breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 107,553 (T)9→8 100% intergenic (+79/‑152) lpxC → / → secM UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation
RA 111,013 G→A 15.8% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 234,308 T→C 22.1% T159A (ACA→GCA)  gloB ← hydroxyacylglutathione hydrolase
RA 252,589 G→C 15.3% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 285,202 T→A 15.2% intergenic (+34/‑193) yagF → / → yagG CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter
RA 285,204 C→T 16.2% intergenic (+36/‑191) yagF → / → yagG CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter
RA 292,302 C→G 16.2% intergenic (+71/+20) yagJ → / ← yagK CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
RA 308,054 (C)7→6 100% coding (1279/2526 nt) ecpC ← ECP production outer membrane protein
RA 317,566 G→A 16.0% pseudogene (128/129 nt) ykgQ → pseudogene, putative dehydrogenase
RA 380,022 (G)10→9 100% intergenic (‑141/+47) frmR ← / ← yaiO regulator protein that represses frmRAB operon/outer membrane protein
RA 410,479 A→G 100% S112S (TCA→TCG)  mak → manno(fructo)kinase
RA 433,246 A→G 25.5% D82G (GAT→GGT)  nrdR → Nrd regulon repressor
RA 454,856 G→A 15.6% intergenic (+67/‑277) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 459,110 G→A 21.6% A75T (GCC→ACC)  lon → DNA‑binding ATP‑dependent protease La
RA 459,833 G→A 16.5% A316T (GCG→ACG)  lon → DNA‑binding ATP‑dependent protease La
RA 460,789 G→A 24.5% M634I (ATG→ATA)  lon → DNA‑binding ATP‑dependent protease La
RA 464,354 C→A 16.4% intergenic (+46/‑48) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,356 A→T 15.2% intergenic (+48/‑46) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 674,567 C→T 19.8% V73I (GTC→ATC)  leuS ← leucyl‑tRNA synthetase
RA 681,694 A→G 15.2% intergenic (+31/+29) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,705 C→T 16.5% intergenic (+42/+18) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 721,011 T→A 15.0% intergenic (+171/+45) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 732,503 G→A 17.2% R974Q (CGG→CAG)  rhsC → Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 732,506 T→C 17.4% L975P (CTG→CCG)  rhsC → Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 805,312 G→T 15.8% E604* (GAG→TAG) ‡ ybhJ → aconitase family protein
RA 805,313 A→C 17.0% E604A (GAG→GCG) ‡ ybhJ → aconitase family protein
RA 860,151 A→G 16.3% intergenic (‑123/+23) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,154 A→T 17.1% intergenic (‑126/+20) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,157 C→T 17.4% intergenic (‑129/+17) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 953,802 A→G 100% V222A (GTA→GCA)  focA ← formate channel
RA 1,143,641 G→A 100% H243Y (CAT→TAT)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,177,646 T→G 15.2% N109K (AAT→AAG)  lolE → lipoprotein‑releasing system transmembrane protein
RA 1,177,647 C→A 16.5% L110I (CTT→ATT)  lolE → lipoprotein‑releasing system transmembrane protein
RA 1,226,832 T→G 19.0% F78C (TTT→TGT)  ycgJ → uncharacterized protein
RA 1,246,073 C→T 100% G435D (GGC→GAC)  treA ← periplasmic trehalase
RA 1,285,190 T→A 15.6% L18I (TTA→ATA)  narJ → molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
RA 1,285,193 T→A 15.6% W19R (TGG→AGG)  narJ → molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
RA 1,441,833 G→C 16.4% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,835 A→T 16.3% intergenic (‑92/+19) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,837 G→C 15.7% intergenic (‑94/+17) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,446,357:1 +T 15.5% intergenic (+151/+21) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,446,362 Δ1 bp 15.7% intergenic (+156/+16) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,449,050 T→A 20.4% intergenic (+32/+26) feaB → / ← tynA phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA 1,489,197 C→T 100% D322D (GAC→GAT)  aldA → aldehyde dehydrogenase A, NAD‑linked
RA 1,498,896 A→T 15.1% intergenic (+21/‑42) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,597,272 T→A 18.9% pseudogene (716/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,609,555 Δ1 bp 15.5% coding (1126/1452 nt) uxaB ← altronate oxidoreductase, NAD‑dependent
RA 1,620,224 C→G 16.9% intergenic (+17/+14) marB → / ← eamA periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA 1,620,227 C→G 18.1% intergenic (+20/+11) marB → / ← eamA periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA 1,666,466 T→G 16.6% Y384* (TAT→TAG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,468 A→T 15.5% Q385L (CAG→CTG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,470 C→A 17.2% L386I (CTA→ATA)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,674,955 A→T 15.8% intergenic (+8/+17) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA 1,674,958 A→T 15.9% intergenic (+11/+14) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA 1,755,639 G→A 100% intergenic (‑498/‑59) ydhZ ← / → pykF uncharacterized protein/pyruvate kinase I
RA 1,795,227 A→T 15.1% intergenic (‑75/+26) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,228 G→C 15.1% intergenic (‑76/+25) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,229 A→T 16.0% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,803,104 A→G 100% pseudogene (11/426 nt) arpB → pseudogene, ankyrin repeats
