Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F112 I0 R1
|
51 |
112.5 |
5500062 |
95.1% |
5230558 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
22.9% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 22.9%
| 338.8
/ 87.1
| 166 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (54/65); new base T (34/2); total (99/67) |
| Fisher's exact test for biased strand distribution p-value = 5.29e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-01 |
Only 100 of 169 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 1:354841/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 1:1547195/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:2631388/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 1:1694706/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:1133869/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:768951/100‑1 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAACTTCAATACATTGCAGa‑a > 2:1046636/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑At‑ttt > 2:206616/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑At‑ttt > 2:241697/1‑100 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTc > 1:1065956/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑g < 2:2193861/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑g < 1:666549/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑g < 1:729138/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTa > 2:46913/1‑100 (MQ=255)
gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCGGGCCTCC‑AAAGTCGTGCAAGTTCAATACATTGTAGA‑Ag‑ttt > 2:2412171/7‑94 (MQ=14)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGc < 1:699052/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGcc < 2:2429716/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGcc < 2:710041/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTg < 1:300445/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTg > 1:1220658/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGa > 2:2443537/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGa > 1:407172/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGAt < 1:2648097/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATa < 2:1750035/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGc < 1:8254/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGc < 1:2450090/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg < 1:2591667/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGGATAT‑AAAATCGTTCAGATTCAATACATTGCAGA‑AT‑TTAC‑‑GTAGTCCTGAt < 2:667154/94‑1 (MQ=17)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 2:1711901/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:501753/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg > 2:2447668/1‑100 (MQ=255)
gcttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGG‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAgcg > 1:1750756/11‑100 (MQ=18)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATaagcgaagcg > 2:308633/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGcgcg < 1:1602341/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1421892/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:1519874/1‑100 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1105509/100‑1 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:1939482/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1379932/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:101518/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGTTAATTCAATATATTGCAGG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:6433/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGG‑AT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2683554/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2052756/3‑100 (MQ=21)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1507151/1‑100 (MQ=255)
ggctggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCACA‑GC‑TAGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:840190/11‑100 (MQ=21)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:287713/2‑99 (MQ=17)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCACTATATTGCAGA‑GA‑TTGC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1641264/2‑100 (MQ=11)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1350640/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2152905/2‑100 (MQ=21)
agCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:225696/2‑100 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:594792/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:955987/1‑100 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1011896/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:2395303/1‑98 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑TCAC‑‑GTAGGCCTGTTAAGCGTAGCGCATCAGGCag > 2:537208/1‑99 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCAAT‑CT‑CCGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:87525/9‑98 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatc > 1:183495/8‑97 (MQ=25)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1768415/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1910347/7‑100 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGG‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2240272/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGG‑AA‑CGAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:2515076/7‑96 (MQ=21)
ataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttg > 2:1107756/5‑100 (MQ=17)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:537143/100‑1 (MQ=255)
taaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCAGAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttagc > 2:2112853/4‑97 (MQ=17)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 2:1544002/1‑98 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 1:1879496/100‑1 (MQ=255)
gctgcgTTAACGCCTTATCCGGCCAAC‑AAAATCGTGCAAATACAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:568403/88‑1 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCCGGCATTtttgcctt > 1:493300/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:1162677/1‑100 (MQ=255)
gcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCAGA‑GA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAATttagcgttt > 1:2598292/1‑100 (MQ=17)
gcgTTAACGCCTTATCCCGCCCAC‑ACCATCGTCCAAATCCAATACATCGCACA‑AT‑CTTC‑‑CTCGGCCTCACAACCAGACAGCATCAGGCAATcctgccttt < 2:2294759/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:312692/1‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1507955/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:2527957/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:2363959/1‑100 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:1454594/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1199266/100‑1 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa > 1:1107012/1‑100 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa > 1:1167656/1‑100 (MQ=255)
gCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg < 1:2032122/100‑1 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAACAGGCTTGTATGGc > 2:1451755/1‑100 (MQ=255)
cTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt > 1:600509/1‑100 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 1:465553/100‑1 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt > 2:2497113/1‑100 (MQ=255)
c‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:2397478/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:2107805/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:1619307/100‑1 (MQ=255)
aTCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatt < 2:292363/100‑1 (MQ=255)
gTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt < 2:736842/100‑1 (MQ=255)
gCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg > 1:1011631/1‑100 (MQ=255)
gCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 2:121432/100‑1 (MQ=255)
cAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa > 1:2554022/1‑100 (MQ=255)
cAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa > 2:841699/1‑100 (MQ=255)
aaaTTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 2:554877/100‑1 (MQ=255)
aaTTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATa < 1:332112/100‑1 (MQ=255)
aTTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATag > 2:65050/1‑100 (MQ=255)
ttCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 2:600507/100‑1 (MQ=255)
ttCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 1:2036009/100‑1 (MQ=255)
tCAATACATTCCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAGCAGTCTTGTATGGCTTTTAATTATTCGATagag < 2:1801475/100‑1 (MQ=255)
cAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga < 2:2324699/100‑1 (MQ=255)
|
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
