Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F52 I0 R1
|
129 |
152.3 |
7640533 |
93.0% |
7105695 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,318,344 |
G→A |
62.9% |
intergenic (‑55/‑293) |
metY ← / → argG |
tRNA‑Met/argininosuccinate synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,318,344 | 0 | G | A | 62.9%
| 107.9
/ 133.2
| 137 | intergenic (‑55/‑293) | metY/argG | tRNA‑Met/argininosuccinate synthetase |
| Reads supporting (aligned to +/- strand): ref base G (28/23); new base A (37/49); total (65/72) |
| Fisher's exact test for biased strand distribution p-value = 2.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
Only 100 of 142 total aligned reads displayed.
CGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATATCCA > NC_000913/3318247‑3318443
|
gggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAtt > 2:1315504/1‑100 (MQ=255)
gggTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTCTTGGGTAAAAAATGCAAATACTGCTGGAAtt > 2:2019857/1‑100 (MQ=255)
gTTATGAGCCCGGCGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTg > 1:3788947/1‑100 (MQ=255)
gTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAAttt < 2:991845/99‑1 (MQ=255)
tATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGgt > 1:2530662/1‑100 (MQ=255)
aTGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGgtg > 2:2199474/1‑100 (MQ=255)
aTGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGgtg < 1:2184935/100‑1 (MQ=255)
tGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGgtgt > 2:2148774/1‑100 (MQ=255)
tGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGgtgt > 1:216543/1‑100 (MQ=255)
tGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGgtgt < 2:2990030/100‑1 (MQ=255)
aGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTAc > 2:1898982/1‑100 (MQ=255)
aGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTAc < 2:2122109/100‑1 (MQ=255)
gCCCGACGATCTACCATGCTGCTCCACCCCGCGATTGAAACGTGGCAAATTCTACGCGTTTTGGGTAAAAAATGCAAAGACTGCTGGGATTTGGTGTAcc < 1:1856975/100‑1 (MQ=38)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTAcc < 2:1843086/100‑1 (MQ=255)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTAcc < 1:1021368/100‑1 (MQ=255)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTAcc < 1:799061/100‑1 (MQ=255)
gCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTAcc < 2:916804/100‑1 (MQ=255)
cccGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTActg < 2:3540672/100‑3 (MQ=255)
cccGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCg < 2:662306/100‑1 (MQ=255)
cgacgaGCTACCATGCTGCTCAACCCCGCGCCTGAAACGTGGCAAATTCTACAAAAAAAAAAAAAAAAATGCAAATACTGCTGGGATTTGGTGTACCg < 1:2752154/98‑1 (MQ=255)
cgacgaGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCgag > 2:1358625/1‑100 (MQ=255)
cgacgaGCTACCAGACTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTCTTGGGTAAAAAATGCAAATACTGCTGTAATTTGGTGTAccaa > 1:836944/1‑97 (MQ=38)
gacgaGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCgaga > 2:868138/1‑100 (MQ=255)
aGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACggg < 1:2253916/100‑1 (MQ=255)
gttatcAGTCTGCTCCACCTCGCGCGTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAATATGCAAATACTGCTGGAATTTGGTTTACCGAGACGGGa < 1:2349265/95‑1 (MQ=255)
gCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGCGACGGGa > 2:1598583/1‑100 (MQ=255)
gCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTGTGCGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCTAGACgg > 1:2275710/1‑98 (MQ=255)
cTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGAc < 2:2999824/100‑1 (MQ=255)
aCCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGt > 1:388162/1‑100 (MQ=255)
aCCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTAGATTTAAAAAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGt < 1:1225211/100‑1 (MQ=255)
ccAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTa < 2:602595/100‑1 (MQ=255)
ccAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTa > 1:2755720/1‑100 (MQ=255)
ccAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTa > 2:761042/1‑100 (MQ=255)
ggCTGCTCCACCCCGCGCCTGAAACGTGGCCAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGACTTTGGTGTACCGAGACGGGACGTaaaa > 1:710323/1‑100 (MQ=255)
ggCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTaaaa > 2:167454/1‑100 (MQ=255)
ggCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTaaaa < 1:1643522/100‑1 (MQ=255)
gctCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTg > 1:3771505/1‑100 (MQ=255)
gctCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTg > 2:1034253/1‑100 (MQ=255)
ctCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGc > 1:192567/1‑100 (MQ=255)
tCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCa < 2:2067795/100‑1 (MQ=255)
ccACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAg < 1:404168/100‑1 (MQ=255)
ccACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAg > 1:2437392/1‑100 (MQ=255)
aCCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAgg < 1:1883359/99‑1 (MQ=255)
aCCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGc < 1:2657448/100‑1 (MQ=255)
ccccGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCa > 2:464107/1‑100 (MQ=255)
ccGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATATTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCAt < 1:487571/99‑1 (MQ=255)
gcgcCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATtat < 2:1854960/100‑1 (MQ=255)
gcCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAg < 1:2685009/100‑1 (MQ=255)
cTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTg > 2:3119280/1‑100 (MQ=255)
cTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGt > 1:3764069/1‑99 (MQ=255)
gAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGAt < 2:3261979/100‑1 (MQ=255)
gAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGAAGGGACGTAAAATCTGCAGGCATTATAGTTAt > 1:1608672/1‑100 (MQ=255)
aaaCGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATc < 2:2538953/100‑1 (MQ=255)
gTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACg < 1:2253633/100‑1 (MQ=255)
tGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGc < 1:1950898/100‑1 (MQ=255)
ggCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACg > 1:149423/1‑98 (MQ=255)
ggCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGcc > 2:2376508/1‑100 (MQ=255)
tCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACAtttt < 2:1205886/100‑1 (MQ=255)
tCTACTCGTTTTGGGTAAAAAATGCAAATACTGCGGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACAtttt < 1:2774582/100‑1 (MQ=255)
cTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACAtttt > 2:2697838/1‑99 (MQ=255)
cTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACAtttt < 1:357626/99‑1 (MQ=255)
aCTCGTTTTGGGTAAAAACTGCAAATACTGCTGGAATTGGGTGTGCCGGGACGGGACGTAAAATCTGCAGGCATTATAGTGAGCGACGCCACATTTTGTc < 1:3285258/100‑1 (MQ=255)
aCTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc < 1:2174992/100‑1 (MQ=255)
aCTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc < 1:53852/100‑1 (MQ=255)
cTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTc > 2:2926374/1‑99 (MQ=255)
cTCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTACAATCAGCAGTAATCATACTGATCCACGCCATATATTATc > 1:1041973/1‑99 (MQ=255)
tCGTTTTGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCaa < 1:684886/100‑1 (MQ=255)
gTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACg < 2:3771529/100‑1 (MQ=255)
gTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACg > 2:2367961/1‑100 (MQ=255)
ttGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGttt < 2:375643/100‑1 (MQ=255)
ttGGGTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGttt < 1:1906793/100‑1 (MQ=255)
gggTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTAt < 1:2154020/100‑1 (MQ=255)
ggTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTAtt > 2:303811/1‑100 (MQ=255)
gTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTAtt > 1:243834/1‑99 (MQ=255)
gTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCACTATAGTGATCCACGCCACATTTTGTCAACGTTTATTg < 1:2034858/100‑1 (MQ=255)
gTAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGTCATTATAGTGATCCACGCCACATTTTTTCATCGTTTATTg > 1:693202/1‑100 (MQ=255)
tAAAAAATGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGc > 2:2827677/1‑100 (MQ=255)
tAAAAAATGCAAAAACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGTTCCACGCCACATTTTGTCAACGTTTATTGc < 1:1294905/100‑1 (MQ=255)
aaaaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTa > 2:3382233/1‑100 (MQ=255)
aaaaTGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGTATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCt > 1:1144178/1‑98 (MQ=255)
aaaaTGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTaa > 1:1984376/1‑100 (MQ=255)
aaaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCt > 1:2105012/1‑98 (MQ=255)
aaaTGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAAt < 2:1984386/100‑1 (MQ=255)
aaaTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAAt > 2:670291/1‑100 (MQ=255)
gatctaaaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATc < 1:2017815/95‑1 (MQ=255)
aTGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCa < 2:1867421/100‑1 (MQ=255)
tGCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAt < 2:2242131/100‑1 (MQ=255)
gCAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtg < 1:3118763/100‑1 (MQ=255)
cAAATACTGCTGGGATTTGGTGCACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgt < 1:2578006/100‑1 (MQ=255)
cAAATACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgt > 1:1537944/1‑100 (MQ=255)
aaaTACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgtg < 2:3546829/100‑1 (MQ=255)
aaaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCagatc > 2:2017825/1‑96 (MQ=255)
aaaTACTGCTGGAATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCAtgtg < 2:1067104/100‑1 (MQ=255)
aTACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGtgaa < 1:2148764/100‑1 (MQ=255)
aCTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCGAATCATGtgaatg < 1:2363590/100‑1 (MQ=255)
tgctgGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGtgaatgaa < 2:651646/100‑1 (MQ=255)
gctgGAATTTGGTGTACCGAGACGGGACGTAACATCTGGAGGCATTATAGTGATCCACGCCAAATTTTCTCAACGTTTATTGCTAATCATGTgaatgaat > 1:2576208/1‑100 (MQ=255)
ctgGAATTTGGTGTACCGAGACGTGCCGTAAAATCTGCAGGCATTTTAGTTATCCACGACACATTTTGTCAACGTTTATTGCTAACTATGtgaactaat > 1:1512818/1‑94 (MQ=255)
ggATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATATcc < 2:3269194/100‑1 (MQ=255)
ggATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATACACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATATcc < 1:3342859/100‑1 (MQ=255)
|
CGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAATACTGCTGGGATTTGGTGTACCGAGACGGGACGTAAAATCTGCAGGCATTATAGTGATCCACGCCACATTTTGTCAACGTTTATTGCTAATCATGTGAATGAATATCCA > NC_000913/3318247‑3318443
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
