Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F52 I1 R1
|
14 |
89.3 |
4518203 |
92.8% |
4192892 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,318,344 |
G→A |
intergenic (‑55/‑293) |
metY ← / → argG |
tRNA‑Met/argininosuccinate synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,318,344 | 0 | G | A | 98.7%
| 257.0
/ ‑4.5
| 76 | intergenic (‑55/‑293) | metY/argG | tRNA‑Met/argininosuccinate synthetase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (38/37); total (38/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
GGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATA > NC_000913/3318248‑3318439
|
gggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAtt > 1:2028772/1‑100 (MQ=255)
gggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAtt > 1:1606011/1‑100 (MQ=255)
gggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAtt < 2:1606002/100‑1 (MQ=255)
ggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAttt < 1:1747455/100‑1 (MQ=255)
ggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAttt < 2:1400602/100‑1 (MQ=255)
gTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTg > 1:1619804/1‑100 (MQ=255)
ttATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTgg < 2:486580/100‑1 (MQ=255)
aTGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGgtg < 1:1814363/100‑1 (MQ=255)
tGAGCCCGACGAACTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGgtgt > 1:1477748/1‑100 (MQ=255)
gAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTa > 2:1852346/1‑100 (MQ=255)
gAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTa > 1:504291/1‑100 (MQ=255)
gAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTGTGGGTTAAAAATGCGAATACCGCTGGAATTTGGTGTa > 2:1524630/1‑100 (MQ=37)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTAcc < 2:793099/100‑1 (MQ=255)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTAcc < 1:507309/100‑1 (MQ=255)
cccGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCg < 1:2218729/100‑1 (MQ=255)
ccGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCga > 1:1827108/1‑100 (MQ=255)
aGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACggg > 1:367477/1‑100 (MQ=255)
aGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACggg > 2:1413155/1‑100 (MQ=255)
tACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACg > 2:157413/1‑100 (MQ=255)
aCCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGt > 1:326/1‑100 (MQ=255)
ccAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTa < 1:177314/100‑1 (MQ=255)
tgctCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCt < 1:907532/100‑1 (MQ=255)
tCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCa > 2:715263/1‑100 (MQ=255)
tCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCa < 1:838701/100‑1 (MQ=255)
ccACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGTGACATATAATCttaag > 2:561139/1‑96 (MQ=255)
ccACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAg > 2:1973986/1‑100 (MQ=255)
ccACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAg > 2:1656785/1‑100 (MQ=255)
cACCCCGCGCCTGAAACGTGGCAAACTCTACTCGTTTTGGGTAAAAAATGCAAATCCTGCTGGAATTTGCTGTAAAGAGCAGGGACGTAAACTCTGCAgg > 2:1577635/1‑100 (MQ=255)
ccccGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAGTTTGGTTTACCGAGACGGGTCGCAAAATCta > 2:2069383/1‑93 (MQ=255)
ccccGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGAGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCa > 2:1216470/1‑100 (MQ=255)
ccTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAg < 2:317124/99‑1 (MQ=255)
ccTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGt < 1:2072266/100‑1 (MQ=255)
ccTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGt < 1:1656794/100‑1 (MQ=255)
ccTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGt > 2:492730/1‑100 (MQ=255)
gAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGATGTAAAATCTGCAGGCATTATAGTg < 2:937487/98‑1 (MQ=255)
aaaCGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATc < 1:1142199/100‑1 (MQ=255)
gTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACg < 1:2017066/100‑1 (MQ=255)
tGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGc < 2:2239591/100‑1 (MQ=255)
tGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACCGCTGGAATTTGGTGTACTGAGACGGGACTTAAAATCTGCAGGCATTATAGTGATCCAccc < 1:1524639/100‑3 (MQ=255)
cacaTTCTACTCGTTTTGGGTACAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGcc < 1:1577644/95‑1 (MQ=255)
cAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCcac > 1:2131709/1‑100 (MQ=255)
aaTTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATATGCAGGCATTATAGTGATCCACGCCACAt > 2:222994/1‑100 (MQ=255)
cTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTg < 1:342679/100‑1 (MQ=255)
tACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGt > 1:1001458/1‑100 (MQ=255)
tACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGt < 1:1413164/100‑1 (MQ=255)
aCTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc < 1:719854/100‑1 (MQ=255)
aCTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc > 1:1203097/1‑100 (MQ=255)
aCTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc < 2:510632/100‑1 (MQ=255)
cTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCa < 2:1619795/100‑1 (MQ=255)
cGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACATAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAAc > 2:2228027/1‑100 (MQ=255)
gTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAAcn < 1:1336783/100‑2 (MQ=255)
tttGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATTCACGCCACATTTTGTCAACg > 2:636034/1‑98 (MQ=255)
tttGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGtt < 1:469861/100‑1 (MQ=255)
gggTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTAt > 1:1944880/1‑100 (MQ=255)
ggTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGattatt > 2:2191884/1‑100 (MQ=255)
tAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTTAACGttt > 2:1758355/1‑95 (MQ=255)
tAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGc < 2:2131694/100‑1 (MQ=255)
aaaaaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCt > 1:803830/1‑100 (MQ=255)
aaaaaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTATCAACGTTTATTGCt > 1:2221303/1‑100 (MQ=255)
aaaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTaa > 1:602718/1‑100 (MQ=255)
aaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAAt < 2:1613958/100‑1 (MQ=255)
aaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAAt < 2:1614005/100‑1 (MQ=255)
aaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATc < 2:2116916/100‑1 (MQ=255)
tGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAt < 2:504288/100‑1 (MQ=255)
tGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAt > 1:2255167/1‑100 (MQ=255)
cAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgt < 2:546648/100‑1 (MQ=255)
cAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgt > 2:554557/1‑100 (MQ=255)
cttccgatctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgtg < 1:1495128/92‑1 (MQ=255)
aaaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgtg < 2:998108/100‑1 (MQ=255)
aaaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgtg < 1:715269/100‑1 (MQ=255)
aaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGtga > 1:893983/1‑100 (MQ=255)
gctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTgaatgaat > 1:703654/1‑100 (MQ=255)
gctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTgaatgaat > 1:1645369/1‑100 (MQ=255)
gctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTgaatgaat < 2:902484/100‑1 (MQ=255)
gctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTgaatgaat > 1:1095979/1‑100 (MQ=255)
ctgGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAata < 1:157416/100‑1 (MQ=255)
|
GGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATA > NC_000913/3318248‑3318439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
