Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I0 R1
|
270 |
114.4 |
5840133 |
93.3% |
5448844 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,247,812 |
C→T |
35.9% |
Q14* (CAG→TAG) |
yqjA → |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,247,812 | 0 | C | T | 35.9%
| 115.5
/ 107.3
| 114 | Q14* (CAG→TAG) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Reads supporting (aligned to +/- strand): ref base C (35/38); new base T (22/19); total (57/57) |
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.85e-01 |
Only 100 of 118 total aligned reads displayed.
TTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCGGCGGC > NC_000913/3247714‑3247909
|
ttGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCa < 2:2682243/100‑1 (MQ=255)
tGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAg < 1:402054/100‑1 (MQ=255)
gCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAgg < 2:1591546/100‑1 (MQ=255)
tAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGAttt > 1:1532843/1‑100 (MQ=255)
tAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGAttt < 2:362041/100‑1 (MQ=255)
aGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGAtttt < 2:2007394/100‑1 (MQ=255)
gTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTg > 2:1574053/1‑100 (MQ=255)
gTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTg < 2:2111583/100‑1 (MQ=255)
tGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGa < 2:263969/100‑1 (MQ=255)
gCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGaa > 1:275688/1‑100 (MQ=255)
gCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGaa > 2:1793292/1‑100 (MQ=255)
cATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGaaa < 2:2830650/100‑1 (MQ=255)
aTCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAc > 2:2612355/1‑100 (MQ=255)
cTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAccc < 2:2164043/100‑1 (MQ=255)
cTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAccc < 1:1515905/100‑1 (MQ=255)
ttttAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCt > 1:1113383/1‑100 (MQ=255)
tttAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTg < 1:1654259/100‑1 (MQ=255)
tAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGc < 2:1667550/100‑1 (MQ=255)
aaaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGcc < 1:182241/100‑1 (MQ=255)
aaaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGcc < 2:1854814/100‑1 (MQ=255)
aaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCa > 1:431832/1‑100 (MQ=255)
aaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCaa > 1:792556/1‑100 (MQ=255)
ccAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATc > 2:731900/1‑100 (MQ=255)
ccAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATc < 1:423064/100‑1 (MQ=255)
cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc > 2:2222043/1‑100 (MQ=255)
cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc < 2:1294412/100‑1 (MQ=255)
cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc < 2:1066701/100‑1 (MQ=255)
cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATc < 2:1692227/100‑1 (MQ=255)
gTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCg < 2:759689/100‑1 (MQ=255)
ggCGTTAGCCGGTTCACCAGGAATAATGAATGGAACTTTAGACCCAATTGCTGCAAGCCCTGTGGCCGCAGGACGTTGAAACCCTGGCCAATCCATCgat > 1:1525113/1‑100 (MQ=255)
gTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAAT‑CATCgat‑ggat < 1:260128/100‑4 (MQ=255)
ttAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GAtt < 1:2139093/100‑1 (MQ=255)
tAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTg > 2:182447/1‑100 (MQ=255)
tAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTg < 1:371880/100‑1 (MQ=255)
aaCCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTgg > 1:1035363/1‑100 (MQ=255)
ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa > 2:197079/1‑100 (MQ=255)
ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa > 2:600441/1‑100 (MQ=255)
ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa < 2:893681/100‑1 (MQ=255)
gATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTTGGCGCAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccag < 1:695317/100‑4 (MQ=255)
gATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccag < 2:38055/100‑4 (MQ=255)
gATGCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCAt < 1:2648678/99‑1 (MQ=255)
aTTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCAtgt < 2:205741/100‑1 (MQ=255)
aTTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccagg < 2:1378470/100‑5 (MQ=255)
tCACCAGGAATAATGAATGCAACTTTTGACCCAATTGCTGCAAGCCTTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCAGCGAT‑CATTGGCAggttg < 1:2728875/100‑1 (MQ=255)
cACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCAtgttgt > 1:2858241/1‑100 (MQ=255)
cAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtt < 2:710959/100‑1 (MQ=255)
cAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtt > 2:657015/1‑100 (MQ=255)
ggAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtttt > 1:1597168/1‑100 (MQ=255)
gAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTg < 2:1423190/100‑1 (MQ=255)
aataatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGt < 2:2897526/100‑1 (MQ=255)
taatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCt < 1:2495564/100‑1 (MQ=255)
taatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCt < 2:2252897/100‑1 (MQ=255)
aatgaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCtt < 1:1651003/100‑1 (MQ=255)
aatgaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCtt > 2:623180/1‑100 (MQ=255)
gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1446677/100‑1 (MQ=255)
gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1891414/100‑1 (MQ=255)
gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1744192/100‑1 (MQ=255)
aatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgttt > 1:1654548/1‑100 (MQ=255)
tgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtttgt > 2:1431486/1‑100 (MQ=255)
gAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTaa > 1:1973424/1‑100 (MQ=255)
gAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGAATTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTaa > 1:1591259/1‑100 (MQ=255)
aaCTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAAt < 1:1869419/100‑1 (MQ=255)
aaCTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAAt > 1:858382/1‑100 (MQ=255)
gACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTc > 1:707770/1‑100 (MQ=255)
cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:434123/1‑100 (MQ=255)
cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:1315790/1‑100 (MQ=255)
cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 1:2108590/1‑100 (MQ=255)
cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:658436/1‑100 (MQ=255)
ccAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCtt < 2:543885/100‑1 (MQ=255)
cAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGCT‑GATTGGCAGGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTg > 2:75312/1‑100 (MQ=255)
cAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTg < 1:1017036/100‑1 (MQ=255)
aTTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGaa > 1:478218/1‑100 (MQ=255)
aTTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAACCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGaa < 1:1072688/100‑1 (MQ=255)
gctgcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 2:1759633/1‑100 (MQ=255)
gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc < 2:2032695/100‑1 (MQ=255)
gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 2:1823484/1‑100 (MQ=255)
gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 1:113097/1‑100 (MQ=255)
tgcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACgg > 2:172074/1‑100 (MQ=255)
gcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgc > 1:2456147/1‑100 (MQ=255)
gcAAGCCCTGTGGGCGTAGGATTCTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTCTTTTGAATTGTTTGTCATTTTGTTGCTTGAAAACGgc > 1:1983484/1‑100 (MQ=255)
gcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgc > 2:2251269/1‑100 (MQ=255)
cAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgct > 1:839797/1‑100 (MQ=255)
cAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgct > 1:2539619/1‑100 (MQ=255)
aGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttg > 2:171708/1‑100 (MQ=255)
aGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttg > 1:1071562/1‑100 (MQ=255)
gCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc > 2:212646/1‑100 (MQ=255)
gCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATTCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc < 1:2696050/100‑1 (MQ=255)
gCCCTGTGGGCGCAGGATTTTGAAACCCTCGCCACTCCATCGAT‑GATTCGCATGTTGTATTTCGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc > 1:978985/1‑100 (MQ=255)
cTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTc > 2:1197631/1‑100 (MQ=255)
cTGTGGGCGCAGGATCTGAAAACACTGGTTACTCTATCGAT‑GATTGGCATGTTGTATTTTGTTTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgctt < 1:2231427/99‑1 (MQ=255)
tgtgGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTcc < 1:2536533/100‑1 (MQ=255)
gtgGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcg > 2:1467215/1‑100 (MQ=255)
gtgGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcg > 1:1822935/1‑100 (MQ=255)
tgGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcgg < 2:389848/100‑1 (MQ=255)
ggCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcg > 1:2707833/1‑100 (MQ=255)
ggCGCAGGATTTTG‑AACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg < 2:2246760/100‑1 (MQ=255)
gcgtAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg < 2:32414/100‑1 (MQ=255)
gcgtAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg > 2:2561261/1‑100 (MQ=255)
cgcAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCggcggc < 2:286883/100‑1 (MQ=255)
cgcAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCggcggc > 1:1645668/1‑100 (MQ=255)
|
TTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCGGCGGC > NC_000913/3247714‑3247909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
