Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F201 I0 R1 306 176.9 8831342 93.4% 8248473 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,103,769 A→G 28.5% F403L (TTC→CTC)  cpxA ← sensory histidine kinase in two‑component regulatory system with CpxR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,103,7690AG28.5% 286.1 / 156.3 207F403L (TTC→CTC) cpxAsensory histidine kinase in two‑component regulatory system with CpxR
Reads supporting (aligned to +/- strand):  ref base A (77/71);  new base G (28/31);  total (105/102)
Fisher's exact test for biased strand distribution p-value = 6.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.01e-01

Only 100 of 220 total aligned reads displayed.

ACCCAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTC  >  NC_000913/4103672‑4103868
                                                                                                 |                                                                                                   
 cccAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAgcgg                                                                                                  <  2:2251765/100‑1 (MQ=255)
 cccAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAacgg                                                                                                  >  1:3929238/1‑100 (MQ=255)
  ccAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAgcgga                                                                                                 >  2:3245314/1‑100 (MQ=255)
   cAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAacggac                                                                                                <  2:1421904/100‑1 (MQ=255)
       cACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGaa                                                                                            <  2:2230836/100‑1 (MQ=255)
         cGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGaaaa                                                                                          >  1:2549420/1‑100 (MQ=255)
           aTGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATc                                                                                        <  1:235587/100‑1 (MQ=255)
            tgctgcTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCt                                                                                       >  1:896794/1‑100 (MQ=255)
             gctgctGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTg                                                                                      <  1:2250460/100‑1 (MQ=255)
              ctgctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGCTAGAACGGACGGAAAATc                                                                                        >  1:3851319/1‑97 (MQ=255)
              ctgctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGt                                                                                     >  1:2653627/1‑100 (MQ=255)
               ngctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGtt                                                                                    >  2:153/2‑100 (MQ=255)
                gccgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTc                                                                                   >  2:2066044/4‑100 (MQ=255)
                 ctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTcg                                                                                  >  1:2115912/1‑100 (MQ=255)
                 ctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTcg                                                                                  <  1:348326/100‑1 (MQ=255)
                 ctgAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTcg                                                                                  >  2:1507048/1‑100 (MQ=255)
                   gAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTcgcg                                                                                >  2:1925044/1‑100 (MQ=255)
                   gAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTcgcg                                                                                >  2:2352996/1‑100 (MQ=255)
                   gAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTcgcg                                                                                >  2:1372587/1‑100 (MQ=255)
                     aTGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGAt                                                                              <  1:1637675/100‑1 (MQ=255)
                      tGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATc                                                                             >  1:2740234/1‑100 (MQ=255)
                      tGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATc                                                                             >  2:1253395/1‑100 (MQ=255)
                      tGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATc                                                                             <  2:339206/100‑1 (MQ=255)
                       ggCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCt                                                                            >  1:3726062/1‑100 (MQ=255)
                        gCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCtt                                                                           >  1:950546/1‑100 (MQ=255)
                           gTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGCCGGAAAATCTGTTCGCGATCTTCCg                                                                        >  1:2521504/1‑100 (MQ=255)
                            tttCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCgg                                                                       >  2:3484599/1‑100 (MQ=255)
                            tttCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCgg                                                                       <  1:1110655/100‑1 (MQ=255)
                            tttCAACAATAGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTAAGATAGAACGGCCGGCGAATCGGTTCGCGATCTTcag                                                                        >  1:3440256/1‑97 (MQ=255)
                             ttCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCggg                                                                      >  1:1805044/1‑100 (MQ=255)
                              tCAACTATCGCCAGCCCCAAACCTGTTCCTCCAGATTCACGATCGCTTGCTTCATCGGTACGATAGAACTGACGCAAAATCTGTTCGCCATCTTCCggg                                                                      <  1:2534055/99‑1 (MQ=255)
                              tCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGc                                                                     <  1:417441/100‑1 (MQ=255)
                              tCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGc                                                                     <  1:508733/100‑1 (MQ=255)
                               ccacaaTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGCTCACGTGCTTCACCGCTACGATAGAACGGACGGCAAATCCGTTCGCGATCTTCCGGGCt                                                                    >  1:54720/3‑100 (MQ=255)
                                 acaaTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTaa                                                                  >  2:929876/1‑100 (MQ=255)
                                  caaTCGCCAGCCCCAAACCTGTAACGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGAGCTCAc                                                                 >  1:1159709/1‑100 (MQ=255)
                                   aaTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACg                                                                <  2:1353989/100‑1 (MQ=255)
                                   aaTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACg                                                                <  1:4090031/100‑1 (MQ=255)
                                   aaTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACg                                                                >  2:3798867/1‑100 (MQ=255)
                                    aTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGc                                                               >  1:1321695/1‑100 (MQ=255)
                                    aTCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGc                                                               <  2:822980/100‑1 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAg                                                            <  2:4182073/100‑1 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAg                                                            >  1:2210086/1‑100 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAg                                                            >  1:404882/1‑100 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAg                                                            <  1:992849/100‑1 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAg                                                            >  2:3507134/1‑100 (MQ=255)
                                       gCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCACCGGTACGATAGAACGCACGGAACATCTGTTCGCGATCTTCCGGGCTCACGCCAg                                                            >  1:14155/1‑100 (MQ=255)
                                        ccAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGAGATATTTCGGGCTaaaccaagg                                                           >  2:3017298/1‑93 (MQ=255)
                                        ccAGCCCCAAACCTGTACCGCCAGAGTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAAGCTGTTCGCGATCTTCCTGGcgttagccc                                                             <  1:660879/98‑9 (MQ=255)