RA 1,810,062 T→C 15.1% intergenic (+14/‑149) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,824,549 C→T 18.5% G130D (GGC→GAC)  ves ← cold‑ and stress‑inducible protein
RA 1,835,622 G→A 100% R36R (CGG→CGA)  ynjA → carboxymuconolactone decarboxylase family protein
RA 1,865,682 G→C 17.3% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,868,250 A→G 100% Y448C (TAC→TGC)  yeaG → protein kinase, endogenous substrate unidentified; autokinase
RA 1,868,859 Δ1 bp 16.0% intergenic (+17/‑96) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,868,865:1 +G 15.9% intergenic (+23/‑90) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,883,027 C→G 15.0% intergenic (+30/‑161) dmlA → / → yeaV D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter
RA 1,950,296:1 +C 16.1% coding (227/1773 nt) aspS ← aspartyl‑tRNA synthetase
RA 1,950,302 Δ1 bp 17.7% coding (221/1773 nt) aspS ← aspartyl‑tRNA synthetase
RA 1,950,306 C→G 17.4% G73R (GGC→CGC)  aspS ← aspartyl‑tRNA synthetase
MC JC 1,978,503 Δ776 bp 100% insB1–insA insB1, insA
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein
RA 2,018,260 (A)8→7 100% coding (315/444 nt) fliJ → flagellar protein
RA 2,089,854 A→T 21.2% intergenic (‑141/‑142) yefM ← / → hisL antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
RA 2,140,400 G→A 16.9% R405W (CGG→TGG)  asmA ← suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
RA 2,140,401 T→C 16.0% P404P (CCA→CCG)  asmA ← suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,332 C→T 15.3% intergenic (‑128/+180) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,255,991 A→T 19.6% K213* (AAA→TAA) ‡ yeiL → putative transcriptional regulator
RA 2,255,992 A→T 20.2% K213I (AAA→ATA) ‡ yeiL → putative transcriptional regulator
RA 2,286,145 A→T 15.6% intergenic (+9/‑66) yejM → / → proL essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA 2,323,291 T→A 15.6% intergenic (+40/‑156) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,337,708 A→G 100% R571R (CGT→CGC)  gyrA ← DNA gyrase (type II topoisomerase), subunit A
RA 2,380,380 T→C 26.6% E88E (GAA→GAG)  menF ← isochorismate synthase 2
RA 2,391,414 C→G 18.3% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 17.9% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,414,689 C→G 15.3% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,470,410 (T)7→6 100% coding (1280/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
RA 2,472,522 C→T 57.1% A120A (GCG→GCA)  yfdN ← CPS‑53 (KpLE1) prophage; uncharacterized protein
RA 2,516,689 T→C 100% T382A (ACG→GCG)  yfeA ← putative diguanylate cyclase
RA 2,519,222 T→G 15.2% intergenic (+17/+35) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,519,228 C→A 15.3% intergenic (+23/+29) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,589,122 G→A 15.3% G510S (GGC→AGC)  acrD → aminoglycoside/multidrug efflux system
RA 2,589,125 T→C 16.6% F511L (TTT→CTT)  acrD → aminoglycoside/multidrug efflux system
RA 2,596,874 Δ1 bp 16.7% intergenic (‑137/+31) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,596,879:1 +G 15.4% intergenic (‑142/+26) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,645,886 (C)5→4 100% coding (1440/2313 nt) pbpC ← penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein
RA 2,652,855:1 (G)6→7 100% coding (362/846 nt) sseA → 3‑mercaptopyruvate sulfurtransferase
RA 2,654,144 T→A 15.5% intergenic (+805/+13) sseA → / ← sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
RA 2,707,320 A→T 17.1% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 16.7% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,731,312 G→A 100% intergenic (‑155/+288) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,765,794:1 (C)7→8 100% intergenic (‑18/‑124) yfjM ← / → rnlA CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; RNase LS
RA 2,767,507:1 (C)7→8 100% intergenic (+152/‑203) rnlB → / → yfjP CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
RA 2,809,774:1 (T)7→8 100% coding (158/738 nt) ygaZ → putative L‑valine exporter, norvaline resistance protein
RA 2,863,777 C→G 15.5% S62C (TCC→TGC)  ygbL → putative class II aldolase
RA 2,866,592:1 +C 100% coding (960/993 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 2,889,702 A→G 21.0% V133A (GTG→GCG)  cysI ← sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding
RA 2,890,521 G→A 30.4% P460S (CCA→TCA)  cysJ ← sulfite reductase, alpha subunit, flavoprotein
RA 2,891,179 G→C 19.2% S240R (AGC→AGG)  cysJ ← sulfite reductase, alpha subunit, flavoprotein
RA 2,907,998 A→T 15.5% intergenic (‑57/+31) eno ← / ← pyrG enolase/CTP synthetase
RA 2,912,426 A→G 21.1% F409S (TTT→TCT)  relA ← (p)ppGpp synthetase I/GTP pyrophosphokinase
RA 2,966,582 C→T 100% G618D (GGC→GAC)  ptsP ← PEP‑protein phosphotransferase enzyme I; GAF domain containing protein
RA 2,971,151 T→C 15.9% intergenic (+18/‑120) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,154 G→A 15.7% intergenic (+21/‑117) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,159 G→A 16.0% intergenic (+26/‑112) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 3,008,075 A→G 100% D189G (GAC→GGC)  ygeX → 2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,093,283 G→A 16.2% G116D (GGC→GAC)  yqgE → uncharacterized protein
