Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I1 R1
|
82 |
135.0 |
6815619 |
92.9% |
6331710 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,322,662 |
(A)7→6 |
intergenic (‑157/+71) |
secG ← / ← glmM |
preprotein translocase membrane subunit/phosphoglucosamine mutase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,322,656 | 0 | A | . | 94.8%
| 484.7
/ 18.8
| 116 | intergenic (‑151/+77) | secG/glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| Reads supporting (aligned to +/- strand): ref base A (0/6); new base . (47/63); total (47/69) |
| Fisher's exact test for biased strand distribution p-value = 7.97e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 126 total aligned reads displayed.
GGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGAAAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTACTGC > NC_000913/3322561‑3322750
|
aGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGaaaaaac < 1:2360149/100‑2 (MQ=255)
gTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGaaaaaaca > 1:3310517/1‑98 (MQ=255)
tttttAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGaaaaaacag < 1:2613311/100‑4 (MQ=255)
ttttAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGaaaaaacagc > 1:3055140/1‑96 (MQ=255)
tttAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCa < 2:1078258/100‑1 (MQ=255)
tttAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCa > 1:2572660/1‑100 (MQ=255)
taTCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTACCGCATTGTATCAACTGCGG‑AAAAAACAGCaaaa < 1:1436354/99‑1 (MQ=255)
aaTCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCaaaa > 1:3230502/1‑100 (MQ=255)
aTCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAAc > 1:2900865/1‑100 (MQ=255)
aTCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGC‑AAAAAAAACAGCAAAAc < 2:218192/100‑1 (MQ=255)
aTCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTACCGCATTGTATCAACTGCGG‑AAAAAACAGCaaaaa > 2:1436351/1‑99 (MQ=255)
tCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGTATTGTATCAACTGCGG‑AAAAAACAGCAAAAcc < 1:3224279/100‑1 (MQ=255)
tCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAAcc > 2:1344339/1‑100 (MQ=255)
tCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAAcc > 1:924265/1‑100 (MQ=255)
ttCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAt < 1:1258267/100‑1 (MQ=255)
tCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtg < 2:1963268/100‑1 (MQ=255)
tCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtg < 1:1144180/100‑1 (MQ=255)
tCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAt < 2:2120103/99‑1 (MQ=255)
cccACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGAAAAAAACAGCAAAACCGAtg < 1:1029477/100‑1 (MQ=255)
cccACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtgt > 1:1814366/1‑100 (MQ=255)
cccACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtgt > 2:127145/1‑100 (MQ=255)
cccACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtgt > 2:3212544/1‑100 (MQ=255)
ccACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGAtgtg > 1:2100833/1‑100 (MQ=255)
aCTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGtt > 2:78672/1‑100 (MQ=255)
cTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTc > 2:1721759/1‑100 (MQ=255)
cTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTc < 1:1876291/100‑1 (MQ=255)
gAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGc < 2:3181881/100‑1 (MQ=255)
gAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGc < 1:1054440/100‑1 (MQ=255)
gAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGc > 1:3111983/1‑100 (MQ=255)
aaGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCt < 1:1554212/100‑1 (MQ=255)
aaGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCt < 1:542/100‑1 (MQ=255)
aGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTg < 2:922606/100‑1 (MQ=255)
aGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTg < 1:788140/100‑1 (MQ=255)
aGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTg < 2:607766/100‑1 (MQ=255)
aGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTA‑AAAAAAAAAAAAAAAACAGCAAAACCGATGTGTTCGCTg < 2:114079/100‑1 (MQ=255)
gCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTga < 1:2637263/100‑1 (MQ=255)
ggTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGaa < 1:870503/100‑1 (MQ=255)
ggTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGaa < 1:690446/100‑1 (MQ=255)
tgtgAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGaaaa > 2:3381670/1‑100 (MQ=255)
tgAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGaaaaaa > 2:2873421/1‑100 (MQ=255)
gAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAg < 2:51335/100‑1 (MQ=255)
gAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAg > 2:1724764/1‑100 (MQ=255)
aTACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGc > 2:832280/1‑100 (MQ=255)
tACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCg < 1:2326780/100‑1 (MQ=255)
tctaCCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTTTTCGCTGAGAAAAAAGGCGAc < 1:2110430/97‑1 (MQ=255)
cTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGAc < 1:1153016/100‑1 (MQ=255)
cTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGAc < 1:1449833/100‑1 (MQ=255)
cTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGAc < 1:2579187/100‑1 (MQ=255)
aaCCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACaa > 1:217784/1‑100 (MQ=255)
aaCCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACaa > 1:934879/1‑100 (MQ=255)
aaCCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACaa < 1:53687/100‑1 (MQ=255)
aCCAAAGCGAATGCCCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACaga > 2:2110426/1‑98 (MQ=255)
ctaaaGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATGAACAGAGGAAAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACaa < 2:2207683/97‑1 (MQ=255)
cAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcg > 1:1890780/1‑100 (MQ=255)
cAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcg > 2:838877/1‑100 (MQ=255)
aaGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcgcc < 2:2309111/100‑1 (MQ=255)
aGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcgccg < 1:3001072/100‑1 (MQ=255)
aGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcgccg < 2:1345948/100‑1 (MQ=255)
gCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATcgccgc < 2:1890776/100‑1 (MQ=255)
cGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCgccgcc < 2:1809533/100‑1 (MQ=255)
cGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCgccgcc < 2:1063522/100‑1 (MQ=255)
cGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCgccgcc < 1:1724767/100‑1 (MQ=255)
aTGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCttt < 2:3111971/100‑1 (MQ=255)
gACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCttttt < 2:1295536/100‑1 (MQ=255)
aCCTTCGGAAGGACAATTTTATCGCATTGTAGCAACTGCGGAAAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCttttt < 2:2845569/100‑1 (MQ=255)
aCCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTa > 2:1595390/1‑100 (MQ=255)
aCCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTa < 1:1337099/100‑1 (MQ=255)
aCCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTa < 1:2507701/100‑1 (MQ=255)
aCCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTa > 1:2900498/1‑100 (MQ=255)
gCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGt < 2:449979/100‑1 (MQ=255)
gCAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGt > 2:3289015/1‑100 (MQ=255)
cAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGGCGATTGTCGCCttttttctcagcg < 2:281590/100‑9 (MQ=25)
cAAGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGGCGATTGTCGCCttttttctcagcg < 2:1823922/100‑9 (MQ=25)
aaGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTa < 2:744365/100‑1 (MQ=255)
aaGGGCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTa < 1:2474378/100‑1 (MQ=255)
ggCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCt < 1:127144/100‑1 (MQ=255)
ggCAATTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCt < 2:1238386/100‑1 (MQ=255)
aaTTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAAc > 2:1202502/1‑100 (MQ=255)
aTTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACg > 2:1683329/1‑100 (MQ=255)
aTTTTATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACg > 2:2833673/1‑100 (MQ=255)
ttttATCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGc < 2:1449973/100‑1 (MQ=255)
tCGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTaa > 2:596450/1‑100 (MQ=255)
cGCATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTaaa > 2:1047572/1‑100 (MQ=255)
tcATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAAc < 1:2165659/99‑1 (MQ=255)
cATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACACTCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACg < 2:2100829/100‑1 (MQ=255)
cATTGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAAca > 2:2165654/1‑99 (MQ=255)
tGTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCt > 2:982813/1‑100 (MQ=255)
cttATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCt < 1:314877/98‑1 (MQ=255)
catcggttttGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCt > 2:3310329/10‑100 (MQ=255)
gTATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAGAGGCGACAATCGCCGCCGTTTTAGCCAGTTATCTAACGCTTTAAACGGc > 2:1103020/1‑98 (MQ=255)
gTATAAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCtt < 1:838877/100‑1 (MQ=255)
tATCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCtag > 2:314876/1‑98 (MQ=255)
aTCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCtttt < 1:2650410/100‑1 (MQ=255)
aTCAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCtttt < 1:3212557/100‑1 (MQ=255)
cAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTAc < 2:403662/100‑1 (MQ=255)
cAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTAc > 1:199967/1‑100 (MQ=255)
cAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTAc < 1:1307771/100‑1 (MQ=255)
cAACTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTAc < 2:924264/100‑1 (MQ=255)
aCTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTACTg < 1:832280/100‑1 (MQ=255)
cTGCGG‑AAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTACTGc > 1:624290/1‑100 (MQ=255)
|
GGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGACCTTCGCAAGGGCAATTTTATCGCATTGTATCAACTGCGGAAAAAAACAGCAAAACCGATGTGTTCGCTGAGAAAAAAGGCGACAATCGCCGCCTTTTTAGCCAGTTATCTAACGCTTTAAACGGCTTTTACTGC > NC_000913/3322561‑3322750
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