                                         cAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGa                                                          >  1:2478827/1‑100 (MQ=255)
                                          aGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGAc                                                         <  1:1609378/100‑1 (MQ=255)
                                            ccccAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGCCTAACGCCAGGAcc                                                        >  1:2998859/1‑99 (MQ=255)
                                            ccccAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGTGATCTTCCGGGCTAACGCCAGGACCa                                                       >  1:1050754/1‑100 (MQ=255)
                                            ccccAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCa                                                       <  2:110926/100‑1 (MQ=255)
                                            ccccAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCa                                                       >  1:2727014/1‑100 (MQ=255)
                                               cAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcg                                                    <  2:2744719/100‑1 (MQ=255)
                                                tctccTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcgt                                                   <  2:1568450/97‑1 (MQ=255)
                                                 aaCCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcgtc                                                  >  1:944048/1‑100 (MQ=255)
                                                  aCCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcgtcg                                                 <  2:3687102/100‑1 (MQ=255)
                                                  aCCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcgtcg                                                 <  1:3781745/100‑1 (MQ=255)
                                                   ccTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCAtcgtaga                                                >  1:1568444/1‑97 (MQ=255)
                                                   ccTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATcgtcgt                                                <  2:1057446/100‑1 (MQ=255)
                                                     tGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTcc                                              >  2:4159316/1‑100 (MQ=255)
                                                     tGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTcc                                              <  1:1555364/100‑1 (MQ=255)
                                                       tACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCAc                                            <  2:4286302/100‑1 (MQ=255)
                                                        aCCGCCAGATTCACGATCGCGTGCTTCATCGGTATGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCACCGTCGTCCAcc                                           <  1:2318659/100‑1 (MQ=255)
                                                        aCCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCAcc                                           <  2:562309/100‑1 (MQ=255)
                                                         ccGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCg                                          >  1:2681743/1‑100 (MQ=255)
                                                         ccGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCg                                          >  2:4345400/1‑100 (MQ=255)
                                                         ccGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCg                                          >  2:1186713/1‑100 (MQ=255)
                                                         ccGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCg                                          >  2:3338084/1‑100 (MQ=255)
                                                           gCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGt                                         >  1:2039642/1‑99 (MQ=255)
                                                           gCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTa                                        >  2:2896249/1‑100 (MQ=255)
                                                           gCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTa                                        >  1:4124758/1‑100 (MQ=255)
                                                           gCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTa                                        >  1:2032291/1‑100 (MQ=255)
                                                             cAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAAt                                      >  2:3940590/1‑100 (MQ=255)
                                                               gATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATgg                                    <  2:117321/100‑1 (MQ=255)
                                                                 ttCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTg                                  <  1:1941634/100‑1 (MQ=255)
                                                                  tCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGa                                 >  2:2853401/1‑100 (MQ=255)
                                                                       aTCGCGTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCg                            <  1:2594370/100‑1 (MQ=255)
                                                                          gcgTGCTTCATCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCt                         >  2:441492/1‑100 (MQ=255)
                                                                           cgTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCtt                        <  2:2727029/100‑1 (MQ=255)
                                                                           cgTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCtt                        >  1:3315823/1‑100 (MQ=255)
                                                                             tGCTTCATCAGTACGATAGAGCGGACGGAAAATCTGTTCGCGATGTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTa                      <  2:1046903/100‑1 (MQ=255)
                                                                                ttCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCt                   <  1:1816460/100‑1 (MQ=255)
                                                                                 tCATCGGTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTa                  >  2:3922921/1‑100 (MQ=255)
                                                                                  cATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTAc                 <  1:1507042/100‑1 (MQ=255)
                                                                                   aTCGGTACGATAGAACGGACGGAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTAcc                >  2:2479903/1‑100 (MQ=255)
                                                                                    tCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTAcc                <  1:2407999/99‑1 (MQ=255)
                                                                                      ggTACGATAGAGCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCa             <  1:1090926/100‑1 (MQ=255)
                                                                                      ggTACGATAGAACGGACGGAGAATCTGTTCGCTATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCa             <  1:1184125/100‑1 (MQ=255)
                                                                                         aCGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAg          <  1:1833260/100‑1 (MQ=255)
                                                                                          cGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGc         >  2:795904/1‑100 (MQ=255)
                                                                                           gATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGcc        <  1:81059/100‑1 (MQ=255)
                                                                                            aTAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGccc       <  2:3218340/100‑1 (MQ=255)
                                                                                              agagCGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCAc     <  1:3137401/100‑1 (MQ=255)
                                                                                               gAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACt    >  2:3181369/1‑100 (MQ=255)
                                                                                               gAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACt    >  1:3331126/1‑100 (MQ=255)
                                                                                                 acggacggAGAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTc  <  1:2125621/100‑1 (MQ=255)
                                                                                                 acggacggAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTc  <  2:2576544/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
ACCCAGCCACGATGCTGCTGAATGGCGGTTTCAACAATCGCCAGCCCCAAACCTGTACCGCCAGATTCACGATCGCGTGCTTCATCGGTACGATAGAACGGACGGAAAATCTGTTCGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTC  >  NC_000913/4103672‑4103868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A