Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F53 I1 R1	64	112.2	5657101	94.0%	5317674	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,182,712	G→A	A55T (GCC→ACC)	zupT →	zinc transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,182,712	0	G	A	96.5%	381.4 / 2.4	115	A55T (GCC→ACC)	zupT	zinc transporter
Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (53/57); total (55/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01

Only 100 of 115 total aligned reads displayed.

CGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTGCCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCATGTTGCCA  >  NC_000913/3182615‑3182807

cGTTCTCAGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTAcc                                                                                               >  2:1488412/1‑100 (MQ=255)

    ctcGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCa                                                                                            <  1:1940424/99‑1 (MQ=255)

    ctcGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCAc                                                                                           >  2:1581890/1‑100 (MQ=255)

    ctcGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCAc                                                                                           >  1:1032570/1‑100 (MQ=255)

    ctcGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCAc                                                                                           <  2:1306407/100‑1 (MQ=255)

      cGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTa                                                                                         <  2:478424/100‑1 (MQ=255)

      cGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTa                                                                                         >  2:13899/1‑100 (MQ=255)

        ggCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTagc                                                                                       <  2:2617142/100‑1 (MQ=255)

           aaaaaCCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTGCCGCACTagcagc                                                                                    >  2:1502354/1‑100 (MQ=255)

           aaaaaCCCGCGAACCGGTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAAGGGAAATGCTTCCTACCGCACTagca                                                                                      <  1:2378214/98‑1 (MQ=255)

              aaCCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGa                                                                                 <  2:2704214/100‑1 (MQ=255)

              aaCCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGa                                                                                 <  2:1738647/100‑1 (MQ=255)

                cccTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAg                                                                               <  2:157184/100‑1 (MQ=255)

                cccTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAg                                                                               >  1:2388714/1‑100 (MQ=255)

                  cTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTagcaagatcggaa                                                                             >  1:994027/1‑91 (MQ=255)

                  cTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGa                                                                             >  2:375381/1‑100 (MQ=255)

                  cTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGa                                                                             <  1:784916/100‑1 (MQ=255)

                   tagagctgCTTACTGGCGTTTTAGCTGGGTTTTGCGGCGGGGATGATGTGGCTCATCTAATTAATGGAAATGCGCCCTACCGCACGAGCAGCTg                                                                                  <  1:937482/87‑1 (MQ=255)

                   tCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGaa                                                                            <  2:2139775/100‑1 (MQ=255)

                    cGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAAt                                                                           >  2:1972062/1‑100 (MQ=255)

                    cGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAAt                                                                           >  1:1304000/1‑100 (MQ=255)

                    cGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAAt                                                                           >  1:200881/1‑100 (MQ=255)

                     gAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATg                                                                          >  1:2661755/1‑100 (MQ=255)

                      aaCCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGt                                                                         <  1:1673990/100‑1 (MQ=255)

                       aCCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTc                                                                        <  2:1461763/100‑1 (MQ=255)

                          gCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTCCCGCACTAGCAGCTGAAGGAATGTCGcc                                                                     <  1:2644220/100‑1 (MQ=255)

                          gCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGcc                                                                     <  1:1825118/100‑1 (MQ=255)

                              aCTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCtgtg                                                                 <  1:502113/100‑1 (MQ=255)

                               cTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTgtgt                                                                >  1:1895908/1‑100 (MQ=255)

                                tGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGtt                                                               <  2:792199/100‑1 (MQ=255)

                                   cGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTggg                                                            >  2:2251494/1‑100 (MQ=255)

                                   cGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTggg                                                            >  1:95254/1‑100 (MQ=255)

                                    gTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGt                                                           <  1:2338162/100‑1 (MQ=255)

                                    gTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGt                                                           <  2:93992/100‑1 (MQ=255)

                                     ttttCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGtt                                                          >  2:2728808/1‑100 (MQ=255)

                                        tCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATg                                                       >  2:2535310/1‑100 (MQ=255)

                                         cGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTGCCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATgg                                                      >  1:1786442/1‑100 (MQ=255)

                                         cGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATgg                                                      <  2:2475015/100‑1 (MQ=255)

                                         cGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATgg                                                      <  1:2750345/100‑1 (MQ=255)

                                          gCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGa                                                     >  2:2103154/1‑100 (MQ=255)

                                             aGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATg                                                  <  2:1785829/100‑1 (MQ=255)

                                             aGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATg                                                  >  2:742669/1‑100 (MQ=255)

                                              gtttttGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGt                                                 <  2:1083598/98‑1 (MQ=255)

                                              ggTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGt                                                 <  1:906674/100‑1 (MQ=255)

                                              ggTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGt                                                 >  2:2236797/1‑100 (MQ=255)

                                               gTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGATATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGtt                                                <  1:2147922/100‑1 (MQ=255)

                                               gTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGtt                                                >  2:2064941/1‑100 (MQ=255)

                                                tgttGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGttt                                               >  2:1915563/3‑100 (MQ=255)

                                                 tttGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTa                                              <  1:2127164/100‑1 (MQ=255)

