mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 15.7% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 15.4% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 78,830 | T→A | 20.2% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 19.5% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 107,553 | (T)9→8 | 100% | intergenic (+79/‑152) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 120,154 | Δ1 bp | 19.6% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 19.4% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 151,519 | A→C | 15.1% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 15.3% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 236,569 | C→T | 72.5% | A168V (GCC→GTC) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 256,449 | T→C | 15.9% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 16.1% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 16.0% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,202 | T→A | 15.3% | intergenic (+34/‑193) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 285,204 | C→T | 16.8% | intergenic (+36/‑191) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 314,255 | T→C | 15.1% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 335,166 | T→A | 18.1% | intergenic (‑144/‑114) | yahC ← / → yahD | putative inner membrane protein/ankyrin repeat protein |
| RA | 349,717 | T→C | 22.6% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 379,603 | C→T | 22.6% | intergenic (‑32/+3) | frmA ← / ← frmR | alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase/regulator protein that represses frmRAB operon |
| JC | 380,020 | (G)10→7 | 100% | intergenic (‑139/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| RA | 380,022:1 | (G)10→11 | 100% | intergenic (‑141/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| RA | 410,479 | A→G | 100% | S112S (TCA→TCG) | mak → | manno(fructo)kinase |
| RA | 420,470 | A→G | 41.7% | T294A (ACG→GCG) | brnQ → | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
| RA | 426,471 | G→A | 69.5% | R112H (CGT→CAT) | tgt → | tRNA‑guanine transglycosylase |
| RA | 432,193:1 | +G | 100% | intergenic (‑180/+119) | tsx ← / ← yajI | nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein |
| RA | 454,853 | T→C | 22.9% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 23.3% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 467,839 | T→C | 21.3% | V143A (GTC→GCC) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
| RA | 561,696:1 | (G)6→7 | 100% | coding (2000/2604 nt) | sfmD → | putative outer membrane export usher protein |
| RA | 569,160 | G→T | 16.9% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 16.6% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 603,391 | C→G | 16.8% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 16.8% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 17.3% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 654,560 | A→C | 16.6% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 15.6% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 657,531 | T→G | 16.2% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 17.0% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 16.5% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 669,244 | T→C | 26.2% | intergenic (‑208/+52) | rsfS ← / ← cobC | ribosomal silencing factor/putative alpha‑ribazole‑5'‑P phosphatase |
| RA | 693,023 | T→G | 15.4% | K119T (AAG→ACG) | ybeZ ← | heat shock protein, putative NTPase; PhoH‑like protein |
| RA | 693,030 | C→A | 15.3% | V117L (GTA→TTA) | ybeZ ← | heat shock protein, putative NTPase; PhoH‑like protein |
| RA | 715,849 | A→G | 63.6% | L146L (TTA→TTG) | ybfP → | lipoprotein |
| RA | 730,389 | A→T | 16.0% | E269D (GAA→GAT) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 740,004 | G→A | 22.1% | M166I (ATG→ATA) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 741,817 | C→T | 38.8% | G247D (GGC→GAC) | dtpD ← | dipeptide and tripeptide permease D |
| RA | 805,312 | G→T | 16.7% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 16.4% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 887,392 | T→A | 17.2% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 887,393 | T→A | 18.3% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 922,316:1 | +C | 18.5% | intergenic (+23/+50) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 926,168 | C→T | 18.0% | intergenic (‑197/+57) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,174 | A→T | 18.8% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 19.3% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 953,802 | A→G | 100% | V222A (GTA→GCA) | focA ← | formate channel |
| RA | 1,004,741 | T→G | 15.3% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,020,958 | A→T | 17.7% | intergenic (‑39/‑180) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| RA | 1,053,516:1 | (G)6→7 | 100% | coding (2663/2745 nt) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,064,160 | T→C | 15.4% | L42P (CTG→CCG) ‡ | yccE → | uncharacterized protein |
| RA | 1,064,161 | G→A | 15.4% | L42L (CTG→CTA) ‡ | yccE → | uncharacterized protein |
| RA | 1,143,641 | G→A | 100% | H243Y (CAT→TAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,156,112 | T→C | 25.2% | A117A (GCT→GCC) | holB → | DNA polymerase III, delta prime subunit |
| RA | 1,187,090 | G→C | 15.0% | intergenic (+20/+29) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,187,091 | T→A | 15.0% | intergenic (+21/+28) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,197,853 | T→C | 63.5% | N129D (AAT→GAT) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,211,610 | A→G | 17.1% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 17.1% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 16.6% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,212,535 | A→G | 41.6% | intergenic (‑532/+168) | iraM ← / ← ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| RA | 1,232,481 | C→T | 16.3% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 16.5% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,246,073 | C→T | 100% | G435D (GGC→GAC) | treA ← | periplasmic trehalase |
| RA | 1,311,830 | A→G | 16.3% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 16.6% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,329,743 | G→A | 29.6% | V138M (GTG→ATG) | sohB → | inner membrane protein, S49 peptidase family protein |
| RA | 1,446,357:1 | +T | 15.4% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,489,197 | C→T | 100% | D322D (GAC→GAT) | aldA → | aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,517,481 | C→G | 17.2% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 17.1% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,520,080 | G→T | 19.3% | intergenic (+16/‑182) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,520,083 | A→C | 19.0% | intergenic (+19/‑179) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,533,713 | A→C | 15.6% | F47V (TTT→GTT) | yddH ← | flavin reductase like‑protein |