RA 3,156,590 C→A 16.9% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 16.5% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,171,852 C→T 16.5% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 16.0% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 16.1% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 16.2% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,181,294 G→C 15.7% D292H (GAT→CAT)  ygiC → ATP‑Grasp family ATPase
RA 3,194,516 A→G 100% K551K (AAA→AAG)  yqiK → PHB family membrane protein, function unknown
RA 3,249,316 G→A 53.7% K116K (AAG→AAA)  yqjC → DUF1090 family putative periplasmic protein
RA 3,304,813 (C)7→6 100% coding (1005/1245 nt) mtr ← tryptophan transporter of high affinity
RA 3,333,582:1 (A)8→9 100% intergenic (‑131/‑128) rplU ← / → ispB 50S ribosomal subunit protein L21/octaprenyl diphosphate synthase
RA 3,352,673 T→C 100% E118G (GAA→GGA)  arcB ← aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
RA 3,379,266:1 (C)7→8 100% coding (732/1128 nt) zapE ← divisome ATPase
RA 3,411,299 T→C 100% V10A (GTA→GCA)  fis → global DNA‑binding transcriptional dual regulator
RA 3,436,256 G→A 100% A350A (GCG→GCA)  rsmB → 16S rRNA m(5)C967 methyltransferase, SAM‑dependent
RA 3,459,293:1 (G)5→6 100% coding (955/1482 nt) gspE → general secretory pathway component, cryptic
RA 3,525,798 A→G 24.2% S118P (TCT→CCT)  nudE ← adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
MC JC 3,582,206 Δ1,222 bp 100% IS1‑mediated [yhhZ]–yrhA [yhhZ], yrhA
RA 3,639,879 (T)8→7 100% intergenic (‑159/‑232) uspB ← / → uspA universal stress (ethanol tolerance) protein B/universal stress global response regulator
RA 3,648,144 (T)7→6 100% intergenic (‑356/‑384) dinQ ← / → arsR UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor
RA 3,657,599 T→A 16.6% intergenic (+32/‑767) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,657,603 T→A 15.8% intergenic (+36/‑763) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,702,839 T→C 15.3% Q10Q (CAA→CAG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,705,970 G→A 21.9% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 22.4% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 30.1% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 30.7% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,048 G→T 24.8% intergenic (‑258/+50) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,790,300 A→T 16.9% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 16.1% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,807,026 A→G 100% G14G (GGT→GGC)  waaG ← UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I
JC 3,815,859 Δ82 bp 100% [rph]–[rph] [rph], [rph]
RA 3,822,869 G→A 18.2% R157H (CGC→CAC)  spoT → bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA 3,888,213 Δ1 bp 16.0% intergenic (+21/‑222) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,219 T→A 16.2% intergenic (+27/‑216) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,225:1 +A 15.3% intergenic (+33/‑210) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,904,858 G→A 24.1% T247I (ACA→ATA)  bglF ← fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component
RA 3,951,598:1 +T 100% pseudogene (57/663 nt) ilvG → pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted
RA 4,049,986 G→T 15.4% intergenic (+234/+147) polA → / ← yihA 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein
RA 4,051,259 G→T 18.3% intergenic (‑494/‑88) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,051,262 A→C 18.5% intergenic (‑497/‑85) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,057,443 G→A 100% L198L (CTG→TTG)  glnA ← glutamine synthetase
RA 4,060,261 G→T 15.7% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 16.5% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,280 (T)9→8 100% intergenic (+50/‑167) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,088,091 G→C 17.8% intergenic (+34/+16) yiiG → / ← frvR DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain
RA 4,121,887 (GC)5→4 100% coding (400‑401/531 nt) hslV ← peptidase component of the HslUV protease
RA 4,128,352 T→A 100% H15L (CAC→CTC)  metJ ← transcriptional repressor, S‑adenosylmethionine‑binding
RA 4,177,171 T→A 15.4% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,215,178 Δ1 bp 100% coding (899/930 nt) metA → homoserine O‑transsuccinylase
RA 4,296,060 C→T 100% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,312,074 C→T 16.0% intergenic (‑32/+27) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,080 G→C 17.1% intergenic (‑38/+21) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,083 G→C 17.1% intergenic (‑41/+18) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,089 A→G 17.1% intergenic (‑47/+12) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,337,024 G→A 100% S3L (TCG→TTG)  adiC ← arginine:agmatine antiporter
RA 4,397,557 G→T 100% G49V (GGT→GTT)  mutL → methyl‑directed mismatch repair protein
