Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F70 I1 R1 13 113.0 5677813 94.3% 5354177 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,196,120 G→A intergenic (‑21/+212) thiC ← / ← rsd phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,196,1200GA100.0% 327.4 / NA 92intergenic (‑21/+212)thiC/rsdphosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (42/50);  total (42/50)

CCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAG  >  NC_000913/4196029‑4196214
                                                                                           |                                                                                              
ccTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGc                                                                                        >  1:1865929/1‑100 (MQ=255)
  ttCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCtt                                                                                      >  1:68557/1‑100 (MQ=255)
    ccAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGt                                                                                    >  2:1049999/1‑100 (MQ=255)
     gatcttgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTc                                                                                   <  2:1591435/95‑1 (MQ=255)
     cAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTc                                                                                   <  1:1216816/100‑1 (MQ=255)
     cAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTc                                                                                   >  1:1761970/1‑100 (MQ=255)
      aGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAATTAAAGAAGTGGCTTGTCa                                                                                  >  1:1291890/1‑100 (MQ=255)
       gggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAg                                                                                 <  2:1707878/100‑1 (MQ=255)
       gggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAg                                                                                 <  1:1948217/100‑1 (MQ=255)
       gggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAg                                                                                 <  2:2406150/100‑1 (MQ=255)
        tgtgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCACGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAga                                                                                >  1:1990216/2‑100 (MQ=255)
        ggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAga                                                                                <  1:2580613/100‑1 (MQ=255)
        ggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAga                                                                                <  2:597267/100‑1 (MQ=255)
         gtgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgac                                                                               <  2:1921165/100‑1 (MQ=255)
         gtgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgac                                                                               <  1:2755/100‑1 (MQ=255)
          tgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgatc                                                                              >  1:1591443/1‑98 (MQ=255)
          tgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgacg                                                                              <  2:1324816/100‑1 (MQ=255)
           gtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgacga                                                                             >  1:1587562/1‑100 (MQ=255)
           gtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAgacga                                                                             >  1:356200/1‑100 (MQ=255)
              gATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACgg                                                                          >  2:1496757/1‑100 (MQ=255)
               aTAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGa                                                                         <  2:569033/100‑1 (MQ=255)
               aTAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGa                                                                         <  1:1341385/100‑1 (MQ=255)
                tAAAATGTTGGGCCCCGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTTGCTTGTCAGACGACgg                                                                          <  2:705213/98‑1 (MQ=255)
                 aaaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATg                                                                       >  2:2152596/1‑100 (MQ=255)
                  aaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATg                                                                       <  2:830299/99‑1 (MQ=255)
                  aaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGa                                                                      >  1:1407173/1‑100 (MQ=255)
                  aaaTGTTGGGCCCGGGAGCGATGTTAGCGGCGGAACAGTTTTGTTGCAAACATAGCACATTCCAAAAAGTTAAAGACGTGGCTTTTGAGAAGACGGAtaa                                                                      >  2:1392421/1‑98 (MQ=255)
                   aaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGaa                                                                     <  2:1528144/100‑1 (MQ=255)
                   aaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGaa                                                                     >  1:1115990/1‑100 (MQ=255)
                    aTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAg                                                                    <  2:2232494/100‑1 (MQ=255)
                    aTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAg                                                                    <  2:1556947/100‑1 (MQ=255)
                      gTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCa                                                                  <  1:1315974/100‑1 (MQ=255)
                         gggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCaa                                                                 >  1:2742770/1‑98 (MQ=255)
                         gggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAaga                                                               >  2:324603/1‑100 (MQ=255)
                         gggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAaga                                                               <  2:2287039/100‑1 (MQ=255)
                         gggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAaga                                                               >  1:2119769/1‑100 (MQ=255)
                          ggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAagag                                                              >  1:2619466/1‑100 (MQ=255)
                          ggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAaga                                                               >  1:2129624/1‑99 (MQ=255)
                               gggCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGa                                                          >  1:1397727/1‑99 (MQ=255)
                                ggCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAag                                                                <  2:2633669/92‑1 (MQ=255)
                                 gcgcGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGATGATcg                                                       <  2:506882/100‑1 (MQ=255)
                                 gcgcGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcg                                                       <  1:1594503/100‑1 (MQ=255)
                                      ttgttCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCa                                                  >  1:498903/1‑100 (MQ=255)
                                        gttCGCGGTGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                                                <  1:999630/100‑1 (MQ=255)
                                        gttCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCa                                                  >  1:2498706/1‑98 (MQ=255)