| RA | 1,543,754 | T→C | 29.1% | T103A (ACG→GCG) | narU ← | nitrate/nitrite transporter |
| RA | 1,572,928 | C→G | 15.3% | A759P (GCA→CCA) | pqqL ← | putative periplasmic M16 family zinc metalloendopeptidase |
| RA | 1,579,563 | G→T | 17.2% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 17.1% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 16.3% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 15.6% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,594,256 | (C)8→7 | 100% | pseudogene (3732/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,608,704 | A→G | 15.9% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 15.8% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,620,224 | C→G | 16.7% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 17.5% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,698,281 | A→G | 65.7% | V300V (GTT→GTC) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,703,593 | A→G | 18.6% | I239T (ATC→ACC) | ydgJ ← | putative oxidoreductase |
| RA | 1,703,598 | C→T | 17.2% | R237R (CGG→CGA) | ydgJ ← | putative oxidoreductase |
| RA | 1,730,999 | T→C | 35.0% | F638S (TTT→TCT) | lhr → | putative ATP‑dependent helicase |
| RA | 1,736,097 | T→A | 16.7% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 16.0% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,743,165 | C→G | 15.1% | V26V (GTG→GTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,755,639 | G→A | 100% | intergenic (‑498/‑59) | ydhZ ← / → pykF | uncharacterized protein/pyruvate kinase I |
| RA | 1,795,227 | A→T | 17.3% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 17.4% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 18.0% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,799,370 | Δ1 bp | 16.4% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 16.2% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,856,333 | T→G | 16.4% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 16.0% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,864,758 | G→A | 16.4% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 15.9% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,868,250 | A→G | 100% | Y448C (TAC→TGC) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,868,859 | Δ1 bp | 15.1% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,883,027 | C→G | 17.5% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter |
| RA | 1,903,571 | A→G | 61.7% | T164A (ACC→GCC) | manY → | mannose‑specific enzyme IIC component of PTS |
| RA | 1,926,882 | C→A | 19.1% | G653V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,888 | C→A | 19.8% | G651V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,891 | G→C | 19.7% | S650* (TCA→TGA) | ptrB ← | protease II |
| RA | 1,926,894 | T→G | 19.2% | D649A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,926,900 | T→G | 21.4% | D647A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,950,955 | Δ1 bp | 17.3% | coding (124/567 nt) | yecD → | isochorismatase family protein |
| RA | 1,950,966:1 | +C | 16.1% | coding (135/567 nt) | yecD → | isochorismatase family protein |
| RA | 1,977,224:1 | +A | 15.1% | intergenic (‑85/+42) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| RA | 1,977,227 | T→A | 15.9% | intergenic (‑88/+39) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| RA | 1,977,231 | Δ1 bp | 15.9% | intergenic (‑92/+35) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,999,231 | T→A | 18.5% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,018,260 | (A)8→7 | 100% | coding (315/444 nt) | fliJ → | flagellar protein |
| RA | 2,028,158 | G→C | 16.2% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 16.9% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 16.3% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,032,336 | G→C | 16.4% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,081,057 | A→G | 16.0% | V69A (GTG→GCG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,081,058 | C→T | 15.8% | V69M (GTG→ATG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,081,688 | A→T | 17.7% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,085,677 | A→G | 15.5% | intergenic (‑152/+27) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,089,854 | A→T | 15.6% | intergenic (‑141/‑142) | yefM ← / → hisL | antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,304,221 | C→T | 24.3% | A106V (GCC→GTC) | eco → | ecotin, a serine protease inhibitor |
| RA | 2,314,800 | A→C | 16.6% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 17.7% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,323,275 | T→A | 18.1% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 18.3% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 17.5% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 17.8% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 17.1% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,469,733 | (T)8→7 | 100% | coding (603/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,470,410 | (T)7→6 | 100% | coding (1280/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,474,878 | T→C | 15.2% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 15.6% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,483,900 | T→A | 17.5% | V49D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,483,906 | T→A | 17.5% | I51N (ATT→AAT) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,483,912 | T→A | 18.0% | V53D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,516,689 | T→C | 100% | T382A (ACG→GCG) | yfeA ← | putative diguanylate cyclase |
| RA | 2,519,222 | T→G | 16.2% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 16.6% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,553,210 | A→G | 73.7% | K287E (AAA→GAA) | amiA → | N‑acetylmuramoyl‑l‑alanine amidase I |
| RA | 2,596,874 | Δ1 bp | 18.3% | intergenic (‑137/+31) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,879:1 | +G | 19.9% | intergenic (‑142/+26) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,632,584 | A→T | 16.7% | intergenic (‑49/+20) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,586 | G→C | 15.9% | intergenic (‑51/+18) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,588 | A→T | 16.1% | intergenic (‑53/+16) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,651,755 | G→A | 27.9% | P178L (CCT→CTT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,652,855:1 | (G)6→7 | 100% | coding (362/846 nt) | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,654,545 | A→G | 33.6% | L130P (CTG→CCG) | sseB ← | rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,673,783 | G→A | 16.1% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 16.2% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,791 | A→C | 15.4% | intergenic (+23/+25) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 15.0% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,716,030 | T→G | 15.4% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 15.1% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 15.7% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 15.5% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 15.7% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,731,312 | G→A | 100% | intergenic (‑155/+288) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,750,073 | G→T | 15.3% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 16.3% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,753,986 | A→T | 17.8% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,758,920 | C→T | 16.6% | intergenic (+64/‑65) | alpA → / → yfjI | CP4‑57 prophage; DNA‑binding transcriptional activator/CP4‑57 prophage; uncharacterized protein |
