Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F210 I0 R1
|
188 |
159.1 |
7866933 |
93.3% |
7339848 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,194,516 |
A→G |
100% |
K551K (AAA→AAG) |
yqiK → |
PHB family membrane protein, function unknown |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,194,516 | 0 | A | G | 99.5%
| 595.0
/ ‑5.2
| 176 | K551K (AAA→AAG) | yqiK | PHB family membrane protein, function unknown |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (100/75); total (101/75) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.98e-01 |
Only 100 of 181 total aligned reads displayed.
CGCTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAGGTTGT > NC_000913/3194419‑3194612
|
cGCTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCGCAACAACTCCCGTCGAAGAAAAGGc < 1:71106/100‑1 (MQ=255)
acTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGAGACATTGACTTCACCCTTAAACTCAACAACTACCGTCGAAGAAAAGGCa > 2:1566119/2‑100 (MQ=255)
cTGATTGACTCCTTGCTCAATGAAATTGGCGTTTTAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGTAGACAAGGCag < 2:2055676/100‑1 (MQ=255)
cTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCag > 1:1438573/1‑100 (MQ=255)
cTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCag < 2:3222302/100‑1 (MQ=255)
gACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTaaa > 1:3397405/1‑100 (MQ=255)
gACTCCTTGCTCAATGAAATTGGCGTTTCAGGCCGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTaaa > 2:2576405/1‑100 (MQ=255)
cTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCAGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAAcc < 2:2754255/100‑1 (MQ=255)
tCCTTGCTCAATGGAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAAccc > 2:2411991/1‑100 (MQ=255)
ccTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAAcc > 2:1239228/1‑98 (MQ=255)
ccTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCct < 2:1518308/100‑1 (MQ=255)
ccTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCct > 2:1242296/1‑100 (MQ=255)
gCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTc < 1:3404593/100‑1 (MQ=255)
cTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTcc > 1:329307/1‑100 (MQ=255)
cTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTcc > 1:819527/1‑100 (MQ=255)
cTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTcc > 2:2442726/1‑100 (MQ=255)
tCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCAGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCa > 1:428353/1‑100 (MQ=255)
cAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAg > 2:839954/1‑100 (MQ=255)
cAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAg > 1:2727222/1‑100 (MQ=255)
aaTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACATCTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAgg < 1:3860595/100‑1 (MQ=255)
aaTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACACCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAgg > 1:1152904/1‑100 (MQ=255)
aaTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACACCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAgg < 1:3160780/100‑1 (MQ=255)
aTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGa > 1:2698589/1‑100 (MQ=255)
tGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaa < 2:2175688/100‑1 (MQ=255)
gAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaat < 1:2592588/100‑1 (MQ=255)
gAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaan < 1:3819279/100‑2 (MQ=255)
aaaTTGGCGTTTCAGGCGGCTCACTGGCGGCATTGTCTTCACTCTTAACCTCAACAACGCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaata < 1:1001944/100‑1 (MQ=255)
aaaTTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaata < 2:519654/100‑1 (MQ=255)
ttGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGaataatn < 2:2019157/100‑2 (MQ=255)
gCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATccc < 1:1330682/99‑1 (MQ=255)
gCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCt > 1:2869309/1‑100 (MQ=255)
cGTTTCAGGCGGCTCACTGGCTGCATTGACTTCACCCTTAACCTCAACAACTCCCGACGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTg < 1:3556288/100‑1 (MQ=255)
cGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTg < 1:2736446/100‑1 (MQ=255)
cGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTg > 2:915925/1‑100 (MQ=255)
cGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTg > 2:3150472/1‑100 (MQ=255)
gTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTgg > 2:749509/1‑100 (MQ=255)
gTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTgg > 1:2096923/1‑100 (MQ=255)
gTTTCAGGCGGCTCACGGGCGGCATTGACTTAACCCTTAACCTCATCAACTCCCGTCTAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTgg < 2:391678/100‑1 (MQ=255)
tttCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGc < 2:47298/100‑1 (MQ=255)
tCAGGCGGCTCACTGGCGGCATTGACTTCATCCTTATCCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGccc < 1:774985/100‑1 (MQ=255)
cAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCa > 2:3897144/1‑100 (MQ=255)
cAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCa > 1:1550177/1‑100 (MQ=255)
cAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCa > 1:40377/1‑100 (MQ=255)
cAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCa > 1:597009/1‑100 (MQ=255)
cAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCa > 1:636289/1‑100 (MQ=255)
aGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCaa > 1:951683/1‑100 (MQ=255)
ggcggcTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCaaa > 2:144388/1‑100 (MQ=255)
ggcTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAg > 1:2259041/1‑100 (MQ=255)
cTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGcc > 1:393492/1‑100 (MQ=255)
