Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F53 I1 R1 64 112.2 5657101 94.0% 5317674 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,244,933 T→C intergenic (‑192/‑291) uxaC ← / → exuT uronate isomerase/hexuronate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,244,9330TC100.0% 457.0 / NA 123intergenic (‑192/‑291)uxaC/exuTuronate isomerase/hexuronate transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (57/66);  total (57/66)

Only 100 of 126 total aligned reads displayed.

AGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGTCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACGG  >  NC_000913/3244837‑3245025
                                                                                                |                                                                                            
aGTTAGATCAATAAACGTAGTTAAAAAAATTAGTCTCAACGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGcccc                                                                                           <  1:1986541/100‑1 (MQ=255)
aGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGcccc                                                                                           <  2:1147536/100‑1 (MQ=255)
 gTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCt                                                                                          >  1:346077/1‑100 (MQ=255)
 gTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCt                                                                                          >  2:1796865/1‑100 (MQ=255)
 gTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCt                                                                                          >  1:1451336/1‑100 (MQ=255)
  ttAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTa                                                                                         <  2:1678361/100‑1 (MQ=255)
  ttAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTa                                                                                         <  2:1222568/100‑1 (MQ=255)
   tAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTAc                                                                                        >  1:2145834/1‑100 (MQ=255)
   tAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTAc                                                                                        <  2:1277877/100‑1 (MQ=255)
      aTCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACaaa                                                                                     >  1:131941/1‑100 (MQ=255)
       tCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAat                                                                                    <  2:1099787/100‑1 (MQ=255)
        cAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAata                                                                                   >  1:1583280/1‑100 (MQ=255)
        cAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAata                                                                                   >  2:1015744/1‑100 (MQ=255)
          aTAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATAtt                                                                                 <  2:1601984/100‑1 (MQ=255)
           tAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTc                                                                                >  1:1238985/1‑100 (MQ=255)
           tAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTc                                                                                >  1:1238391/1‑100 (MQ=255)
            aaaCGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTcc                                                                               <  2:1113448/100‑1 (MQ=255)
            aaaCGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTcc                                                                               >  2:386500/1‑100 (MQ=255)
             aaCGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTccc                                                                              >  1:445604/1‑100 (MQ=255)
              aCGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCca                                                                             <  2:179805/100‑1 (MQ=255)
              aCGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCca                                                                             >  1:354394/1‑100 (MQ=255)
                 tAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACAt                                                                          >  2:1375847/1‑100 (MQ=255)
                 tAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACAt                                                                          >  1:932991/1‑100 (MQ=255)
                  aGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACAtt                                                                         <  1:344756/100‑1 (MQ=255)
                   gTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACAttt                                                                        >  1:2176600/1‑100 (MQ=255)
                   gTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACAttt                                                                        <  2:893777/100‑1 (MQ=255)
                    ttAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtg                                                                       <  1:1042771/100‑1 (MQ=255)
                    ttAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtg                                                                       <  2:382859/100‑1 (MQ=255)
                    ttAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtg                                                                       <  1:2085405/100‑1 (MQ=255)
                     tAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtgt                                                                      >  1:1916597/1‑100 (MQ=255)
                      aaaaaaaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtgtg                                                                     <  1:1270525/100‑1 (MQ=255)
                      aaaaaaaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTtgtg                                                                     <  2:771579/100‑1 (MQ=255)
                        aaaaaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGAt                                                                   >  1:2090491/1‑100 (MQ=255)
                         aaaaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACCAATATTCCCACATTTGTGAtn                                                                  <  1:2748395/100‑2 (MQ=255)
                           aaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGc                                                                <  1:1015737/100‑1 (MQ=255)
                           aaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGc                                                                <  1:184619/100‑1 (MQ=255)
                           aaTTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGc                                                                <  1:1910168/100‑1 (MQ=255)
                             ttACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGctc                                                              >  2:530656/1‑100 (MQ=255)
                                  ctcAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCAcc                                                         >  1:1284390/1‑100 (MQ=255)
                                    cAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCtt                                                       >  2:2408667/1‑100 (MQ=255)
                                     aaaGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCttt                                                      >  2:2739657/1‑100 (MQ=255)
                                     aaaGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCttt                                                      >  1:2381603/1‑100 (MQ=255)
                                        gTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTaa                                                   <  2:445609/100‑1 (MQ=255)
                                        gTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTaa                                                   <  2:578090/100‑1 (MQ=255)
                                        gTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTaa                                                   >  1:2092710/1‑100 (MQ=255)
                                        gTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTaa                                                   <  1:223518/100‑1 (MQ=255)
                                         tGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTaaa                                                  <  2:259799/100‑1 (MQ=255)
                                          ggTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAg                                                 >  2:2021869/1‑100 (MQ=255)
                                          ggTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAg                                                 >  1:1185825/1‑100 (MQ=255)
                                           gTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGt                                                >  2:290430/1‑100 (MQ=255)
                                           gTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGt                                                >  1:1634358/1‑100 (MQ=255)
                                             aaaTCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTg                                              <  2:1238399/100‑1 (MQ=255)
                                             aaaTCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTg                                              <  2:1238993/100‑1 (MQ=255)
                                               aTCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTa                                            <  1:2350404/100‑1 (MQ=255)
                                               aTCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTa                                            <  1:247047/100‑1 (MQ=255)
                                                tctcGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTAt                                           >  1:2702987/1‑100 (MQ=255)
                                                tctcGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTAt                                           <  2:922387/100‑1 (MQ=255)
                                                tctcGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTAt                                           >  1:386710/1‑100 (MQ=255)
                                                 ctcGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATg                                          <  2:2717447/100‑1 (MQ=255)
                                                    gCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACa                                       >  2:2765115/1‑100 (MQ=255)
                                                     cTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACaa                                      <  2:2607963/100‑1 (MQ=255)
                                                     cTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACaa                                      <  1:1069791/100‑1 (MQ=255)
                                                       gCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTCATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTTTATGACa                                       >  1:1198753/1‑97 (MQ=255)
                                                       gCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGt                                    <  1:1796852/100‑1 (MQ=255)
                                                       gCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGt                                    <  1:2607235/100‑1 (MQ=255)
                                                          ggCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTAt                                 >  2:1812072/1‑100 (MQ=255)
                                                            ccGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCt                               <  2:2427468/100‑1 (MQ=255)
                                                             cgcgCCAGTACTGGCCTTGCGGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCtt                              <  2:2809044/100‑1 (MQ=255)
                                                                 ccAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTg                          <  2:2090506/100‑1 (MQ=255)
                                                                 ccAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTg                          <  2:2047490/100‑1 (MQ=255)
                                                                 ccAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTg                          <  2:2080358/100‑1 (MQ=255)
                                                                 ccAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTg                          <  2:2077813/100‑1 (MQ=255)
                                                                  cAGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGc                         <  2:1185833/100‑1 (MQ=255)
                                                                   aGTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGcc                        <  1:2198947/100‑1 (MQ=255)
                                                                    gTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCg                       >  2:1541751/1‑100 (MQ=255)
                                                                    gTACTGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCg                       <  2:1284398/100‑1 (MQ=255)
                                                                       cTGGCCTTGCTGTCGTCTGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCg                    >  1:1112401/1‑100 (MQ=255)
                                                                        tGGCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGc                   <  1:1865603/100‑1 (MQ=255)
                                                                         ggCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCa                  >  1:2230601/1‑100 (MQ=255)
                                                                         ggCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCa                  >  2:386166/1‑100 (MQ=255)
                                                                          gCCTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCaa                 >  1:2356726/1‑100 (MQ=255)
                                                                           ccTTGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCaaa                <  1:2007445/100‑1 (MQ=255)
                                                                             ttGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATc              <  2:2061235/100‑1 (MQ=255)
                                                                              tGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCa             <  1:28266/100‑1 (MQ=255)
                                                                              tGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCa             <  2:1634370/100‑1 (MQ=255)
                                                                              tGCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCa             >  2:2519713/1‑100 (MQ=255)
                                                                               gCTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCAt            >  2:1626693/1‑100 (MQ=255)
                                                                                cTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATa           <  2:2723637/100‑1 (MQ=255)
                                                                                cTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATa           <  2:354398/100‑1 (MQ=255)
                                                                                cTGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATa           >  1:1498797/1‑100 (MQ=255)
                                                                                 tGTCGTCAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATaa          >  1:694143/1‑100 (MQ=255)
                                                                                  gtcgtcAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAg         >  2:1248033/1‑100 (MQ=255)
                                                                                  gtcgtcAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAg         <  2:1451348/100‑1 (MQ=255)
                                                                                    cgtcAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTc       >  1:974281/1‑100 (MQ=255)
                                                                                     gtcAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCg      >  2:2070960/1‑100 (MQ=255)
                                                                                       cAGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGAc    >  2:903841/1‑100 (MQ=255)
                                                                                        aGGTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACg   >  1:1267218/1‑100 (MQ=255)
                                                                                         ggTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACgg  >  2:2579268/1‑100 (MQ=255)
                                                                                         ggTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACgg  <  1:1783286/100‑1 (MQ=255)
                                                                                         ggTAATGCCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACgg  >  1:837399/1‑100 (MQ=255)
                                                                                                |                                                                                            
AGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAAAGTGGTAAATCTCGCTGCAGGCCGCGCCAGTACTGGCCTTGCTGTCGTCAGGTAATGTCCCTACAAATATTCCCACATTTGTGATGGCTCTCACCTTTTAAAGTTGTATGACAAGTTATCTTTCTGCCGTCGCAAATCATAAGTCGACGG  >  NC_000913/3244837‑3245025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A