| RA | 2,758,927 | A→G | 16.6% | intergenic (+71/‑58) | alpA → / → yfjI | CP4‑57 prophage; DNA‑binding transcriptional activator/CP4‑57 prophage; uncharacterized protein |
| RA | 2,761,620 | T→G | 15.2% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,767,667 | T→G | 17.2% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 18.1% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,768,615 | G→T | 15.4% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,790,586 | T→C | 24.2% | L202P (CTG→CCG) | lhgO → | L‑2‑hydroxyglutarate oxidase |
| RA | 2,809,774:1 | (T)7→8 | 100% | coding (158/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,810,872 | C→T | 15.2% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 15.3% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 19.3% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 19.3% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,856,887 | C→T | 32.3% | intergenic (‑81/‑206) | ygbA ← / → mutS | uncharacterized protein/methyl‑directed mismatch repair protein |
| RA | 2,866,592:1 | +C | 100% | coding (960/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,967,887 | G→A | 25.1% | A183V (GCC→GTC) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 2,971,151 | T→C | 15.7% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 15.1% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 15.5% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,980,746 | C→T | 15.1% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 3,007,187 | A→T | 32.5% | D309V (GAC→GTC) | ygeW → | putative carbamoyltransferase |
| RA | 3,008,075 | A→G | 100% | D189G (GAC→GGC) | ygeX → | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,057,140 | A→G | 16.3% | intergenic (‑191/+38) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 16.4% | intergenic (‑196/+33) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 16.7% | intergenic (‑201/+28) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,066,319 | Δ1 bp | 16.9% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,067,320 | A→T | 16.4% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,067,323 | A→T | 15.9% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,156,590 | C→A | 15.9% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 15.8% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,171,852 | C→T | 15.1% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,182,712 | G→A | 69.8% | A55T (GCC→ACC) | zupT → | zinc transporter |
| RA | 3,183,345:1 | +T | 19.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 19.6% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,194,516 | A→G | 100% | K551K (AAA→AAG) | yqiK → | PHB family membrane protein, function unknown |
| RA | 3,202,678 | C→G | 15.8% | P263R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,685 | A→G | 17.3% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,686 | C→T | 16.4% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,693 | C→G | 17.2% | P268R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,249,628 | G→A | 25.1% | G85D (GGC→GAC) | yqjD → | membrane‑anchored ribosome‑binding protein |
| RA | 3,298,809 | A→G | 22.8% | V13A (GTG→GCG) | yraR ← | putative nucleoside‑diphosphate‑sugar epimerase |
| RA | 3,322,698 | A→G | 16.0% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 16.2% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 16.9% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 16.9% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,352,673 | T→C | 100% | E118G (GAA→GGA) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,361,104 | T→C | 41.6% | intergenic (+488/‑72) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,379,266:1 | (C)7→8 | 100% | coding (732/1128 nt) | zapE ← | divisome ATPase |
| RA | 3,411,299 | T→C | 100% | V10A (GTA→GCA) | fis → | global DNA‑binding transcriptional dual regulator |
| RA | 3,471,357 | C→T | 18.6% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 17.4% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 17.6% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,486,225 | A→T | 15.4% | K36* (AAA→TAA) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,512,561 | Δ1 bp | 68.6% | intergenic (‑217/+73) | yhfZ ← / ← trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| RA | 3,520,513 | T→C | 20.9% | D64G (GAT→GGT) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,542,093 | G→A | 69.9% | V563M (GTG→ATG) | feoB → | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,570,714:1 | +T | 15.2% | coding (606/1974 nt) | glgX ← | glycogen debranching enzyme |
| MC JC | 3,582,206 | Δ1,222 bp | 100% | IS1‑mediated | [yhhZ]–yrhA | [yhhZ], yrhA |
| RA | 3,595,315 | (A)5→4 | 100% | coding (166/1278 nt) | livM ← | branched‑chain amino acid ABC transporter permease |
| RA | 3,646,678 | G→A | 24.2% | G127D (GGC→GAC) | gor → | glutathione oxidoreductase |
| RA | 3,648,144 | (T)7→6 | 100% | intergenic (‑356/‑384) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,705,970 | G→A | 29.0% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,971 | C→A | 29.6% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,978 | A→C | 30.4% | intergenic (‑188/+120) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 42.0% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 42.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,017 | C→T | 31.3% | intergenic (‑227/+81) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,729,400:1 | +T | 15.2% | intergenic (‑29/+43) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,405 | C→G | 17.1% | intergenic (‑34/+38) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,408 | C→G | 15.8% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,414 | Δ1 bp | 15.8% | intergenic (‑43/+29) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,810,321 | T→C | 15.1% | intergenic (+17/+22) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,831,757 | C→T | 15.9% | A434V (GCC→GTC) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,761 | C→G | 16.6% | A435A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,764 | C→G | 16.0% | A436A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,891,502 | C→G | 16.3% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 15.2% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,920,796 | T→C | 15.1% | A31A (GCA→GCG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,920,809 | G→A | 17.1% | P27L (CCG→CTG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,951,559:1 | +A | 28.8% | pseudogene (18/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| RA | 3,952,380 | G→A | 73.2% | L60L (CTG→CTA) | ilvM → | acetolactate synthase 2 small subunit |