cACTGGCGGCATTGACTTCACCCTTAACCTCAACAGCTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGTAATAATCCCTGGCCCAAAAAGCCgg < 2:368540/100‑1 (MQ=255)
aCTGGCGGCATTGACTTCACCCTTAACCTCATCATCTCCCTTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCggg < 1:2145093/100‑1 (MQ=255)
aCTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCggg < 1:1937974/100‑1 (MQ=255)
aCTGGCGGCATTGACTTCACCCTTAACCTAAACAACTCGCGTCGAAGAAAAGGCAGATTAAAACCTCTTCCAGAAATAATACCTAGCACAAAAAgac > 2:3848916/1‑95 (MQ=255)
ggcggcATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGa > 1:1921887/1‑99 (MQ=255)
ggcggcATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAt > 1:3283135/1‑100 (MQ=255)
gcggcATTGACTTCACCCTTAACCTCAACAACTCCCGTCGCAGAAAAGGCAGAGTAAACCCTCTTCAAGTAATAATCCCTGGCCCaaaaataagaaga > 1:1674257/1‑90 (MQ=255)
gcggcATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtt > 1:3910945/1‑100 (MQ=255)
tccgatcTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttttt < 2:647825/94‑1 (MQ=255)
cATTGACTTCACCCTTAACCTCAACAACTCCCGTCTAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttttt < 2:816343/100‑1 (MQ=255)
cATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttttt < 2:2709730/100‑1 (MQ=255)
aTTGACTTCACCCTTAACCTCAACATCTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttttt < 1:2889748/99‑1 (MQ=255)
aTTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttt > 1:1784803/1‑97 (MQ=255)
aTTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTta > 2:635002/1‑100 (MQ=255)
tGACTTCACCCTGAACCTCAACAACTCCCGTCGAAGAAAAGGCATAGTAAACCGTCTTCCAGGAATAATCGCTTGCCCATAAAGCCGGGGATTTTTtata < 2:367226/100‑1 (MQ=255)
gACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTatat > 1:164272/1‑100 (MQ=255)
gACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTatat > 2:3495849/1‑100 (MQ=255)
gACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTatat > 2:2393617/1‑100 (MQ=255)
tCACCCTTAACCTCAACAACTCCAGTAGAAGAAAAGGCAGGGTAAACCCTCTTCCAGGAATAATACCTCGCCCAATAAGCCGGGGTTTTTTTATATCTga < 2:1297670/100‑2 (MQ=255)
cACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCg < 1:1003951/100‑1 (MQ=255)
cACCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCg < 2:2458491/100‑1 (MQ=255)
aCCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCg < 1:3352168/99‑1 (MQ=255)
aCCCTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGt > 1:2448569/1‑100 (MQ=255)
cccTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGtt > 1:3686845/1‑100 (MQ=255)
cccTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTAATATCTGCGtt > 1:1243227/1‑100 (MQ=255)
cTTAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTcc > 1:3233335/1‑100 (MQ=255)
tAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGc < 2:2850186/100‑1 (MQ=255)
tAACCTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGc < 1:3632888/100‑1 (MQ=255)
ccTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTaa > 1:3717393/1‑100 (MQ=255)
ccTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTAGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGATaa > 1:3327159/1‑100 (MQ=255)
ccTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCACTGGCACAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTaa > 1:1040943/1‑100 (MQ=255)
cTCAACAACTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCATGGCCCAAAAAGCCGGGGGATTTTTATATCTGCGTTCCGCTaaa > 2:1398938/1‑100 (MQ=37)
tCAACAAGTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTaaaa > 1:2046467/1‑100 (MQ=255)
caacaaCTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTaaaaa > 1:3772659/1‑100 (MQ=255)
acaacTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAACAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGt > 2:2120664/1‑100 (MQ=255)
caacTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTg > 2:1120485/1‑100 (MQ=255)
caacCCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGTAATAATCCCTGGCCTAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTaaaaa < 2:1022552/97‑1 (MQ=25)
aacTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGc < 2:2316046/100‑1 (MQ=255)
aacTCCCATCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGAGTTCAAATAAAAAGTGc < 2:3359586/100‑1 (MQ=25)
acTCCCGTCGAAGAAAAGGCAGAGTAAACCCGCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATTTCTGCGTTCCGCTAAAAAGTGCa < 2:399069/100‑1 (MQ=255)
cTCCCGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCaa < 2:1935529/100‑1 (MQ=255)
cccGTCGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAAt > 2:2871323/1‑100 (MQ=255)
cGAAGAAAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCa > 1:1798688/1‑100 (MQ=255)
gaagaaAAGGCCGAGTAAACCCTCTTCCAGGAATAATCCCTAGCCCAAAAAGCCGGTGATTTTTTGGATTTTCGATCCGCTAGTAGGTGCAGATGATCa > 2:320277/1‑99 (MQ=16)
gaagaaAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGAt > 2:3578420/1‑97 (MQ=255)
gaagaaAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAg < 2:126945/100‑1 (MQ=255)
gaagaaAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAg > 2:3070980/1‑100 (MQ=255)
aagaaAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAgg > 2:3289550/1‑100 (MQ=255)
aagaaAAGGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCACTAAAAAGTGCAAATGATCAgg < 2:3560000/100‑1 (MQ=255)
aaaagGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAACAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAGgttg < 2:3327548/100‑1 (MQ=255)
aaaagGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAGgttg < 2:3139898/100‑1 (MQ=255)
|
CGCTGATTGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTAAAAAGTGCAAATGATCAGGTTGT > NC_000913/3194419‑3194612
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