                                                 tttGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTa                                              <  1:2103139/100‑1 (MQ=255)

                                                   tGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATc                                            <  1:365690/100‑1 (MQ=255)

                                                   tGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATc                                            <  2:2541764/100‑1 (MQ=255)

                                                    gcggcgGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCt                                           <  1:1734567/100‑1 (MQ=255)

                                                     cggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCtt                                          <  2:900342/100‑1 (MQ=255)

                                                     cggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCtt                                          >  1:2669706/1‑100 (MQ=255)

                                                     cggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCtt                                          >  1:2409314/1‑100 (MQ=255)

                                                      ggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTc                                         <  2:1185561/100‑1 (MQ=255)

                                                      ggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTc                                         <  2:1032577/100‑1 (MQ=255)

                                                      ggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTc                                         >  2:1659561/1‑100 (MQ=255)

                                                      ggcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTc                                         >  1:2352015/1‑100 (MQ=255)

                                                       gcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCg                                        <  2:2352034/100‑1 (MQ=255)

                                                       gcggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCg                                        >  1:2545229/1‑100 (MQ=255)

                                                        cggGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCgg                                       >  1:2062961/1‑100 (MQ=255)

                                                         ggtgATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCgg                                       <  1:1747169/96‑1 (MQ=255)

                                                          gggATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTc                                     >  2:2107439/1‑100 (MQ=255)

                                                           ggATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCt                                    >  1:651595/1‑100 (MQ=255)

                                                                aTGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTg                               >  1:1710784/1‑100 (MQ=255)

                                                                aTGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTg                               <  2:2742781/100‑1 (MQ=255)

                                                                 tGTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTgg                              >  2:2565416/1‑100 (MQ=255)

                                                                  gTTGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGc                             >  1:79231/1‑100 (MQ=255)

                                                                    tGCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTa                           <  2:2669894/100‑1 (MQ=255)

                                                                     gCTCATCTCATTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTAt                          >  1:1786617/1‑100 (MQ=255)

                                                                      ctcatctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTAtt                         >  2:8222/1‑100 (MQ=255)

                                                                      ctcatctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTAtt                         >  2:2341643/1‑100 (MQ=255)

                                                                       tcatctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTAttt                        >  1:819926/1‑100 (MQ=255)

                                                                        catctcatTAATGGAAATGCTTCCTGCCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTAtttt                       <  1:1502342/100‑1 (MQ=255)

                                                                         atctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTg                      <  2:616611/100‑1 (MQ=255)

                                                                         atctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTg                      <  2:2062976/100‑1 (MQ=255)

                                                                          tctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTgg                     <  2:2661778/100‑1 (MQ=255)

                                                                           ctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGc                    >  1:563262/1‑100 (MQ=255)

                                                                           ctcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCCTGGCTATTTTGGc                    <  2:1895922/100‑1 (MQ=255)

                                                                            tcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGcc                   >  1:2016921/1‑100 (MQ=255)

                                                                            tcatTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGcc                   <  1:776661/100‑1 (MQ=255)

                                                                             catTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCt                  >  1:2602901/1‑100 (MQ=255)

                                                                             catTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCt                  >  1:2743231/1‑100 (MQ=255)

                                                                             catTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCt                  >  1:560908/1‑100 (MQ=255)

                                                                              atTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTg                 >  2:527447/1‑100 (MQ=255)

                                                                              atTAATGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTg                 >  2:1109092/1‑100 (MQ=255)

                                                                               ttAATGGAAATGCTTCCTACCGCACTAGCAGCTGCAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTgg                <  1:1493820/100‑1 (MQ=255)

                                                                                 aaTGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGAc              >  1:985454/1‑100 (MQ=255)

                                                                                 aaTGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGAc              >  2:675116/1‑100 (MQ=255)

                                                                                  aTGGAAATGCTTCCTGCCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGAcc             <  2:1786455/100‑1 (MQ=255)

                                                                                  aTGGAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGAcc             >  1:2255787/1‑100 (MQ=255)

                                                                                     gAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCa          <  2:560913/100‑1 (MQ=255)

                                                                                     gAAATGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCa          <  1:166763/100‑1 (MQ=255)

                                                                                        aTGCTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTAGACCGCATGt       <  1:495548/100‑1 (MQ=255)

                                                                                           cTTCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGTATGTTGc    <  2:2409334/100‑1 (MQ=255)

                                                                                            ttCCTACCGCACTATCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTTCTTGGCTATTTTGGCCTGGACCGCATGTTGc    <  1:1737806/99‑1 (MQ=255)

                                                                                             tCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCATGTTGCca  >  2:79509/1‑100 (MQ=255)

                                                                                             tCCTACCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCATGTTGCca  <  2:985461/100‑1 (MQ=255)

CGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGCTCATCTCATTAATGGAAATGCTTCCTGCCGCACTAGCAGCTGAAGGAATGTCGCCTGTGTTGGGTTATGGAATGTTTATCTTCGGTCTGCTTGGCTATTTTGGCCTGGACCGCATGTTGCCA  >  NC_000913/3182615‑3182807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A