Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F210 I0 R1 188 159.1 7866933 93.3% 7339848 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,051,259 G→T 18.3% intergenic (‑494/‑88) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,051,2590GT18.3% 448.0 / 85.1 185intergenic (‑494/‑88)yihA/yihIcell division GTP‑binding protein/activator of Der GTPase
Reads supporting (aligned to +/- strand):  ref base G (90/60);  new base T (23/11);  total (114/71)
Fisher's exact test for biased strand distribution p-value = 4.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.97e-01

Only 100 of 196 total aligned reads displayed.

CACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCA  >  NC_000913/4051160‑4051358
                                                                                                   |                                                                                                   
cacGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACagag                                                                                                     >  2:1106778/1‑100 (MQ=255)
cacGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACagag                                                                                                     >  2:16631/1‑100 (MQ=255)
 acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGt                                                                                                    <  1:2943797/100‑1 (MQ=255)
 acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGt                                                                                                    >  1:2388585/1‑100 (MQ=255)
 acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGt                                                                                                    >  2:2254944/1‑100 (MQ=255)
 acGGATTGTTCCCGCTAAAGGAAAAACAGGGTGTGTTGGCGGACTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACagag                                                                                                     <  2:770943/99‑1 (MQ=255)
  cGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTa                                                                                                   <  2:3336382/100‑1 (MQ=255)
    gATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGACGACAGAGTaa                                                                                                  >  1:2850754/1‑99 (MQ=255)
     aTTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATc                                                                                                <  1:3642098/100‑1 (MQ=255)
     aTTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATAAAAAAAAAAAAAAGGCGACAGAGTAATc                                                                                                <  2:3050661/100‑1 (MQ=255)
      ttGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCt                                                                                               <  2:49723/100‑1 (MQ=255)
       tGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTg                                                                                              <  1:3925080/100‑1 (MQ=255)
       tGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGAAAAAAAAACGACAGAGTAATCt                                                                                               >  1:787601/1‑99 (MQ=255)
         ttCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTc                                                                                            >  1:1420973/1‑100 (MQ=255)
          tCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCg                                                                                           <  2:1515273/100‑1 (MQ=255)
           ccGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGc                                                                                          >  2:2733059/1‑100 (MQ=255)
            cGGCTAAATGAAAAACAGGGCGTGTTTCCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGcc                                                                                         <  2:1607179/100‑1 (MQ=38)
            cGGCTAAAGGAAAAACAGGGTGTGTTGGTGGCTTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGcc                                                                                         <  1:330577/100‑1 (MQ=38)
            cGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGcc                                                                                         <  1:3255534/100‑1 (MQ=255)
            cGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGcc                                                                                         <  2:1523875/100‑1 (MQ=255)
             ggCTAAAGGAAAAATAGTGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGcc                                                                                         <  1:1965048/99‑1 (MQ=38)
             ggCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCt                                                                                        >  1:1283644/1‑100 (MQ=255)
             ggCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCt                                                                                        >  2:40884/1‑100 (MQ=255)
               cTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCttt                                                                                      <  1:551129/100‑1 (MQ=255)
                 aaaGGAAAAACAGGGTGTGTTGGCGGTCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCttttt                                                                                    <  1:2675881/100‑1 (MQ=255)
                 aaaGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCttttt                                                                                    >  1:3476353/1‑100 (MQ=255)
                  aaGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGCCtttttt                                                                                   <  1:2497702/100‑1 (MQ=255)
                   aGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTc                                                                                  >  2:1355830/1‑100 (MQ=255)
                    ggAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCt                                                                                 >  2:104602/1‑100 (MQ=255)
                    ggAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCt                                                                                 <  1:2241283/100‑1 (MQ=255)
                    ggAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAATCAGGAAAAAAAGCGACAGAGTAATCTGTCGCCTTTTTTCt                                                                                 >  1:324172/1‑100 (MQ=255)
                      aaaaaCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCttt                                                                               >  1:2414964/1‑100 (MQ=255)
                       aaaaCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttg                                                                              >  1:2181038/1‑100 (MQ=255)
                         aaCAGGGTTTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttg                                                                              <  2:1835435/98‑1 (MQ=255)
                         aaCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttgct                                                                            >  1:3367358/1‑100 (MQ=255)
                           cAGGGTTTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttgc                                                                             <  1:3693851/97‑1 (MQ=255)
                            aGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAAACGACAGAGTAATCTGTCGCCTTTTTTCTttgcttgc                                                                         >  1:1824754/1‑100 (MQ=255)
                             gggTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTtgcttgct                                                                        >  1:2248906/1‑100 (MQ=255)
                                tgtgtTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTc                                                                     <  2:1232200/100‑1 (MQ=255)
                                   gtTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGt                                                                  <  2:2105355/100‑1 (MQ=255)
                                     tGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTa                                                                <  1:949068/100‑1 (MQ=255)
                                     tGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTa                                                                <  2:1022605/100‑1 (MQ=255)
                                      ggcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTa                                                                >  2:833214/1‑99 (MQ=255)
                                      ggcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAg                                                               >  1:1685695/1‑100 (MQ=255)
                                      ggcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTACTTTGCTTGCTTTCTGTTAg                                                               <  2:2388563/100‑1 (MQ=255)
                                      ggcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGACGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAg                                                               >  1:1050992/1‑100 (MQ=255)
                                       gcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGACAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGa                                                              >  2:2166455/1‑100 (MQ=255)
                                        cggtCTGCAACGATTGGAAGACCCGTTAAGGGTTATGAGTCAGGAATAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTa                                                                <  2:2863761/97‑1 (MQ=39)
