Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F48 I0 R1
|
252 |
171.1 |
8397611 |
93.1% |
7818175 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
32.8% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 32.8%
| 454.6
/ 249.0
| 314 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (92/101); new base T (90/3); total (210/104) |
| Fisher's exact test for biased strand distribution p-value = 1.01e-18 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
Only 100 of 315 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACG > NC_000913/3705918‑3706113
|
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:180282/1‑100 (MQ=255)
cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa > 1:479657/1‑100 (MQ=255)
catccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 2:3993677/97‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑g > 1:2885079/1‑100 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a > 1:988076/1‑100 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a < 2:1346090/100‑1 (MQ=255)
ggTATACAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a > 1:2759421/1‑100 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑c < 2:3732767/95‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCg < 2:4197409/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCg < 1:923343/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTg > 2:4065163/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGa > 1:3346544/1‑100 (MQ=255)
aCAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGAt > 2:836076/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATa > 2:308829/1‑100 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGc < 2:219682/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAg < 1:1347262/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 2:3966626/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAg < 1:1042068/99‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑CT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc > 2:1645393/1‑99 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCAt > 1:2389468/8‑100 (MQ=17)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCAt > 2:1606354/1‑100 (MQ=255)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑AT‑CC‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCa > 1:3675378/7‑100 (MQ=18)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCa > 2:2963406/6‑100 (MQ=17)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTG‑CA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:1102970/6‑100 (MQ=18)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:3412513/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑‑A‑TTCT‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAg > 1:252764/5‑100 (MQ=18)
gaaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑CA‑AT‑CT‑T‑‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAg > 1:2830811/5‑100 (MQ=18)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2627754/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1979436/3‑100 (MQ=18)
aTGACGGATAAGGCGTTCACGCCGCATCCGTCCTAC‑AAGTTCATGCAATTTTAATAAGTTGCCA‑GA‑TA‑T‑‑‑CCTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1527434/1‑100 (MQ=25)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa < 2:3006328/100‑1 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2714127/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3237597/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:3112745/2‑99 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:776051/2‑98 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1502194/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4050688/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑CA‑AT‑CT‑C‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1888515/2‑100 (MQ=18)
gcccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGAT‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3893438/11‑100 (MQ=17)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAggaa > 2:2838325/1‑97 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2650065/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑CA‑GA‑AA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1816695/1‑99 (MQ=17)
gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑CA‑GA‑AA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:4136408/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:326633/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3868412/1‑98 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑‑A‑TTCT‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:1423190/1‑98 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑A‑AT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2267381/1‑100 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTG‑CA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1712766/1‑97 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TG‑AG‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1309585/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2177069/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTG‑CA‑GG‑AA‑A‑‑‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGCag > 2:3626007/1‑99 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2446499/9‑98 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑CATGG‑GC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1072803/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:254173/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:2163276/9‑100 (MQ=21)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1190945/1‑100 (MQ=255)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:4144737/1‑100 (MQ=255)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:2502378/100‑1 (MQ=255)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGAT‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 2:2109531/8‑97 (MQ=17)
cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:396157/1‑100 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2346684/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3278712/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑A‑AT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:3842269/7‑97 (MQ=21)
ggataaggcgTTCACGCCTTATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑CA‑GA‑GA‑T‑‑‑GGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:3540081/7‑100 (MQ=14)
ggataaggcgTTCACGCCTTATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTG‑AT‑CG‑AT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:621797/7‑100 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3599403/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:860604/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1358885/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑C‑‑‑CTCGTAGGACTGATAAGCGTAGCGCATCAGGCAattc > 1:771647/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GG‑AG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1468528/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GA‑GA‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1899437/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:935024/7‑98 (MQ=21)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:203771/6‑97 (MQ=21)
gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:3679299/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1589448/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTTGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:3771128/1‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:3476437/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3591913/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1620320/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:1182755/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1706227/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3713940/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:2655945/1‑100 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:2167757/1‑100 (MQ=255)
cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:131155/1‑100 (MQ=255)
ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:738607/100‑1 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:2629059/100‑1 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa < 1:672771/100‑1 (MQ=255)
gCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg > 1:3936350/1‑100 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 2:807629/1‑100 (MQ=255)
cTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt > 2:3146875/1‑100 (MQ=255)
tAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt > 2:1068362/1‑100 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 2:3782099/100‑1 (MQ=255)
c‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTTTTTTTTTTTTAGTCTTGTATGGCtttt > 2:3354978/1‑100 (MQ=18)
aaTCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:2605217/100‑1 (MQ=255)
gTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt < 2:549819/100‑1 (MQ=255)
gTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 1:496008/1‑100 (MQ=255)
ccgatctCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:4070815/94‑1 (MQ=255)
ttCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 1:2967100/100‑1 (MQ=255)
aaTACATTG‑CA‑GA‑AT‑T‑‑‑TCCGTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGACTTTGCCATCAGTCACGTATGGCTTTTACTTAGTCGTTAGAGAc > 2:1139590/1‑100 (MQ=25)
|
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACG > NC_000913/3705918‑3706113
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