| RA | 3,952,569 | C→T | 74.7% | A29V (GCG→GTG) | ilvE → | branched‑chain amino acid aminotransferase |
| RA | 4,017,217:1 | +A | 15.0% | intergenic (+25/‑116) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,051,259 | G→T | 16.7% | intergenic (‑494/‑88) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,051,262 | A→C | 16.6% | intergenic (‑497/‑85) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,070,410 | C→A | 16.0% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,103,769 | A→G | 28.5% | F403L (TTC→CTC) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,113,473 | T→C | 19.0% | L61L (TTG→CTG) ‡ | uspD → | stress‑induced protein |
| RA | 4,113,474 | T→A | 19.6% | L61* (TTG→TAG) ‡ | uspD → | stress‑induced protein |
| RA | 4,113,475 | G→A | 18.9% | L61L (TTG→TTA) ‡ | uspD → | stress‑induced protein |
| RA | 4,115,214 | C→T | 30.2% | K122K (AAG→AAA) | glpX ← | fructose 1,6‑bisphosphatase II |
| RA | 4,128,197 | T→C | 25.4% | T67A (ACC→GCC) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,177,171 | T→A | 17.9% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 16.5% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,214,649 | A→T | 31.2% | I124F (ATC→TTC) | metA → | homoserine O‑transsuccinylase |
| RA | 4,214,964 | A→G | 65.7% | I229V (ATT→GTT) | metA → | homoserine O‑transsuccinylase |
| RA | 4,223,854 | T→C | 17.4% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 17.5% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,243,370 | C→T | 26.5% | L49L (CTG→CTA) | malG ← | maltose transporter subunit |
| RA | 4,261,358 | T→A | 16.9% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 16.4% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 15.1% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,270,142 | G→A | 15.1% | intergenic (+15/‑96) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,144 | G→C | 15.2% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,146 | T→C | 15.1% | intergenic (+19/‑92) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,291,512 | G→A | 16.6% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 17.0% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,295,744 | G→A | 25.4% | A422T (GCT→ACT) | gltP → | glutamate/aspartate:proton symporter |
| RA | 4,296,060 | C→T | 100% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,337,024 | G→A | 100% | S3L (TCG→TTG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,376,280 | G→A | 15.1% | intergenic (+15/‑37) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,291 | T→C | 16.7% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,377,791 | A→T | 16.0% | intergenic (‑69/+20) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,377,792 | A→T | 16.4% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,382,091 | C→T | 22.8% | W76* (TGG→TGA) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,397,557 | G→T | 100% | G49V (GGT→GTT) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,410,037 | T→C | 15.1% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,053 | (T)9→8 | 100% | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,472,434 | G→A | 17.6% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 17.6% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,494,883:1 | (A)7→8 | 100% | coding (261/564 nt) | idnK → | D‑gluconate kinase, thermosensitive |
| RA | 4,520,500 | Δ1 bp | 16.8% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 16.5% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,573,528 | A→G | 100% | pseudogene (1115/1503 nt) | yjiT → | pseudogene |
| RA | 4,638,193:1 | (C)6→7 | 100% | coding (16/1353 nt) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423703–3424601 | 3424601 | 1–899 | 97 [96] | [94] 97 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| * | * | ÷ | NC_000913 | 3621160–3622298 | 3622651–3622397 | 100–1492 | 100 [95] | [96] 99 | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 34 (0.240) | 14/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 20044 | NA (NA) | 8 (0.050) | 5/168 | NT | NA | noncoding (520/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 20084 | NA (NA) | noncoding (480/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 39151 = | NA (NA) | 12 (0.080) | 7/164 | NT | NA | noncoding (1/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 39181 = | NA (NA) | noncoding (31/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 39200 | NA (NA) | 12 (0.080) | 4/164 | NT | NA | noncoding (50/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 39232 | NA (NA) | noncoding (82/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 50326 | NA (NA) | 20 (0.140) | 9/164 | NT | NA | intergenic (+24/+54) | folA/apaH | dihydrofolate reductase/diadenosine tetraphosphatase |
| ? | NC_000913 | = 50359 | NA (NA) | noncoding (33/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 72136 = | NA (NA) | 9 (0.060) | 8/164 | NT | NA | noncoding (1/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 72169 = | NA (NA) | noncoding (34/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 117721 | 114 (0.730) | 20 (0.140) | 10/162 | NT | 15.7% | intergenic (‑172/+31) | ppdD/nadC | putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase |
| ? | NC_000913 | = 117731 | 111 (0.780) | intergenic (‑182/+21) | ppdD/nadC | putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase | |||||
| * | ? | NC_000913 | = 157673 | 139 (0.880) | 22 (0.150) | 11/164 | NT | 15.1% | coding (60/480 nt) | folK | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
| ? | NC_000913 | = 157701 | 119 (0.820) | coding (32/480 nt) | folK | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase | |||||
| * | ? | NC_000913 | = 213635 | NA (NA) | 16 (0.110) | 9/164 | NT | NA | noncoding (4/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 213668 | NA (NA) | noncoding (37/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 67 (0.460) | 16/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 56 (0.390) | 17/164 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 84 (0.570) | 19/168 | NT | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 44 (0.290) | 17/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 226704 = | NA (NA) | 17 (0.110) | 6/170 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 49 (0.330) | 17/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 82 (0.570) | 20/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228022 | NA (NA) | 29 (0.200) | 12/164 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 55 (0.370) | 15/170 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 34 (0.230) | 7/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228721 = | NA (NA) | 71 (0.490) | 12/166 | NT | NA | intergenic (+59/‑35) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228745 = | NA (NA) | intergenic (+83/‑11) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 258309 | NA (NA) | 13 (0.090) | 6/166 | NT | NA | noncoding (367/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 279590 | NA (NA) | noncoding (341/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 258602 | NA (NA) | 43 (0.290) | 11/168 | NT | NA | noncoding (74/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 279836 | NA (NA) | noncoding (95/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 271191 | NA (NA) | 9 (0.060) | 4/166 | NT | NA | noncoding (651/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 271214 | NA (NA) | noncoding (674/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 274213 | NA (NA) | 79 (0.530) | 18/168 | NT | NA | noncoding (937/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274218 | NA (NA) | noncoding (932/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 33 (0.230) | 14/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 40 (0.260) | 13/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 12 (0.080) | 6/164 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 39 (0.280) | 11/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274882 | NA (NA) | 12 (0.080) | 10/168 | NT | NA | noncoding (268/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274899 | NA (NA) | noncoding (251/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 29 (0.190) | 12/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 275007 | NA (NA) | 66 (0.430) | 17/172 | NT | NA | noncoding (143/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 277679 = | NA (NA) | 5 (0.030) | 4/164 | NT | NA | noncoding (5/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 277704 = | NA (NA) | noncoding (30/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 277706 | NA (NA) | 17 (0.120) | 10/164 | NT | NA | noncoding (32/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 277737 | NA (NA) | noncoding (63/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 315642 = | NA (NA) | 33 (0.220) | 15/168 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315671 = | NA (NA) | noncoding (443/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 42 (0.280) | 13/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 44 (0.290) | 13/170 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 11 (0.070) | 5/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 26 (0.180) | 6/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 349605 = | NA (NA) | 14 (0.100) | 7/164 | NT | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 349938 | NA (NA) | 34 (0.240) | 8/164 | NT | NA | noncoding (334/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349969 | NA (NA) | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 368554 | 115 (0.730) | 20 (0.140) | 8/164 | NT | 15.2% | intergenic (‑134/‑57) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | = 368583 | 117 (0.810) | intergenic (‑163/‑28) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| * | ? | NC_000913 | 377335 = | NA (NA) | 18 (0.120) | 8/164 | NT | NA | noncoding (1/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 377368 = | NA (NA) | noncoding (34/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 379906 = | 155 (0.990) | 17 (0.140) | 9/140 | NT | 15.0% | intergenic (‑25/+163) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| ? | NC_000913 | 379959 = | 71 (0.580) | intergenic (‑78/+110) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 38 (0.260) | 11/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 39 (0.270) | 16/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 17 (0.120) | 11/160 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381825 | NA (NA) | 24 (0.170) | 10/164 | NT | NA | noncoding (566/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381833 | NA (NA) | noncoding (574/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381837 | NA (NA) | 13 (0.090) | 8/166 | NT | NA | noncoding (578/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 68 (0.460) | 16/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 26 (0.180) | 10/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 6 (0.040) | 5/168 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 395086 = | 146 (0.930) | 22 (0.160) | 11/160 | NT | 15.2% | coding (581/624 nt) | yaiV | putative transcriptional regulator |
| ? | NC_000913 | 395119 = | 115 (0.820) | coding (614/624 nt) | yaiV | putative transcriptional regulator | |||||
| * | ? | NC_000913 | = 409055 | NA (NA) | 21 (0.150) | 8/164 | NT | NA | noncoding (4/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 409088 | NA (NA) | noncoding (37/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 409056 = | NA (NA) | 19 (0.130) | 10/164 | NT | NA | noncoding (5/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 409089 = | NA (NA) | intergenic (+139/+19) | ykiA/rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function | |||||
| * | ? | NC_000913 | 474269 = | NA (NA) | 15 (0.100) | 11/166 | NT | NA | intergenic (+17/+32) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
| ? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
| * | ? | NC_000913 | = 526755 | 145 (0.920) | 27 (0.180) | 9/168 | NT | 16.4% | coding (3495/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 526775 | 139 (0.940) | coding (3515/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 580768 | 113 (0.720) | 19 (0.150) | 8/146 | NT | 15.4% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 117 (0.910) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 699504 | NA (NA) | 9 (0.060) | 6/164 | NT | NA | noncoding (80/98 nt) | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877676 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 705938 | NA (NA) | 19 (0.130) | 7/166 | NT | NA | intergenic (+48/‑155) | nagE/glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| ? | NC_000913 | = 705965 | NA (NA) | intergenic (+75/‑128) | nagE/glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 20 (0.130) | 11/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 734728 = | NA (NA) | 44 (0.290) | 15/170 | NT | 39.0% | pseudogene (596/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 734759 = | 72 (0.460) | pseudogene (627/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | = 734801 | NA (NA) | 11 (0.070) | 9/168 | NT | NA | pseudogene (669/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | = 734817 | NA (NA) | pseudogene (685/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | = 774622 | 131 (0.830) | 23 (0.160) | 10/166 | NT | 15.9% | intergenic (+20/‑130) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| ? | NC_000913 | = 774648 | 122 (0.830) | intergenic (+46/‑104) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase | |||||
| * | ? | NC_000913 | 780398 = | 161 (1.020) | 27 (0.200) | 9/154 | NT | 17.2% | intergenic (+9/‑156) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | NC_000913 | 780432 = | 121 (0.890) | intergenic (+43/‑122) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
| * | ? | NC_000913 | 805804 = | NA (NA) | 15 (0.100) | 10/164 | NT | NA | noncoding (1/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 805836 = | NA (NA) | noncoding (33/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 832307 = | NA (NA) | 4 (0.030) | 3/164 | NT | NA | noncoding (19/98 nt) | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877676 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 937227 | NA (NA) | 11 (0.080) | 5/162 | NT | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 15 (0.110) | 8/158 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | NC_000913 | 1069018 = | 128 (0.810) | 20 (0.140) | 10/164 | NT | 15.0% | coding (822/1329 nt) | rutG | pyrimidine permease |
| ? | NC_000913 | 1069048 = | 108 (0.750) | coding (792/1329 nt) | rutG | pyrimidine permease | |||||
| * | ? | NC_000913 | = 1269275 | NA (NA) | 28 (0.200) | 8/162 | NT | 20.3% | coding (1/108 nt) | ldrA | toxic polypeptide, small |
| ? | NC_000913 | = 1269313 | 121 (0.770) | intergenic (‑38/+390) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | 1269306 = | 117 (0.740) | 22 (0.150) | 9/162 | NT | 19.4% | intergenic (‑31/+397) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1270354 = | 77 (0.540) | intergenic (‑9/+395) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
| * | ? | NC_000913 | 1269645 = | 109 (0.690) | 44 (0.310) | 10/160 | NT | 31.0% | intergenic (‑370/+58) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1270172 = | NA (NA) | intergenic (‑362/+66) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | = 1269694 | 110 (0.700) | 20 (0.140) | 7/166 | NT | 20.2% | intergenic (‑419/+9) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | = 1270193 | 56 (0.380) | intergenic (‑383/+45) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 154 (1.030) | 94/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 87 (1.110) +44 bp |
14/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1486986 = | 114 (0.730) | 20 (0.150) | 8/156 | NT | 16.5% | intergenic (+23/‑249) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| ? | NC_000913 | 1487021 = | 102 (0.740) | intergenic (+58/‑214) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding | |||||
| * | ? | NC_000913 | 1670955 = | 101 (0.640) | 19 (0.140) | 10/152 | NT | 17.8% | intergenic (+3/‑421) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | NC_000913 | 1670995 = | 90 (0.670) | intergenic (+43/‑381) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_000913 | 1748825 = | 119 (0.760) | 18 (0.130) | 8/160 | NT | 15.7% | coding (735/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | 1748852 = | 87 (0.620) | coding (708/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | = 1843797 | NA (NA) | 11 (0.080) | 9/166 | NT | NA | noncoding (74/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 1843810 | NA (NA) | noncoding (87/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 1852545 = | NA (NA) | 16 (0.120) | 8/156 | NT | NA | intergenic (+17/+76) | pncA/ydjE | nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | 1852562 = | NA (NA) | noncoding (1/36 nt) | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 1877275 | 118 (0.750) | 20 (0.140) | 9/162 | NT | 15.4% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | NC_000913 | = 1877290 | 113 (0.790) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | NC_000913 | 2042116 = | 116 (0.740) | 22 (0.160) | 13/158 | NT | 17.7% | intergenic (+91/‑252) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| ? | NC_000913 | 2042149 = | 102 (0.730) | intergenic (+124/‑219) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 34 (0.240) | 9/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2232735 | NA (NA) | 9 (0.060) | 8/166 | NT | NA | intergenic (+7/‑143) | cdd/sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| ? | NC_000913 | = 2232765 | NA (NA) | noncoding (30/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2304590 | 130 (0.830) | 27 (0.190) | 12/164 | NT | 20.6% | noncoding (174/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304608 | 89 (0.620) | noncoding (192/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2304653 | 46 (0.290) | 35 (0.240) | 7/164 | NT | 24.3% | noncoding (237/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304782 | 176 (1.220) | noncoding (366/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2304696 | NA (NA) | 18 (0.120) | 5/164 | NT | 24.9% | noncoding (280/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304728 | 59 (0.380) | noncoding (312/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2340364 | NA (NA) | 20 (0.140) | 7/164 | NT | NA | noncoding (52/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2340394 | NA (NA) | noncoding (82/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2393130 = | NA (NA) | 18 (0.120) | 9/170 | NT | NA | intergenic (‑89/+75) | nuoM/nuoL | NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2511439 | NA (NA) | 14 (0.100) | 8/164 | NT | NA | noncoding (88/88 nt) | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 2593024 | NA (NA) | 12 (0.080) | 8/164 | NT | NA | noncoding (47/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2593056 | NA (NA) | noncoding (79/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2597686 = | NA (NA) | 17 (0.120) | 9/166 | NT | NA | noncoding (14/46 nt) | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2597714 = | NA (NA) | noncoding (42/46 nt) | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2617939 = | NA (NA) | 15 (0.100) | 6/164 | NT | NA | intergenic (+2/+136) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation |
| ? | NC_000913 | 2617967 = | NA (NA) | intergenic (+30/+108) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation | |||||
| * | ? | NC_000913 | = 2700077 | 129 (0.820) | 22 (0.160) | 13/154 | NT | 15.1% | intergenic (+154/+40) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein |
| ? | NC_000913 | = 2700087 | 136 (1.000) | intergenic (+164/+30) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein | |||||
| * | ? | NC_000913 | 2727847 = | NA (NA) | 17 (0.110) | 7/170 | NT | NA | noncoding (1338/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727872 = | NA (NA) | noncoding (1313/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 84 (0.570) | 14/166 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 81 (0.540) | 18/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2775873 = | 150 (0.950) | 24 (0.170) | 10/162 | NT | 15.4% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| ? | NC_000913 | 2775896 = | 128 (0.900) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
| * | ? | NC_000913 | 2794028 = | NA (NA) | 12 (0.080) | 9/166 | NT | NA | noncoding (1/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 2794059 = | NA (NA) | noncoding (32/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 2798052 = | NA (NA) | 14 (0.090) | 7/174 | NT | NA | intergenic (+8/+39) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated |
| ? | NC_000913 | 2798084 = | NA (NA) | intergenic (+40/+7) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | NC_000913 | 2835067 = | NA (NA) | 15 (0.100) | 8/164 | NT | NA | noncoding (1/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2835099 = | NA (NA) | noncoding (33/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2837465 = | NA (NA) | 18 (0.130) | 8/162 | NT | NA | noncoding (1/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2837492 = | NA (NA) | intergenic (‑67/+86) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit | |||||
| * | ? | NC_000913 | = 2894837 | NA (NA) | 20 (0.140) | 8/164 | NT | NA | noncoding (30/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2894870 | NA (NA) | noncoding (63/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2950598 = | NA (NA) | 21 (0.150) | 10/158 | NT | NA | intergenic (+25/+37) | argA/recD | amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain |
| ? | NC_000913 | 2950615 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3139625 = | NA (NA) | 28 (0.190) | 12/164 | NT | NA | noncoding (5/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3139655 = | NA (NA) | noncoding (35/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3163644 = | NA (NA) | 13 (0.090) | 5/160 | NT | NA | noncoding (1/30 nt) | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3163674 = | NA (NA) | intergenic (‑193/+41) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A | |||||
| * | ? | NC_000913 | 3194563 = | 172 (1.090) | 31 (0.210) | 10/168 | NT | 16.9% | intergenic (+38/‑203) | yqiK/ibsD | PHB family membrane protein, function unknown/toxic membrane protein |
| ? | NC_000913 | 3194925 = | 142 (0.960) | intergenic (+100/‑216) | ibsD/ibsE | toxic membrane protein/toxic membrane protein | |||||
| * | ? | NC_000913 | 3203112 = | NA (NA) | 25 (0.170) | 7/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
| * | ? | NC_000913 | 3217434 = | NA (NA) | 12 (0.080) | 8/164 | NT | NA | noncoding (1/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3217467 = | NA (NA) | noncoding (34/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3231252 = | NA (NA) | 20 (0.140) | 10/164 | NT | NA | noncoding (1/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 3231282 = | NA (NA) | noncoding (31/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 3241195 = | 139 (0.880) | 23 (0.160) | 16/162 | NT | 16.3% | coding (550/552 nt) | ygjV | Imp‑YgjV family inner membrane protein |
| ? | NC_000913 | 3241224 = | 110 (0.770) | coding (521/552 nt) | ygjV | Imp‑YgjV family inner membrane protein | |||||
| * | ? | NC_000913 | 3281702 = | NA (NA) | 11 (0.080) | 8/164 | NT | NA | noncoding (1/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3281734 = | NA (NA) | noncoding (33/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3296999 = | NA (NA) | 21 (0.150) | 12/164 | NT | NA | noncoding (1/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3297032 = | NA (NA) | noncoding (34/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3344335 = | 114 (0.730) | 20 (0.130) | 11/168 | NT | 15.1% | coding (392/726 nt) | lptB | lipopolysaccharide export ABC transporter ATPase |
| ? | NC_000913 | 3344356 = | 117 (0.790) | coding (413/726 nt) | lptB | lipopolysaccharide export ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3427251 | NA (NA) | 21 (0.140) | 6/168 | NT | 27.4% | noncoding (1512/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4209670 = | 59 (0.380) | noncoding (1524/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 3428910 = | 18 (0.110) | 13 (0.090) | 6/168 | NT | 28.0% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | 3428937 = | 50 (0.340) | intergenic (‑175/‑299) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 27 (0.190) | 13/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 16 (0.110) | 7/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 20 (0.140) | 8/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3547887 = | NA (NA) | 16 (0.110) | 10/164 | NT | NA | noncoding (1/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3547917 = | NA (NA) | noncoding (31/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3555802 | NA (NA) | 19 (0.130) | 10/162 | NT | NA | noncoding (7/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3555812 | NA (NA) | noncoding (17/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3620116 | NA (NA) | 16 (0.110) | 6/166 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620152 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 19 (0.130) | 7/166 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 44 (0.300) | 10/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620614 | NA (NA) | 26 (0.180) | 12/166 | NT | 100% | coding (1423/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620635 | 0 (0.000) | coding (1444/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3622174 | NA (NA) | 14 (0.090) | 6/168 | NT | 100% | coding (2983/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3622205 | 0 (0.000) | coding (3014/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3625629 = | NA (NA) | 20 (0.140) | 13/166 | NT | 15.5% | noncoding (41/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3625675 = | 109 (0.740) | intergenic (+161/+4) | yhhI/yhhJ | putative transposase/putative ABC transporter permease | |||||
| * | ? | NC_000913 | = 3632763 | 127 (0.810) | 21 (0.150) | 13/154 | NT | 15.1% | intergenic (‑173/+89) | yhiJ/yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein |
| ? | NC_000913 | = 3632776 | 126 (0.930) | intergenic (‑186/+76) | yhiJ/yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein | |||||