                                        gttCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                                                >  2:648821/1‑100 (MQ=255)
                                        gttCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                                                <  1:98976/100‑1 (MQ=255)
                                          tCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgggg                                              <  2:1939013/100‑1 (MQ=255)
                                           cgcgGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgc                                             >  2:936403/1‑100 (MQ=255)
                                           cgcgGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgc                                             <  1:1806369/100‑1 (MQ=255)
                                             cggcggGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcga                                           >  2:554776/1‑100 (MQ=255)
                                              ggcggGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgat                                          <  2:1761961/100‑1 (MQ=255)
                                                  ggTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcga                                      >  2:2116063/1‑100 (MQ=255)
                                                  ggTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcg                                       <  2:1835659/99‑1 (MQ=255)
                                                   gTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcgat                                     <  2:1995773/100‑1 (MQ=255)
                                                    tCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATa                                    <  2:2516324/100‑1 (MQ=255)
                                                     cAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAg                                   >  1:1458784/1‑100 (MQ=255)
                                                       gTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCa                                 <  1:2654971/100‑1 (MQ=255)
                                                         tttGTTGCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGa                               <  1:2551422/100‑1 (MQ=255)
                                                          ttgttgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGAt                              <  2:2619451/100‑1 (MQ=255)
                                                          ttgttgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGAt                              <  1:554780/100‑1 (MQ=255)
                                                            gttgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTa                            <  1:291881/100‑1 (MQ=255)
                                                            gttgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTa                            <  2:1865920/100‑1 (MQ=255)
                                                            gttgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTa                            <  1:544555/100‑1 (MQ=255)
                                                              tgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAc                          <  2:498900/100‑1 (MQ=255)
                                                              tgCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAc                          >  2:274596/1‑100 (MQ=255)
                                                               gCAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAct                         >  1:853548/1‑100 (MQ=255)
                                                                cAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAActc                        >  2:1414441/1‑100 (MQ=255)
                                                                cAGACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAActc                        <  2:1291884/100‑1 (MQ=255)
                                                                  gACATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCtt                      <  2:2168104/100‑1 (MQ=255)
                                                                    cATAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGt                    <  1:1437997/100‑1 (MQ=255)
                                                                      tAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTc                  >  1:1343807/1‑100 (MQ=255)
                                                                      tAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTc                  <  2:68556/100‑1 (MQ=255)
                                                                      tAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTc                  <  2:1070313/100‑1 (MQ=255)
                                                                      tAGCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTc                  >  2:333898/1‑100 (MQ=255)
                                                                        gCTCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCTCAGGGGCGATGCGATAGCAGATTAACTCTTGTTcc                 >  1:677222/1‑99 (MQ=255)
                                                                          tCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCtt              <  2:1587554/100‑1 (MQ=255)
                                                                          tCATTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCtt              <  2:356197/100‑1 (MQ=255)
                                                                            aTTCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCtt              <  2:2032861/98‑1 (MQ=255)
                                                                             ttCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGc           <  1:2152606/100‑1 (MQ=255)
                                                                              tCCAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCa          <  1:1050005/100‑1 (MQ=255)
                                                                               ccAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAg         >  1:159265/1‑100 (MQ=255)
                                                                               ccAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAg         >  1:1463290/1‑100 (MQ=255)
                                                                               ccAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAg         <  2:2119759/100‑1 (MQ=255)
                                                                               ccAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAATCTTAttaca                >  1:1935874/1‑90 (MQ=255)
                                                                                cAAAAAGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCAATAGCAGATTAACTCTTGTTCACTTCGCAgg        >  1:300102/1‑100 (MQ=255)
                                                                                 aaaaaGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAgct       <  1:1913911/100‑3 (MQ=255)
                                                                                 aaaaaGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGt       >  1:2569345/1‑100 (MQ=255)
                                                                                 aaaaaGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGt       >  1:325189/1‑100 (MQ=255)
                                                                                 aaaaaGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGt       >  2:583179/1‑100 (MQ=255)
                                                                                  aaaaGTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTa      >  1:1703696/1‑100 (MQ=255)
                                                                                      gTTAAAGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAg  >  1:167437/1‑100 (MQ=255)
                                                                                           |                                                                                              
CCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGTTCCCTTCGCAGGTATTAG  >  NC_000913/4196029‑4196214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A