‑365/+65) tldD/yhdP putative peptidase/DUF3971‑AsmA2 domains protein
* ? NC_000913 = 34238220 (0.000)73 (0.500) 13/166 NT 100% intergenic (‑35/+58) rrfD/rrlD 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 3470277 =NA (NA)32 (0.220) 11/164 NT NA coding (1053/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470311 = NA (NA)coding (1019/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 = 3546221NA (NA)19 (0.130) 11/166 NT NA intergenic (+22/‑338) nfuA/gntT Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system
?NC_000913 = 3546253 NA (NA)noncoding (32/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3547887 =NA (NA)10 (0.070) 6/164 NT NA noncoding (1/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3547917 = NA (NA)noncoding (31/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3619841 =NA (NA)10 (0.070) 6/166 NT 100% coding (650/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619863 = 0 (0.000)coding (672/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620123 =NA (NA)12 (0.080) 9/166 NT 100% coding (932/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620147 = 0 (0.000)coding (956/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620220NA (NA)26 (0.180) 11/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620569 =NA (NA)49 (0.330) 12/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3621314NA (NA)6 (0.040) 5/168 NT 100% coding (2123/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621344 0 (0.000)coding (2153/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3621988NA (NA)7 (0.050) 4/162 NT NA coding (2797/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3622011 NA (NA)coding (2820/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3622540 =NA (NA)39 (0.260) 8/168 NT 100% coding (3349/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622556 = 0 (0.000)coding (3365/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3624732103 (0.650)19 (0.130) 9/166 NT 18.5% coding (355/1137 nt) yhhI putative transposase
?NC_000913 = 3624757 71 (0.480)coding (380/1137 nt) yhhI putative transposase
* ? NC_000913 3781698 =NA (NA)9 (0.060) 5/164 NT NA noncoding (1/29 nt) REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3781727 = NA (NA)intergenic (+39/+14) trmL/cysE tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent/serine acetyltransferase
* ? NC_000913 = 3819519155 (0.980)27 (0.190) 12/160 NT 15.2% coding (1652/1683 nt) ligB DNA ligase, NAD(+)‑dependent
?NC_000913 = 3819527 163 (1.150)coding (1644/1683 nt) ligB DNA ligase, NAD(+)‑dependent
* ? NC_000913 3898629 =NA (NA)24 (0.170) 12/162 NT NA intergenic (+20/+42) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
?NC_000913 3898659 = NA (NA)intergenic (+50/+12) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
* ? NC_000913 = 3898636NA (NA)35 (0.240) 14/162 NT NA noncoding (6/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3898650 NA (NA)noncoding (20/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3908387 =NA (NA)16 (0.110) 7/164 NT NA noncoding (1/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3908412 = NA (NA)noncoding (26/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 394152130 (0.190)19 (0.130) 7/168 NT 40.2% intergenic (‑194/‑287) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
?NC_000913 = 3941548 NA (NA)intergenic (‑221/‑260) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
* ? NC_000913 = 394347921 (0.130)24 (0.160) 11/166 NT 55.1% noncoding (45/76 nt) gltU tRNA‑Glu
?NC_000913 = 4168397 NA (NA)noncoding (26/76 nt) gltT tRNA‑Glu
* ? NC_000913 4103511 =NA (NA)8 (0.060) 4/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4137869NA (NA)6 (0.040) 4/162 NT NA noncoding (81/98 nt) RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4441401 = NA (NA)noncoding (9/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 417160737 (0.230)134 (0.910) 16/166 NT 79.5% intergenic (+63/‑30) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
?NC_000913 = 4213022 NA (NA)intergenic (+76/‑18) rrlE/rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
* ? NC_000913 = 4219847154 (0.970)34 (0.250) 15/154 NT 19.4% coding (1252/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
?NC_000913 = 4219854 149 (1.090)coding (1259/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
* ? NC_000913 4229380 =NA (NA)20 (0.140) 12/164 NT NA noncoding (5/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4229413 = NA (NA)noncoding (38/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4235376 =NA (NA)10 (0.070) 5/156 NT NA coding (1619/1650 nt) pgi glucosephosphate isomerase
?NC_000913 4235411 = NA (NA)intergenic (+4/‑495) pgi/yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
* ? NC_000913 = 4295947NA (NA)35 (0.240) 9/164 NT 18.9% noncoding (113/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4295980 163 (1.030)noncoding (146/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4314408 =163 (1.030)26 (0.180) 14/160 NT 15.4% coding (695/759 nt) phnP 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
?NC_000913 4314437 = 140 (0.990)coding (666/759 nt) phnP 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
* ? NC_000913 4317917 =NA (NA)19 (0.130) 7/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4386017NA (NA)19 (0.130) 12/164 NT NA coding (314/315 nt) yjeO inner membrane protein
?NC_000913 = 4386039 NA (NA)intergenic (+21/+8) yjeO/mscM inner membrane protein/mechanosensitive channel protein, miniconductance
* ? NC_000913 4415962 =NA (NA)27 (0.180) 14/166 NT NA noncoding (5/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4415992 = NA (NA)intergenic (+92/+25) aidB/yjfN DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein
* ? NC_000913 4441393 =NA (NA)11 (0.080) 6/164 NT NA noncoding (1/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4441418 = NA (NA)noncoding (26/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 4450948 =NA (NA)12 (0.080) 9/164 NT NA noncoding (5/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4450978 = NA (NA)noncoding (35/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4460417 =NA (NA)33 (0.220) 13/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4587878NA (NA)20 (0.140) 12/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences