Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F232 I0 R1
|
243 |
156.3 |
7646460 |
93.8% |
7172379 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,185,193 |
C→T |
42.1% |
P1317S (CCG→TCG) |
rpoB → |
RNA polymerase, beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,185,193 | 0 | C | T | 42.1%
| 94.7
/ 168.2
| 158 | P1317S (CCG→TCG) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (49/42); new base T (31/35); total (80/78) |
| Fisher's exact test for biased strand distribution p-value = 4.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 160 total aligned reads displayed.
GCATACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGTCA > NC_000913/4185094‑4185292
|
tACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGATGGCAACCATCAGATGGAGCCgg < 1:2276457/100‑1 (MQ=255)
acacCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCggg < 1:3399413/100‑1 (MQ=255)
acacCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCggg < 1:1918154/100‑1 (MQ=255)
cacCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCggac > 1:108809/1‑98 (MQ=255)
cacCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGc > 2:2927206/1‑100 (MQ=255)
acCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCa < 2:1008792/100‑1 (MQ=255)
ccTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATg > 2:2341942/1‑100 (MQ=255)
cTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGc > 2:1875037/1‑100 (MQ=255)
cTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGc < 1:2989985/100‑1 (MQ=255)
cTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGc > 2:3407404/1‑100 (MQ=255)
tGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGcc > 1:222448/1‑100 (MQ=255)
tGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGcc < 2:534661/100‑1 (MQ=255)
cAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAg < 2:487288/100‑1 (MQ=255)
cAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCAGGCATGCCAg < 2:1383571/100‑1 (MQ=255)
aGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGa > 2:3619965/1‑100 (MQ=255)
aaaTGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATc < 2:1068928/100‑1 (MQ=255)
aaTGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATcc < 1:3815539/100‑1 (MQ=255)
cTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCCAGATGTATAAAAACCTCGTGGACGGCAACCAGCAGATGGAGTCGGGCATGCTAGAATCCTTCa > 2:174108/1‑100 (MQ=255)
cTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCa > 1:3344652/1‑100 (MQ=255)
cTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCa > 2:808533/1‑100 (MQ=255)
tCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCaa > 1:1219086/1‑100 (MQ=255)
tCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCaa > 2:763763/1‑100 (MQ=255)
cACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAAc < 1:3605127/100‑1 (MQ=255)
cACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAAc < 1:798357/100‑1 (MQ=255)
cACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAAc > 1:2410376/1‑100 (MQ=255)
cACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAAc < 1:3348090/100‑1 (MQ=255)
aCCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACg < 2:2108262/100‑1 (MQ=255)
ccGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGt > 1:2769030/1‑100 (MQ=255)
gTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTAt > 1:2298219/1‑100 (MQ=255)
gTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTAt > 1:3546535/1‑100 (MQ=255)
tAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCATGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTAttg < 2:2852303/100‑1 (MQ=255)
aaGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCATTCAACg < 2:2007026/94‑1 (MQ=255)
aaGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTAttgt > 1:2494490/1‑100 (MQ=255)
gTCTGATGACGTGAACGGTCTTACCAAGGTGTATAAAAACATCGTGGACGGAAACCATCAGATGGATCCGGGCATGCTAGAATCCTGGCACGTAtt > 2:3355118/1‑96 (MQ=255)
gTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTAttgttg > 1:842346/1‑100 (MQ=255)
cTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGaa > 2:129782/1‑100 (MQ=255)
tgatgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGaaa < 2:473170/100‑1 (MQ=255)
tgatgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGaca > 2:2512148/1‑98 (MQ=255)
gatgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAag < 1:3374139/100‑1 (MQ=255)
atgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAaga < 2:2196202/100‑1 (MQ=255)
tgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAagag < 1:2482718/100‑1 (MQ=255)
tgaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAagag < 1:1081345/100‑1 (MQ=255)
gaCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAgaga < 2:2791192/100‑1 (MQ=255)
aCGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGAt > 2:1722865/1‑100 (MQ=255)
cGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGAtt > 1:2499234/1‑100 (MQ=255)
gTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGAttc < 2:3605548/100‑1 (MQ=255)
gTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGAttc < 1:1368574/100‑1 (MQ=255)
tGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGAttcg < 1:3407430/100‑1 (MQ=255)
aaCGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCCTGCCAGAATCCCTCAACGTATTGTTGAAAGAGAttcgtt > 2:2686113/1‑100 (MQ=255)
gTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCt > 2:834216/1‑100 (MQ=255)
cGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTgg < 1:683598/100‑1 (MQ=255)
gTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTggg < 2:1034147/100‑1 (MQ=255)
gTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATGCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTggg < 1:2695093/100‑1 (MQ=255)
gTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTggg < 2:2396775/100‑1 (MQ=255)
gATGTATAAAAACATTGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAAc > 1:1290476/1‑100 (MQ=255)
aTGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAGAGAGATTCGTTCGCTGGGTATCAACa < 1:2330419/100‑1 (MQ=255)
tGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACAt > 2:1454910/1‑100 (MQ=255)
gTATAAAAACATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATc > 1:3151873/1‑100 (MQ=255)
gTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATc > 1:846385/1‑100 (MQ=255)
gTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATc < 2:3331418/100‑1 (MQ=255)
taAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGaa > 1:2416017/1‑100 (MQ=255)
aaaaCATCGTGGACGGCAACCATCAGATGGAGCCGGGCCTGCCAGAATCCCTCAACGTATTGTTGCAAGAGATTCGTTCGCTGGGTATCAACATCGAACt > 2:1708879/1‑100 (MQ=255)
aaaaCATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACt < 1:2225766/100‑1 (MQ=255)
aaaaCATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACt > 1:2177987/1‑100 (MQ=255)
aaaCATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTg < 2:394778/100‑1 (MQ=255)
aaCATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTgg < 1:142867/100‑1 (MQ=255)
aaCATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTgg < 2:719308/100‑1 (MQ=255)
aCATCGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGa < 1:2149911/100‑1 (MQ=255)
aTCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAg < 1:472117/100‑1 (MQ=255)
cGTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGAc > 1:1848509/1‑100 (MQ=255)
cGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGAc < 1:960596/100‑1 (MQ=255)
gTGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACg < 1:2988150/100‑1 (MQ=255)
gTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACg < 1:2675951/100‑1 (MQ=255)
gTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACg < 2:881299/100‑1 (MQ=255)
tGGACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGa > 1:1521727/1‑100 (MQ=255)
ggACGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAg > 2:1306656/1‑100 (MQ=255)
aCGGCAACCATCAGATCGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGTGTATCAACATCGAACTGGAAGACGAGTa < 2:1558635/100‑1 (MQ=255)
cGGCAACCATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTaa > 2:1435181/1‑100 (MQ=255)
cGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTaa > 1:2756806/1‑100 (MQ=255)
ggCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAAt < 1:348267/100‑1 (MQ=255)
gCAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAAtt > 1:1215374/1‑100 (MQ=255)
cAACCATCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATtc > 2:241153/1‑100 (MQ=255)
cATCAGATTGAGGAGGGCATGCCATAATGCTGCAACGTATTGTTGAAAGGGATTCGTTCGCTGGGTATCAACATCGAGCTGGAAGACGAGTAGTTCTCGc < 2:1118914/100‑1 (MQ=255)
cATCAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGc > 2:2775863/1‑100 (MQ=255)
aTCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCt > 2:2729856/1‑100 (MQ=255)
aTCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCt > 1:1902346/1‑100 (MQ=255)
tCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTc > 1:929035/1‑100 (MQ=255)
tCAGATGGAGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTc < 1:1520645/100‑1 (MQ=255)
cAGATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCa < 1:3155125/100‑1 (MQ=255)
gATGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCaaa > 1:322226/1‑100 (MQ=255)
attgAGCCGAGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAAc < 2:2689912/97‑1 (MQ=255)
aTGGAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCaaan < 2:348910/100‑2 (MQ=255)
tGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTTGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTAGCTCAAACa > 2:2521898/1‑100 (MQ=255)
gAGTCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAgg > 2:1527790/1‑100 (MQ=255)
gAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAgg < 2:3546508/100‑1 (MQ=255)
aGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGt > 2:2064568/1‑100 (MQ=255)
aGCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGt > 1:3466487/1‑100 (MQ=255)
gCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGTc > 1:516868/1‑100 (MQ=255)
gCCGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGTc > 1:2267316/1‑100 (MQ=255)
ccGGGCATGCCAGAATCCCTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGTCa < 1:2927227/100‑1 (MQ=255)
|
GCATACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAAAACATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGAACTGGAAGACGAGTAATTCTCGCTCAAACAGGTCA > NC_000913/4185094‑4185292
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