RA 4,410,053 (T)9→8 100% intergenic (+47/‑80) rlmB → / → yjfI 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA 4,470,958 G→T 15.3% intergenic (‑45/+28) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,472,434 G→A 17.1% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 16.1% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,020 A→T 15.2% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,494,883:1 (A)7→8 100% coding (261/564 nt) idnK → D‑gluconate kinase, thermosensitive
RA 4,520,500 Δ1 bp 16.6% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 17.5% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,533,536 A→G 100% A83A (GCT→GCC)  yjhQ ← GNAT family putative N‑acetyltransferase
RA 4,573,528 A→G 100% pseudogene (1115/1503 nt) yjiT → pseudogene
RA 4,638,193:1 (C)6→7 100% coding (16/1353 nt) creD → inner membrane protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423724–3424582 3424582 1–859 68 [67] [67] 72 [rrfD]–[rrlD] [rrfD], [rrlD]
* * ÷ NC_000913 3621169–3622313 3622496–3622407 95–1328 75 [67] [1] 83 rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4421109 (0.780)20 (0.150) 6/168 NT 17.3% coding (688/1287 nt) thrC L‑threonine synthase
?NC_000913 = 4450 89 (0.680)coding (717/1287 nt) thrC L‑threonine synthase
* ? NC_000913 5537 =NA (NA)15 (0.150)
+26 bp		 7/126 NT NA intergenic (+7/+146) yaaX/yaaA DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron
?NC_000913 832304 = NA (NA)noncoding (16/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 15586NA (NA)26 (0.200) 11/168 NT NA noncoding (200/1345 nt) IS186 repeat region
?NC_000913 = 15595 NA (NA)noncoding (209/1345 nt) IS186 repeat region
* ? NC_000913 = 16653NA (NA)17 (0.130) 8/164 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 50327 =NA (NA)10 (0.080) 5/164 NT NA noncoding (1/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 50360 = NA (NA)noncoding (34/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 59280 =130 (0.930)24 (0.210) 12/144 NT 20.1% intergenic (+1/+407) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
?NC_000913 59320 = 86 (0.760)intergenic (+41/+367) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
* ? NC_000913 72136 =NA (NA)26 (0.200) 12/164 NT NA noncoding (1/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 72169 = NA (NA)noncoding (34/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 72136 =NA (NA)11 (0.090) 5/164 NT NA noncoding (1/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 411111 = NA (NA)noncoding (34/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 224027NA (NA)9 (0.070) 5/166 NT NA noncoding (257/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224038 NA (NA)noncoding (268/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 224059 =NA (NA)73 (0.570) 16/164 NT NA noncoding (289/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224082 = NA (NA)noncoding (312/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 224065NA (NA)52 (0.400) 7/164 NT NA noncoding (295/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224074 NA (NA)noncoding (304/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 224380 =NA (NA)20 (0.150) 11/170 NT NA noncoding (610/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224400 = NA (NA)noncoding (630/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225078 =NA (NA)43 (0.330) 16/164 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225084NA (NA)41 (0.320) 10/164 NT NA noncoding (1314/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 225092 NA (NA)noncoding (1322/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225544NA (NA)17 (0.130) 9/170 NT NA noncoding (45/76 nt) alaV tRNA‑Ala
?NC_000913 = 225567 NA (NA)noncoding (68/76 nt) alaV tRNA‑Ala
* ? NC_000913 = 225755114 (0.820)28 (0.210) 10/170 NT 19.9% intergenic (+180/‑4) alaV/rrlH tRNA‑Ala/23S ribosomal RNA of rrnH operon
?NC_000913 2729217 = 117 (0.880)intergenic (‑33/+152) rrlG/gltW 23S ribosomal RNA of rrnG operon/tRNA‑Glu
* ? NC_000913 225889 =NA (NA)44 (0.340) 17/164 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 225915NA (NA)12 (0.090) 7/162 NT NA noncoding (157/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 225926 NA (NA)noncoding (168/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 225998NA (NA)27 (0.200) 14/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226704 =NA (NA)9 (0.070) 7/170 NT NA noncoding (946/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226730 = NA (NA)noncoding (972/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)36 (0.270) 14/168 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228016 =NA (NA)54 (0.420) 15/164 NT NA noncoding (2258/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228041 = NA (NA)noncoding (2283/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228022NA (NA)25 (0.190) 7/164 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228108NA (NA)52 (0.390) 15/170 NT NA noncoding (2350/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228124 NA (NA)noncoding (2366/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228219 =NA (NA)11 (0.080) 7/166 NT NA noncoding (2461/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228248 = NA (NA)noncoding (2490/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228224NA (NA)26 (0.200) 10/166 NT NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 2579070 (0.000)135 (1.060) 77/162 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