                                        cggcCTGCAAGGATTGTAAGACCCGTTAAGGTTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGAt                                                             <  1:1570665/100‑1 (MQ=255)
                                            cTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccg                                                         >  2:3005878/1‑100 (MQ=255)
                                             tGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgc                                                        <  2:1685680/100‑1 (MQ=255)
                                               cAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgccg                                                      >  1:3230827/1‑100 (MQ=255)
                                               cAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgcc                                                       >  1:2603843/1‑99 (MQ=255)
                                                aaGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgccg                                                      >  1:705110/1‑99 (MQ=255)
                                                  ggATTGTAAGACCCGTTAATGGTTATGAGTCAGGAAAAAAGGCGACAGCGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgcc                                                       >  2:2614920/1‑96 (MQ=255)
                                                  ggATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCaa                                                   <  1:2282534/100‑1 (MQ=255)
                                                  ggATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTACTTGCTTTCTGTTAGATTCCGCCGCaa                                                   >  1:2146878/1‑100 (MQ=255)
                                                     ttGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATc                                                <  1:1118484/100‑1 (MQ=255)
                                                      tGTAGGCCCCGTGAAGGCTTATGCGTCAGGTATAAAGGCGAGAGGGTATTCTGTCTCTTTTTTTCTTTGCTTGCTTTCTGTTATATTCCGCGGTAAATc                                                <  2:3617624/99‑1 (MQ=255)
                                                       gTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCta                                              >  2:2899788/1‑100 (MQ=255)
                                                        tAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCtat                                             >  1:2840653/1‑100 (MQ=255)
                                                        tAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCtat                                             >  1:1758068/1‑100 (MQ=255)
                                                         aaGACCCGTTAAGGGTTATGAGTCAGTAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCtata                                            <  2:3277528/100‑1 (MQ=255)
                                                          aGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATAc                                           <  2:589463/100‑1 (MQ=255)
                                                            aCCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTg                                         >  2:2973094/1‑100 (MQ=255)
                                                             cccGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGa                                        <  2:3230796/100‑1 (MQ=255)
                                                              ccGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGaa                                       <  2:3450847/100‑1 (MQ=255)
                                                                  tAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCAGCAAATCTATACTGAATaa                                    >  2:1073701/1‑99 (MQ=255)
                                                                    aGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAAc                                 <  2:331920/100‑1 (MQ=255)
                                                                    aGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAAc                                 >  2:2012560/1‑100 (MQ=255)
                                                                      ggTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACgg                               <  2:661670/100‑1 (MQ=255)
                                                                       gTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGc                              <  2:3100918/100‑1 (MQ=255)
                                                                       gTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTAAATAAAAc                                 >  2:3887317/1‑97 (MQ=255)
                                                                       gTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGATTTCTGTTAGATTCAGCAGAAAATCTATACTGAATAAAACGGc                              >  1:669914/1‑100 (MQ=39)
                                                                          aTGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTaa                           >  1:344246/1‑100 (MQ=255)
                                                                           tGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTaaa                          >  1:3190923/1‑100 (MQ=255)
                                                                                cAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACg                     <  1:2117471/100‑1 (MQ=255)
                                                                                   gAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAAc                  >  1:3597245/1‑100 (MQ=255)
                                                                                       aaaGGCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCACATCTATACTGAATAAAACGGCTACAAGACGAACCAtt              >  2:2584998/1‑100 (MQ=38)
                                                                                       aaaGGCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCAtt              >  2:803869/1‑100 (MQ=255)
                                                                                       aaaGGCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCAtt              >  2:2837905/1‑100 (MQ=255)
                                                                                        aaGGCGACAGAGTAATCTGTCGTTTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTa             <  1:585513/100‑1 (MQ=255)
                                                                                         aGGCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTAt            >  1:2914314/1‑100 (MQ=255)
                                                                                         aGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTAt            >  1:1937739/1‑100 (MQ=255)
                                                                                         aGGCGACAGAGTAATCTGACGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACTAACCATTa             >  2:466752/1‑99 (MQ=255)
                                                                                          ggCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGTCTAAAAGACGAActa                >  1:3309924/1‑93 (MQ=38)
                                                                                          ggCGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATg           >  1:3213536/1‑100 (MQ=255)
                                                                                          ggCGACAGATTACTCTGTCGACTTTTTTCTTTGCTTGATTTCTGTTAGATTCTGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTAt            >  2:3484441/1‑99 (MQ=38)
                                                                                          ggCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAGAGACGAACCATTATg           >  1:3869620/1‑100 (MQ=255)
                                                                                          ggCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATg           >  1:3795114/1‑100 (MQ=255)
                                                                                           gCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTAt            >  2:1623650/1‑98 (MQ=255)
                                                                                            cGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGaa         >  1:1986110/1‑100 (MQ=255)
                                                                                             gACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTACTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGaaa        <  2:3095073/100‑1 (MQ=255)
                                                                                               cAGAGTCATCTGTCGTCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGTTTAAAAGACGAAACATTATGAAAcc      <  2:3420627/100‑1 (MQ=255)
                                                                                               cAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAAcc      >  1:1371322/1‑100 (MQ=255)
                                                                                               cAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTAAATAAAACGGCTAAAAGACGAACCATTATGAAAcc      >  1:1909726/1‑100 (MQ=255)
                                                                                                agagTAATCTGTCACCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACca     >  1:2663917/1‑100 (MQ=255)
                                                                                                 gagTAATCTGTCGCCTTTTTTCTTTGCTTGTTTTCTGTTAGATTCCGCCGCAAATCTATCGTGAATAAAAAGGCTAAAAGATAAAACATTAAGAAACca     >  2:729409/1‑99 (MQ=255)
                                                                                                 gagTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACcat    >  2:3361381/1‑100 (MQ=255)
                                                                                                   gTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACcatca  <  2:3844258/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCA  >  NC_000913/4051160‑4051358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A