Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I0 R1
|
270 |
114.4 |
5840133 |
93.3% |
5448844 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,325,822 |
G→A |
45.3% |
intergenic (‑81/+577) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,325,822 | 0 | G | A | 45.3%
| 111.0
/ inf
| 302 | intergenic (‑81/+577) | yjdN/yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Reads supporting (aligned to +/- strand): ref base G (99/65); new base A (70/66); total (170/132) |
| Fisher's exact test for biased strand distribution p-value = 1.30e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 310 total aligned reads displayed.
GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGC > NC_000913/4325723‑4325921
|
ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAcgcgcg < 2:2293833/100‑1 (MQ=255)
ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAcgcgcg < 2:1132291/100‑1 (MQ=255)
aCTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCg < 2:223427/100‑1 (MQ=255)
ttAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCa > 2:56130/1‑100 (MQ=255)
tAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCAt > 1:2765195/1‑100 (MQ=255)
tAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCAt > 2:911947/1‑100 (MQ=255)
cgatctgatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAg < 1:1096179/95‑1 (MQ=255)
ggCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAgg > 2:1332904/1‑100 (MQ=255)
gCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATGCGACGCTCGCGCGTCTTATCAGGc < 1:745458/100‑1 (MQ=37)
gCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATGCGACGCTCGCGCGTCTTATCAGGc < 1:855292/100‑1 (MQ=25)
gatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTc > 2:2459262/1‑100 (MQ=255)
tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCTGCCTGATGCGACGCTCGCGCGTCTTATCAGGccgcctc < 2:137537/100‑7 (MQ=18)
tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCgg > 2:77895/1‑100 (MQ=255)
tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCgg < 2:2634666/100‑1 (MQ=255)
ccgatcttAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt < 2:1667171/94‑1 (MQ=255)
tCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTg > 2:1812364/1‑100 (MQ=255)
aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc < 1:173917/100‑1 (MQ=255)
aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc > 1:438623/1‑100 (MQ=255)
gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCg > 1:1029310/1‑100 (MQ=255)
aaGAGAAGCCAGTCAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGAAGTCGGCACTGTTGCCGGAt < 1:1780096/100‑1 (MQ=255)
nggcgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAATGGtgccgactg < 1:2188351‑M1/54‑5 (MQ=255)
ggcgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAGGCGTCGCATCAGGCAGTCGGCAGTGTTtccgggtg < 1:1011604‑M1/54‑4 (MQ=255)
ggcgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAATGgtgccgactgn > 2:2188364‑M1/46‑95 (MQ=255)
agcgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAATGgtgccgactgc > 2:2499258‑M1/46‑95 (MQ=255)
agaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcg > 2:2367313/1‑100 (MQ=255)
gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg < 1:8873/100‑1 (MQ=255)
cgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg > 1:2000643‑M1/44‑100 (MQ=255)
cgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg > 1:516112‑M1/44‑100 (MQ=255)
cgtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg > 2:2874631‑M1/44‑100 (MQ=255)
gtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggc > 1:2576122‑M1/43‑100 (MQ=255)
gtaaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg > 1:1438172‑M1/43‑99 (MQ=255)
gtaaacgccttatccggcctacggagggtgcggcaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc < 1:1923823‑M1/55‑1 (MQ=255)
aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggcg < 1:1239942/100‑1 (MQ=255)
gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt > 1:2418331/1‑100 (MQ=255)
gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt > 2:1997801/1‑100 (MQ=255)
aaacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGGCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt < 1:1670265‑M1/60‑1 (MQ=255)
aacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTa < 2:2137710‑M1/61‑1 (MQ=255)
aacgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTa > 1:2701657‑M1/40‑100 (MQ=255)
cAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTaa > 2:2714434/1‑100 (MQ=255)
cgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTaaa < 2:275597‑M1/63‑1 (MQ=255)
cgccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCACTCGGCACTGTTGCCGGATGCCGCGTaaa < 1:966581‑M1/63‑1 (MQ=255)
cgccttatccggcctacggagggtgcgggaatttgtaCGCCTGATAAGACGCGCAAGCGTCCCATCAGGCAGTCGGCACTGTGCCGGGATgcg < 1:1142810‑M1/56‑1 (MQ=255)
gTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 2:1014227/1‑100 (MQ=255)
gTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGCATccggcaacagt < 1:1506330/100‑7 (MQ=25)
ccttatccggcctacggagggtgcggtaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg > 1:2903764‑M1/36‑100 (MQ=255)
ccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg < 1:2795789‑M1/65‑1 (MQ=255)
ccttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg > 2:671815‑M1/36‑100 (MQ=255)
cttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc > 1:158168‑M1/35‑100 (MQ=255)
ttatccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGcc > 2:1272534‑M1/34‑100 (MQ=255)
atccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTGGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt < 1:1639709‑M1/69‑1 (MQ=255)
atccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt < 2:891018‑M1/69‑1 (MQ=255)
atccggcctacggagggtgcgggaatgtggaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt > 1:1314067‑M1/32‑100 (MQ=255)
tgtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTa > 1:2733543/1‑100 (MQ=255)
tccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTa < 2:710525‑M1/70‑1 (MQ=255)
ccggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt > 1:1282897‑M1/30‑100 (MQ=255)
cggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATc < 2:1727314‑M1/72‑1 (MQ=255)
cggcctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATc > 2:1447847‑M1/29‑100 (MQ=255)
gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:2337849/1‑100 (MQ=255)
ttCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGTCGGATGCGGCGTAAACGCCTTATCCgg < 1:2135426/100‑1 (MQ=255)
ttCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCGTATCCgg > 1:484859/1‑100 (MQ=255)
cctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 2:2078119‑M1/75‑1 (MQ=255)
ctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 2:1609621‑M1/25‑100 (MQ=255)
ctacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 1:2842590‑M1/25‑100 (MQ=255)
tacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc > 2:118970‑M1/24‑100 (MQ=255)
tacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc > 1:2074694‑M1/24‑100 (MQ=255)
tacggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 1:2207348‑M1/24‑99 (MQ=255)
cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc < 1:1521425/100‑1 (MQ=255)
acggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTTCCGGATGCGGCGTAAACACCTTATCCGGCCt < 2:490748‑M1/78‑1 (MQ=255)
acggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 2:1239239‑M1/78‑1 (MQ=255)
acggagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt > 1:2514577‑M1/23‑100 (MQ=255)
aaTTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc < 2:1161344/100‑1 (MQ=255)
gagggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg < 2:1517692‑M1/81‑1 (MQ=255)
tttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg > 2:1508036/1‑100 (MQ=255)
agggtgcgggaatttgtcGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg > 2:2642864‑M1/19‑100 (MQ=255)
agggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCAGCAGGCAGTCGACACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg > 2:526647‑M1/19‑100 (MQ=255)
nggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCctaccga < 1:1179436‑M1/83‑4 (MQ=255)
gggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGGCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg < 2:2658538‑M1/82‑1 (MQ=255)
gggtgcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 2:831398‑M1/83‑1 (MQ=255)
ataCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 2:142597/100‑1 (MQ=255)
taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg > 1:2449423/1‑100 (MQ=255)
taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg < 1:322434/100‑1 (MQ=255)
gcgggaatttgtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGAGGGt < 1:2298003‑M1/87‑1 (MQ=255)
cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg > 1:2608767/1‑100 (MQ=255)
cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg > 1:1051928/1‑100 (MQ=255)
ggaattagtaGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCg > 1:2234307‑M1/11‑100 (MQ=255)
aTGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg > 1:1842694/1‑100 (MQ=255)
aTGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCAGCAGGCAGTCAGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACGGAGGGTGCgg < 2:2048955/100‑1 (MQ=17)
tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg < 1:658276/100‑1 (MQ=255)
gtaGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt > 1:1513131‑M1/4‑99 (MQ=255)
ggcggcCTGACAAGACGCGCGAGCGCCCGATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa < 1:2664145/96‑1 (MQ=14)
ctgcCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAAGCGGGGGGCGGGCAtgt > 1:298692/3‑96 (MQ=2)
gcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAg < 2:612734/100‑1 (MQ=17)
gatcttAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:6870/95‑1 (MQ=255)
tGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCTTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc < 2:1697877/100‑1 (MQ=25)
gATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt < 2:349523/100‑1 (MQ=38)
gACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa > 2:959398/1‑100 (MQ=38)
cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:629060/1‑100 (MQ=38)
cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:1076268/1‑100 (MQ=38)
cgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcg > 1:837543/1‑100 (MQ=38)
gAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc < 2:1929064/100‑1 (MQ=35)
|
GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGC > NC_000913/4325723‑4325921
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