* ? NC_000913 274347 =NA (NA)35 (0.270) 13/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274384 =NA (NA)30 (0.220) 12/172 NT NA noncoding (766/1195 nt) IS5 repeat region
?NC_000913 274422 = NA (NA)noncoding (728/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)23 (0.180) 11/160 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 274695NA (NA)13 (0.100) 6/170 NT NA noncoding (455/1195 nt) IS5 repeat region
?NC_000913 = 274727 NA (NA)noncoding (423/1195 nt) IS5 repeat region
* ? NC_000913 = 279649NA (NA)13 (0.100) 7/172 NT NA noncoding (282/768 nt) IS1 repeat region
?NC_000913 = 279672 NA (NA)noncoding (259/768 nt) IS1 repeat region
* ? NC_000913 279805 =NA (NA)21 (0.160) 6/170 NT NA noncoding (126/768 nt) IS1 repeat region
?NC_000913 279825 = NA (NA)noncoding (106/768 nt) IS1 repeat region
* ? NC_000913 = 279841NA (NA)29 (0.220) 8/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region
* ? NC_000913 = 315572NA (NA)26 (0.210) 9/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 315642 =NA (NA)18 (0.140) 10/168 NT NA noncoding (414/1255 nt) IS3 repeat region
?NC_000913 315671 = NA (NA)noncoding (443/1255 nt) IS3 repeat region
* ? NC_000913 = 315646NA (NA)28 (0.210) 15/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region
* ? NC_000913 = 315852NA (NA)35 (0.260) 11/170 NT NA noncoding (624/1255 nt) IS3 repeat region
?NC_000913 = 315875 NA (NA)noncoding (647/1255 nt) IS3 repeat region
* ? NC_000913 = 316201NA (NA)23 (0.180) 9/160 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 343971 =85 (0.610)17 (0.140) 10/158 NT 17.3% intergenic (+38/‑205) yahK/yahL broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein
?NC_000913 344009 = 87 (0.700)intergenic (+76/‑167) yahK/yahL broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein
* ? NC_000913 349605 =NA (NA)12 (0.090) 6/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 349876120 (0.860)27 (0.210) 8/164 NT 19.6% noncoding (272/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349938 NA (NA)noncoding (334/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 361887 =NA (NA)13 (0.100) 8/164 NT NA noncoding (5/34 nt) REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 361917 = NA (NA)intergenic (‑57/+9) lacA/lacY thiogalactoside acetyltransferase/lactose permease
* ? NC_000913 381663 =NA (NA)26 (0.200) 8/164 NT NA noncoding (404/1331 nt) IS2 repeat region
?NC_000913 381703 = NA (NA)noncoding (444/1331 nt) IS2 repeat region
* ? NC_000913 = 381669NA (NA)45 (0.350) 12/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 381681 =NA (NA)6 (0.050) 4/160 NT NA noncoding (422/1331 nt) IS2 repeat region
?NC_000913 381753 = NA (NA)noncoding (494/1331 nt) IS2 repeat region
* ? NC_000913 = 381825NA (NA)15 (0.120) 8/164 NT NA noncoding (566/1331 nt) IS2 repeat region
?NC_000913 = 381833 NA (NA)noncoding (574/1331 nt) IS2 repeat region
* ? NC_000913 381832 =NA (NA)13 (0.100) 5/166 NT NA noncoding (573/1331 nt) IS2 repeat region
?NC_000913 381859 = NA (NA)noncoding (600/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)70 (0.540) 16/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 = 382242NA (NA)17 (0.130) 7/166 NT NA noncoding (983/1331 nt) IS2 repeat region
?NC_000913 = 382260 NA (NA)noncoding (1001/1331 nt) IS2 repeat region
* ? NC_000913 382282 =NA (NA)21 (0.160) 9/166 NT NA noncoding (1023/1331 nt) IS2 repeat region
?NC_000913 382313 = NA (NA)noncoding (1054/1331 nt) IS2 repeat region
* ? NC_000913 409056 =NA (NA)12 (0.090) 9/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
* ? NC_000913 526259 =NA (NA)14 (0.110) 7/168 NT 100% coding (2999/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 526275 = 0 (0.000)coding (3015/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 729981 =NA (NA)5 (0.040) 9/168 NT NA coding (399/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 730006 = NA (NA)coding (424/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 730045NA (NA)22 (0.170) 9/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 732929 =89 (0.640)14 (0.110) 5/168 NT 25.0% coding (3347/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3765552 = 0 (0.000)coding (3370/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
* ? NC_000913 758413 =NA (NA)13 (0.100) 9/164 NT NA noncoding (5/118 nt) RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 758445 = NA (NA)noncoding (37/118 nt) RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 = 762891NA (NA)5 (0.040) 5/164 NT NA noncoding (130/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 762924 NA (NA)noncoding (163/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 786696 =NA (NA)7 (0.050) 5/166 NT NA intergenic (+11/+147) aroG/gpmA 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1
?NC_000913 786726 = NA (NA)intergenic (+41/+117) aroG/gpmA 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1