| * | ? | NC_000913 | = 3635921 | 133 (0.850) | 23 (0.170) | 12/154 | NT | 16.0% | intergenic (+28/+287) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | = 3635933 | 126 (0.930) | intergenic (+40/+275) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 11 (0.080) | 6/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3765531 = | NA (NA) | 25 (0.170) | 6/168 | NT | 100% | coding (3349/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765547 = | 0 (0.000) | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3781698 = | NA (NA) | 15 (0.100) | 8/164 | NT | NA | noncoding (1/29 nt) | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3781727 = | NA (NA) | intergenic (+39/+14) | trmL/cysE | tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent/serine acetyltransferase | |||||
| * | ? | NC_000913 | = 3827429 | NA (NA) | 16 (0.110) | 8/164 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | NC_000913 | = 3827451 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| * | ? | NC_000913 | = 3857685 | 91 (0.580) | 18 (0.130) | 8/162 | NT | 16.1% | coding (720/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3857715 | 105 (0.740) | coding (690/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | = 3877683 | NA (NA) | 37 (0.260) | 8/164 | NT | NA | noncoding (98/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4137861 | NA (NA) | noncoding (73/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3898629 = | NA (NA) | 20 (0.140) | 11/162 | NT | NA | intergenic (+20/+42) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
| ? | NC_000913 | 3898659 = | NA (NA) | intergenic (+50/+12) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase | |||||
| * | ? | NC_000913 | = 3898636 | NA (NA) | 12 (0.080) | 8/162 | NT | NA | noncoding (6/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3898650 | NA (NA) | noncoding (20/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3943666 | NA (NA) | 28 (0.190) | 8/170 | NT | NA | intergenic (+156/‑38) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943696 | NA (NA) | intergenic (+186/‑8) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 3946688 | 163 (1.040) | 125 (0.850) | 17/166 | NT | 45.1% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4040481 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3946822 | NA (NA) | 39 (0.250) | 11/174 | NT | 18.9% | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040683 | 171 (1.090) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 3984294 | NA (NA) | 9 (0.060) | 8/170 | NT | NA | noncoding (75/104 nt) | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3984320 | NA (NA) | noncoding (101/104 nt) | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4035360 | NA (NA) | 33 (0.230) | 8/166 | NT | 100% | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035384 | 0 (0.000) | intergenic (+231/‑147) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4058302 | 126 (0.800) | 22 (0.160) | 13/160 | NT | 15.2% | intergenic (‑268/‑105) | glnA/typA | glutamine synthetase/GTP‑binding protein |
| ? | NC_000913 | = 4058333 | 132 (0.940) | intergenic (‑299/‑74) | glnA/typA | glutamine synthetase/GTP‑binding protein | |||||
| * | ? | NC_000913 | 4148370 = | 198 (1.260) | 33 (0.230) | 10/164 | NT | 15.3% | intergenic (‑53/+162) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| ? | NC_000913 | 4148393 = | NA (NA) | intergenic (‑76/+139) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | = 4148478 | NA (NA) | 21 (0.150) | 13/164 | NT | NA | noncoding (49/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4148511 | NA (NA) | noncoding (82/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4150413 | 146 (0.930) | 24 (0.170) | 15/160 | NT | 15.4% | intergenic (‑148/+34) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| ? | NC_000913 | = 4150423 | 132 (0.940) | intergenic (‑158/+24) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase | |||||
| * | ? | NC_000913 | 4168332 = | 30 (0.190) | 45 (0.290) | 10/174 | NT | 60.6% | intergenic (+132/‑40) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4209776 = | NA (NA) | noncoding (3/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4168341 | 16 (0.100) | 14 (0.100) | 10/158 | NT | 49.7% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4209894 = | NA (NA) | 8 (0.060) | 5/156 | NT | 100% | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | 4209912 = | 0 (0.000) | intergenic (+63/‑131) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4229380 = | NA (NA) | 13 (0.090) | 7/164 | NT | NA | noncoding (5/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4229413 = | NA (NA) | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4235376 = | NA (NA) | 16 (0.120) | 9/156 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
| ? | NC_000913 | 4235411 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | = 4240156 | NA (NA) | 16 (0.110) | 8/164 | NT | NA | intergenic (‑101/‑169) | yjbT/psiE | putative periplasmic protein/phosphate starvation inducible protein |
| ? | NC_000913 | = 4240189 | NA (NA) | noncoding (33/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 4285342 | NA (NA) | 20 (0.140) | 8/164 | NT | NA | noncoding (41/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4285374 | NA (NA) | noncoding (73/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4306837 | 120 (0.760) | 20 (0.150) | 10/156 | NT | 15.2% | intergenic (‑240/+33) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| ? | NC_000913 | = 4306852 | 119 (0.870) | intergenic (‑255/+18) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 55 (0.380) | 13/164 | NT | NA | noncoding (5/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 4325838 = | NA (NA) | noncoding (37/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4326250 | NA (NA) | 12 (0.080) | 5/164 | NT | NA | noncoding (449/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4326350 | NA (NA) | 25 (0.170) | 7/164 | NT | NA | noncoding (549/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4332016 | NA (NA) | 10 (0.070) | 7/160 | NT | NA | noncoding (3/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4332045 | NA (NA) | noncoding (32/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 4344813 = | NA (NA) | 19 (0.130) | 13/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4344821 | 120 (0.760) | 24 (0.170) | 10/160 | NT | 18.3% | noncoding (7/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4344832 | 107 (0.760) | noncoding (18/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4415961 | NA (NA) | 15 (0.100) | 7/166 | NT | NA | noncoding (4/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4415991 | NA (NA) | noncoding (34/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 17 (0.120) | 8/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | 4460417 = | NA (NA) | 22 (0.150) | 11/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4484333 = | NA (NA) | 8 (0.060) | 5/164 | NT | NA | noncoding (1/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4484365 = | NA (NA) | noncoding (33/84 nt) | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||