Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F255 I1 R1 77 120.7 6116409 93.2% 5700493 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,007,187 A→T D309V (GAC→GTC)  ygeW → putative carbamoyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,007,1870AT96.7% 406.3 / ‑1.7 123D309V (GAC→GTC) ygeWputative carbamoyltransferase
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base T (54/64);  total (55/68)
Fisher's exact test for biased strand distribution p-value = 6.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 123 total aligned reads displayed.

TGATGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGACTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAA  >  NC_000913/3007091‑3007283
                                                                                                |                                                                                                
 gATGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTgg                                                                                              <  1:1022462/100‑1 (MQ=255)
  aTGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTgg                                                                                              <  2:2571075/99‑1 (MQ=255)
  aTGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGc                                                                                             <  2:729859/100‑1 (MQ=255)
  aTGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGc                                                                                             <  2:2200438/100‑1 (MQ=255)
   tGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCa                                                                                            >  2:1165790/1‑100 (MQ=255)
    ggAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCAt                                                                                           <  1:200170/100‑1 (MQ=255)
       agagCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGt                                                                                        <  2:664248/100‑1 (MQ=255)
          gCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGTGCAACACAAAGTCTGGCATTGTACt                                                                                     <  2:148587/100‑1 (MQ=255)
          gCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACt                                                                                     >  2:806407/1‑100 (MQ=255)
            gTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGa                                                                                   >  2:2964032/1‑100 (MQ=255)
             tACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGaa                                                                                  >  2:1256995/1‑100 (MQ=255)
             tACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGaa                                                                                  >  2:2616662/1‑100 (MQ=255)
              aCTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAag                                                                                 <  1:1522643/100‑1 (MQ=255)
               cTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAaga                                                                                <  2:930218/100‑1 (MQ=255)
                tGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAagag                                                                               <  1:1165802/100‑1 (MQ=255)
                 gAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAgaga                                                                              >  2:1148849/1‑100 (MQ=255)
                 gAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAgaga                                                                              >  1:2305007/1‑100 (MQ=255)
                 gAATTGCTGCGAGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAgaga                                                                              <  2:1995080/100‑1 (MQ=255)
                  aaTTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAgat                                                                             <  1:350522/100‑1 (MQ=255)
                     tgctgcGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAgatgat                                                                          <  2:1932257/100‑1 (MQ=255)
                     tgctgcGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAgatgat                                                                          >  2:2339921/1‑100 (MQ=255)
                       ctgcGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATgg                                                                        <  2:1748248/100‑1 (MQ=255)
                          cgtgcgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAAc                                                                     <  1:1688207/100‑1 (MQ=255)
                           gtgcgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACt                                                                    <  1:718983/100‑1 (MQ=255)
                           gtgcgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACt                                                                    >  1:563778/1‑100 (MQ=255)
                            tgcgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTg                                                                   <  2:2216911/100‑1 (MQ=255)
                             gcgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGa                                                                  >  1:591200/1‑100 (MQ=255)
                              cgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGAc                                                                 >  2:1465326/1‑100 (MQ=255)
                              cgAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGAc                                                                 >  1:284387/1‑100 (MQ=255)
                               gAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGAcc                                                                >  1:1058109/1‑100 (MQ=255)
                               gAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGAcc                                                                >  1:1162719/1‑100 (MQ=255)
                                 aCGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCg                                                              >  1:493284/1‑100 (MQ=255)
                                  cGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGt                                                             >  2:1813217/1‑100 (MQ=255)
                                  cGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGt                                                             >  2:858353/1‑100 (MQ=255)
                                   gATAACAAAGGCTTAAAAGCAATGGAAAAACCGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGAATTGTACTGAAGAGATGATGGAACGCACCCGTg                                                            <  2:1324228/100‑1 (MQ=255)
                                    aTCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGa                                                           <  1:3036758/100‑1 (MQ=255)
                                     tCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAGAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGAt                                                          >  2:1955801/1‑100 (MQ=255)
                                     tCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGtaga                                                          >  2:2188046/1‑97 (MQ=255)
                                     tCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGAt                                                          <  1:854250/100‑1 (MQ=255)
                                     tCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGAt                                                          <  1:1837810/100‑1 (MQ=255)
                                         gAAGGCTTAAAAGCACTGGAAAAACAGTGTTTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCg                                                      <  2:1460901/100‑1 (MQ=255)
                                           aGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGaa                                                    <  1:125801/100‑1 (MQ=255)
                                            ggCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAg                                                   <  2:2610789/100‑1 (MQ=255)
                                             gCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGc                                                  >  2:2417037/1‑100 (MQ=255)
                                             gCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGc                                                  >  2:2449002/1‑100 (MQ=255)
                                              cTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGcc                                                 >  2:716825/1‑100 (MQ=255)
                                              cTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGcc                                                 >  2:2823748/1‑100 (MQ=255)
                                              cTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGcc                                                 >  1:1880724/1‑100 (MQ=255)
                                               ttAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGccc                                                <  1:2836613/100‑1 (MQ=255)
                                               ttAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGccc                                                <  1:946168/100‑1 (MQ=255)
                                                  aaaGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGt                                             <  2:2333202/100‑1 (MQ=255)
                                                  aaaGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGt                                             <  1:1278555/100‑1 (MQ=255)
                                                   aaGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTa                                            <  1:248858/100‑1 (MQ=255)
                                                    aGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTAc                                           <  2:1279847/100‑1 (MQ=255)
                                                    aGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTAc                                           <  2:284380/100‑1 (MQ=255)
                                                    aGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTAc                                           <  1:467620/100‑1 (MQ=255)
                                                    aGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGGCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTAc                                           <  1:1296178/100‑1 (MQ=255)
                                                      cACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACAt                                         >  1:34715/1‑100 (MQ=255)
                                                        cTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGc                                       <  1:1402886/100‑1 (MQ=255)
                                                        cTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGc                                       >  1:1605861/1‑100 (MQ=255)
                                                        cTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGc                                       <  1:1403004/100‑1 (MQ=255)
                                                         tGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCa                                      >  1:942234/1‑100 (MQ=255)
                                                         tGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCa                                      >  1:2913161/1‑100 (MQ=255)
                                                          ggAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCa                                      <  2:2581370/99‑1 (MQ=255)
                                                          ggAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCAc                                     >  1:3034612/1‑100 (MQ=255)
                                                           gAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCAct                                    >  1:909369/1‑100 (MQ=255)
                                                           gAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCAc                                     <  1:775609/99‑1 (MQ=255)
                                                              aaaCAGTGTCTTGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCActgcc                                 <  1:2383561/100‑1 (MQ=255)
                                                                aCAGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCActgcctg                               <  2:22429/100‑1 (MQ=255)
                                                                aCAGTGTCTGGCACAGAACGCGCAACACAAAGACTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCActgcctg                               <  1:638528/100‑1 (MQ=255)
                                                                aCAGTGACTTTCACAGAACGCTCAACACAAAGACTGGCAGTGTACTGAAGAGATGCTGGAACCGATCCGTGATCGAGCCGCCCTGTCAATGGActgcctg                               <  2:2853213/100‑1 (MQ=255)
                                                                  aGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACtgcctgcc                             <  2:1806070/100‑1 (MQ=255)
                                                                  aGTGTCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACtgcctgcc                             <  2:1470195/100‑1 (MQ=255)
                                                                   gtgtCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCa                            <  2:1961779/100‑1 (MQ=255)
                                                                    tgtCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAg                           <  1:1665800/100‑1 (MQ=255)
                                                                    tgtCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAg                           <  1:2339951/100‑1 (MQ=255)
                                                                      tCTGGCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCt                         >  2:735251/1‑100 (MQ=255)
                                                                       cTGGCACAGAACGCGCAACACAAAGACTGGAAGTGTACTGAAGAGATAATGGAACTGCCCCGTGGTGGCGAAGCCATGTACTTGCATTGCCTGCCAGCTg                        <  2:1242114/100‑1 (MQ=255)
                                                                         ggCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGat                      >  2:2601392/1‑100 (MQ=255)
                                                                          gCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGata                     >  1:2861714/1‑100 (MQ=255)
                                                                          gCACAGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGata                     >  1:3584/1‑100 (MQ=255)
                                                                           cacaGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGatat                    <  2:2574694/100‑1 (MQ=255)
                                                                           cacaGAACGCGCAACACAAAGTCTGCCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCAAAGCCCTGTACATGCACTGCCTGCCAGCTGctat                    >  2:1433861/1‑100 (MQ=255)
                                                                            acaGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATc                   <  2:2304977/100‑1 (MQ=255)
                                                                            acaGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATc                   <  2:2816725/100‑1 (MQ=255)
                                                                              aGAACGCGCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAg                 <  1:806414/100‑1 (MQ=255)
                                                                                 aCGCGCAACACAACGTCTGGCATTGTACTGAAGCGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAgcg               >  2:2886390/1‑99 (MQ=255)
                                                                                  cgcgCAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAgcggc             >  1:1630754/1‑100 (MQ=255)
                                                                                   gcgcAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAgcggcg            <  1:791304/100‑1 (MQ=255)
                                                                                   gcgcAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAgcggcg            <  1:2823787/100‑1 (MQ=255)
                                                                                    cgcAACACAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGt           >  1:696865/1‑100 (MQ=255)
                                                                                       aaCACAAAGACTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATc        >  2:2995455/1‑100 (MQ=255)
                                                                                        acacAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATcc       >  2:1335066/1‑100 (MQ=255)
                                                                                        acacAAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATcc       >  1:877255/1‑100 (MQ=255)
                                                                                         cacaAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCt      <  1:1955824/100‑1 (MQ=255)
                                                                                         cacaAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCt      >  2:1831836/1‑100 (MQ=255)
                                                                                          acaAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTg     <  2:1312808/100‑1 (MQ=255)
                                                                                          acaAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTg     <  2:1673143/100‑1 (MQ=255)
                                                                                           caAAGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGt    >  2:938060/1‑100 (MQ=255)
                                                                                             aaGTCTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTaa  >  1:627162/1‑100 (MQ=255)
                                                                                                |                                                                                                
TGATGGAAGAGCGTACTGAATTGCTGCGTGCGAACGATCACGAAGGCTTAAAAGCACTGGAAAAACAGTGTCTGGCACAGAACGCGCAACACAAAGACTGGCATTGTACTGAAGAGATGATGGAACTGACCCGTGATGGCGAAGCCCTGTACATGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAA  >  NC_000913/3007091‑3007283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A