* ? NC_000913 = 792267NA (NA)9 (0.070) 6/164 NT NA noncoding (4/34 nt) REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 792297 NA (NA)noncoding (34/34 nt) REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 805804 =NA (NA)14 (0.110) 6/164 NT NA noncoding (1/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 805836 = NA (NA)noncoding (33/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 80585991 (0.670)17 (0.130) 6/172 NT 15.7% noncoding (56/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 805981 NA (NA)noncoding (178/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 819757NA (NA)11 (0.080) 8/166 NT NA intergenic (+10/‑127) moaE/ybhL molybdopterin synthase, large subunit/putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein
?NC_000913 = 819784 NA (NA)noncoding (27/27 nt) REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 900799NA (NA)8 (0.060) 6/164 NT NA noncoding (51/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 900831 NA (NA)noncoding (83/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1062411 =NA (NA)9 (0.070) 7/166 NT NA noncoding (5/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 1062444 = NA (NA)noncoding (38/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 1190580 =NA (NA)17 (0.130) 10/166 NT NA noncoding (1/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1190603 = NA (NA)intergenic (‑156/+13) phoP/purB response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase
* ? NC_000913 = 120395079 (0.570)20 (0.160) 9/160 NT 20.5% coding (129/339 nt) ymfM e14 prophage; uncharacterized protein
?NC_000913 = 1203962 84 (0.670)coding (141/339 nt) ymfM e14 prophage; uncharacterized protein
* ? NC_000913 1207790 =25 (0.180)63 (0.550) 46/146 NT 71.8% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 29 (0.250)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780527 (0.190)51 (0.450) 37/146 NT 66.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 29 (0.250)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 1269275NA (NA)30 (0.240) 12/162 NT 23.9% coding (1/108 nt) ldrA toxic polypeptide, small
?NC_000913 = 1269313 105 (0.750)intergenic (‑38/+390) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 = 12994980 (0.000)111 (0.830) 80/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 133485472 (0.520)18 (0.140) 8/160 NT 20.5% intergenic (+25/‑270) cysB/ymiA N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein
?NC_000913 = 1334864 75 (0.600)intergenic (+35/‑260) cysB/ymiA N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein
* ? NC_000913 = 1357753NA (NA)13 (0.100) 9/160 NT NA intergenic (‑85/+49) ymjA/puuP DUF2543 family protein/putrescine importer
?NC_000913 = 1357792 NA (NA)noncoding (23/30 nt) REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1357754 =NA (NA)7 (0.060) 6/160 NT NA intergenic (‑86/+48) ymjA/puuP DUF2543 family protein/putrescine importer
?NC_000913 1357793 = NA (NA)noncoding (24/30 nt) REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 1468681NA (NA)53 (0.760)
+44 bp		 12/90 NT NA noncoding (560/1331 nt) IS2 repeat region
?NC_000913 1650843 = NA (NA)noncoding (1/706 nt) IS2 repeat region
* ? NC_000913 1508794 =NA (NA)7 (0.050) 4/166 NT NA noncoding (4/33 nt) REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1508825 = NA (NA)intergenic (+83/+9) ydcP/yncJ putative peptidase/uncharacterized protein
* ? NC_000913 1735983 =NA (NA)9 (0.070) 5/166 NT NA noncoding (1/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1736008 = NA (NA)noncoding (26/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1852545 =NA (NA)14 (0.110) 9/156 NT NA intergenic (+17/+76) pncA/ydjE nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein
?NC_000913 1852562 = NA (NA)noncoding (1/36 nt) REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 20668320 (0.000)27 (0.220) 12/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 2133432 =NA (NA)16 (0.120) 7/164 NT NA noncoding (1/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2133462 = NA (NA)noncoding (31/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2139701NA (NA)8 (0.060) 4/164 NT NA intergenic (+216/+58) yegH/asmA inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
?NC_000913 = 2139734 NA (NA)noncoding (33/37 nt) REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2146653NA (NA)12 (0.090) 5/164 NT NA noncoding (54/84 nt) REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2146683 NA (NA)noncoding (84/84 nt) REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2252796 =NA (NA)18 (0.140) 11/164 NT NA noncoding (1/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 2252829 = NA (NA)noncoding (34/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 2280409 =100 (0.720)17 (0.130) 9/164 NT 16.7% coding (75/696 nt) rsuA 16S rRNA pseudouridine(516) synthase
?NC_000913 2280436 = 78 (0.610)coding (48/696 nt) rsuA 16S rRNA pseudouridine(516) synthase
* ? NC_000913 = 2282890NA (NA)8 (0.060) 7/164 NT NA noncoding (4/34 nt) REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 2282920 NA (NA)noncoding (34/34 nt) REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2304696NA (NA)29 (0.230) 11/164 NT 28.8% noncoding (280/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2304728 78 (0.560)noncoding (312/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2422747 =113 (0.810)25 (0.190) 13/164 NT 18.9% coding (793/891 nt) yfcI transposase_31 family protein
?NC_000913 2422773 = 110 (0.860)coding (767/891 nt) yfcI transposase_31 family protein
* ? NC_000913 = 2499276101 (0.720)18 (0.140) 10/162 NT 16.3% coding (606/1698 nt) ypdA sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
?NC_000913 = 2499293 93 (0.730)coding (623/1698 nt) ypdA sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
* ? NC_000913 2539608 =NA (NA)12 (0.090) 7/166 NT NA noncoding (2/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2539638 = NA (NA)noncoding (32/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2539674NA (NA)18 (0.140) 10/164 NT NA intergenic (‑91/+43) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
?NC_000913 = 2539688 NA (NA)intergenic (‑105/+29) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
* ? NC_000913 2568139 =NA (NA)9 (0.070) 5/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2568169 = NA (NA)noncoding (31/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 2568139 =NA (NA)12 (0.090) 6/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 = 2593024NA (NA)9 (0.070) 6/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2662541NA (NA)16 (0.120) 6/164 NT NA noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662574 NA (NA)noncoding (266/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 2727847 =NA (NA)19 (0.140) 8/170 NT NA noncoding (1338/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727872 = NA (NA)noncoding (1313/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)65 (0.490) 15/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 = 2837464NA (NA)14 (0.110) 8/162 NT NA intergenic (‑39/+114) hypF/hydN carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
?NC_000913 = 2837491 NA (NA)noncoding (27/27 nt) REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2842483NA (NA)10 (0.080) 6/164 NT NA noncoding (61/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2842494 NA (NA)noncoding (72/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3060658NA (NA)14 (0.100) 8/174 NT NA intergenic (+12/‑192) argP/scpA transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor/methylmalonyl‑CoA mutase
?NC_000913 = 3060681 NA (NA)intergenic (+35/‑169) argP/scpA transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor/methylmalonyl‑CoA mutase
* ? NC_000913 = 3217490NA (NA)14 (0.110) 9/164 NT NA noncoding (57/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3217522 NA (NA)noncoding (89/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3252144NA (NA)11 (0.080) 7/166 NT NA noncoding (80/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3252155 NA (NA)noncoding (91/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 3255287NA (NA)15 (0.120) 8/166 NT NA noncoding (71/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3255319 NA (NA)noncoding (103/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3277814NA (NA)9 (0.070) 3/162 NT NA intergenic (+13/+42) yhaV/agaR toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system/transcriptional repressor of the aga regulon
?NC_000913 = 3277847 NA (NA)noncoding (29/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3296999 =NA (NA)16 (0.120) 6/164 NT NA noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3297032 = NA (NA)noncoding (34/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3313290NA (NA)12 (0.090) 6/164 NT NA noncoding (39/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3313328 NA (NA)noncoding (77/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3336878 =NA (NA)9 (0.070) 6/168 NT NA intergenic (‑75/+85) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
?NC_000913 3336905 = NA (NA)intergenic (‑102/+58) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
* ? NC_000913 = 3336922NA (NA)13 (0.100) 7/166 NT NA noncoding (4/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3336952 NA (NA)noncoding (34/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 3427251NA (NA)21 (0.160) 7/168 NT 38.9% noncoding (1512/1542 nt) rrsD 16S ribosomal RNA of rrnD operon
?NC_000913 4209670 = 35 (0.250)noncoding (1524/1542 nt) rrsE 16S ribosomal RNA of rrnE operon
* ? NC_000913 3470277 =NA (NA)26 (0.200) 15/164 NT NA coding (1053/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470311 = NA (NA)coding (1019/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 3470738 =NA (NA)10 (0.080) 4/168 NT NA coding (592/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470767 = NA (NA)coding (563/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 3546222 =NA (NA)12 (0.090) 10/166 NT NA noncoding (1/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3546254 = NA (NA)noncoding (33/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3547887 =NA (NA)11 (0.090) 7/164 NT NA noncoding (1/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3547917 = NA (NA)noncoding (31/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3619878 =NA (NA)17 (0.140) 8/160 NT 100% coding (687/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619892 = 0 (0.000)coding (701/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620119 =NA (NA)12 (0.090) 4/166 NT 100% coding (928/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620146 = 0 (0.000)coding (955/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620220NA (NA)20 (0.150) 7/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620569 =NA (NA)36 (0.280) 10/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3621366 =NA (NA)19 (0.150) 10/166 NT 100% coding (2175/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3621378 = 0 (0.000)coding (2187/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3621534NA (NA)5 (0.040) 4/162 NT 100% coding (2343/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621592 0 (0.000)coding (2401/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3622466 =NA (NA)27 (0.200) 7/170 NT 100% coding (3275/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622497 = 0 (0.000)coding (3306/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3650792NA (NA)12 (0.090) 7/166 NT NA noncoding (81/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3650805 NA (NA)noncoding (94/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 3674441NA (NA)11 (0.090) 6/164 NT NA noncoding (61/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3674473 NA (NA)noncoding (93/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3680409NA (NA)10 (0.080) 5/160 NT NA noncoding (43/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3680441 NA (NA)noncoding (75/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3898629 =NA (NA)14 (0.110) 12/162 NT NA intergenic (+20/+42) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
?NC_000913 3898659 = NA (NA)intergenic (+50/+12) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
* ? NC_000913 = 3898636NA (NA)10 (0.080) 6/162 NT NA noncoding (6/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3898650 NA (NA)noncoding (20/26 nt) REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 394152118 (0.130)14 (0.110) 6/168 NT 45.2% intergenic (‑194/‑287) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
?NC_000913 = 3941548 NA (NA)intergenic (‑221/‑260) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
* ? NC_000913 3943467 =NA (NA)36 (0.280) 12/166 NT 48.5% noncoding (33/76 nt) gltU tRNA‑Glu
?NC_000913 3943474 = 41 (0.290)noncoding (40/76 nt) gltU tRNA‑Glu
* ? NC_000913 = 3962703NA (NA)8 (0.060) 6/166 NT NA noncoding (4/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3962735 NA (NA)noncoding (36/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4040482 =NA (NA)51 (0.390) 10/166 NT NA intergenic (+59/‑35) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 = 4128030NA (NA)7 (0.050) 6/164 NT NA noncoding (79/97 nt) RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 4128041 NA (NA)noncoding (90/97 nt) RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4148478NA (NA)17 (0.130) 8/164 NT NA noncoding (49/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4148511 NA (NA)noncoding (82/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4150413127 (0.910)21 (0.170) 14/160 NT 15.4% intergenic (‑148/+34) eptC/ppc LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
?NC_000913 = 4150423 117 (0.930)intergenic (‑158/+24) eptC/ppc LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
* ? NC_000913 = 416834112 (0.090)16 (0.130) 11/158 NT 60.1% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 NA (NA)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 = 41716252 (0.010)76 (0.580) 13/166 NT 97.6% intergenic (+81/‑12) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
?NC_000913 = 4213004 NA (NA)intergenic (+58/‑36) rrlE/rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
* ? NC_000913 4235376 =NA (NA)9 (0.070) 5/156 NT NA coding (1619/1650 nt) pgi glucosephosphate isomerase
?NC_000913 4235411 = NA (NA)intergenic (+4/‑495) pgi/yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
* ? NC_000913 4240157 =NA (NA)10 (0.080) 3/164 NT NA noncoding (1/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4240190 = NA (NA)noncoding (34/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 4285342NA (NA)20 (0.160) 12/164 NT NA noncoding (41/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4285374 NA (NA)noncoding (73/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4295912 =NA (NA)9 (0.070) 6/164 NT NA noncoding (78/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 4295942 = NA (NA)noncoding (108/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4332016 =NA (NA)14 (0.110) 8/160 NT NA noncoding (3/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4332047 = NA (NA)intergenic (+43/‑69) proP/pmrR proline/glycine betaine transporter/putative membrane‑bound BasS regulator
* ? NC_000913 = 4386017NA (NA)14 (0.110) 11/164 NT NA coding (314/315 nt) yjeO inner membrane protein
?NC_000913 = 4386039 NA (NA)intergenic (+21/+8) yjeO/mscM inner membrane protein/mechanosensitive channel protein, miniconductance
* ? NC_000913 = 4415961NA (NA)18 (0.140) 11/166 NT NA noncoding (4/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4415991 NA (NA)noncoding (34/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4460417 =NA (NA)12 (0.090) 8/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4549786NA (NA)10 (0.080) 7/164 NT NA noncoding (4/36 nt) REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4549818 NA (NA)noncoding (36/36 nt) REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 4587878NA (NA)12 (0.090) 9/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences