Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F255 I1 R1
|
77 |
120.7 |
6116409 |
93.2% |
5700493 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,525,826 |
(A)6→7 |
coding (324/561 nt) |
nudE ← |
adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,525,820 | 1 | . | A | 91.2%
| 366.7
/ 26.7
| 114 | coding (330/561 nt) | nudE | adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| Reads supporting (aligned to +/- strand): ref base . (6/4); new base A (52/52); total (58/56) |
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
CTCTGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTT > NC_000913/3525721‑3525914
|
ctctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑Cttctt‑c > 2:1808205/1‑100 (MQ=255)
ctctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑Cttctt‑c > 1:767928/1‑100 (MQ=255)
tctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑a < 1:2632180/100‑1 (MQ=255)
tctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑a > 1:1363692/1‑100 (MQ=255)
tctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑a < 1:1633354/100‑1 (MQ=255)
ctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aa > 2:2457816/1‑100 (MQ=255)
ctGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aa > 2:612594/1‑100 (MQ=255)
tGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa > 1:581964/1‑100 (MQ=255)
ggCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑a > 2:1142186/1‑100 (MQ=255)
ntCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGGTATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CCTCTT‑C‑aaa‑aa‑a > 1:1137460/2‑100 (MQ=255)
cTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑aa‑a > 2:2293059/1‑100 (MQ=255)
cTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCGGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑aa‑a > 2:561103/1‑100 (MQ=255)
cATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑aa‑aag < 2:1226705/100‑3 (MQ=255)
aTCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑aa‑aagt > 2:514021/1‑97 (MQ=255)
tCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑aaa‑aa‑aagtc > 2:1665789/1‑96 (MQ=255)
ccTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGa > 1:1159801/1‑100 (MQ=255)
cTTCCAGTGATTCCGGGTAGAGATCTTGCGATAACACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAAGAA‑A‑GTCAGAt > 2:2008406/1‑100 (MQ=255)
ccAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGt > 2:1343815/1‑100 (MQ=255)
aGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTc > 1:684618/1‑100 (MQ=255)
aGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTc < 2:2678342/100‑1 (MQ=255)
gTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCg > 2:1512546/1‑100 (MQ=255)
aTTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTc < 2:2661206/100‑1 (MQ=255)
aTTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTc > 1:759551/1‑100 (MQ=255)
ttCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTcc > 1:2755313/1‑100 (MQ=255)
ccGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCaa > 1:1349077/1‑100 (MQ=255)
gggTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAAt < 1:2378662/100‑1 (MQ=255)
gTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATcc < 1:1215295/100‑1 (MQ=255)
tAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCa > 2:592610/1‑100 (MQ=255)
agagATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑TAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCaa < 1:2898176/100‑1 (MQ=255)
agagATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAc > 1:2745540/1‑100 (MQ=255)
gagaTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAc > 2:1992188/1‑100 (MQ=255)
gagaTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAc < 1:1969538/100‑1 (MQ=255)
gagaTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAc > 1:1577330/1‑100 (MQ=255)
agagCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAcc < 2:32735/100‑1 (MQ=255)
agaTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAcc < 1:2046555/100‑1 (MQ=255)
agaTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAAcc > 1:2889291/1‑100 (MQ=255)
tGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGATGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCtcttct < 2:1663217/100‑1 (MQ=255)
tGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCtcttct > 2:865870/1‑100 (MQ=255)
cgcTACCACGATATTCATTTTGTTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCttt > 1:2613958/1‑100 (MQ=255)
cgcTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCttt < 1:2293088/100‑1 (MQ=255)
cgcTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCttt < 2:1308906/100‑1 (MQ=255)
cgcTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCttt < 2:56774/100‑1 (MQ=255)
cgcTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCtttt < 2:2097463/100‑1 (MQ=255)
gttaaaaCGATATTCATTTAGCTGGAAAAGTAAGACGGTGCCATGTTAAAAAAAAAA‑A‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCtttt < 2:1298042/94‑1 (MQ=255)
cTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTa < 2:1872866/100‑1 (MQ=255)
aCCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGc > 1:1961422/1‑100 (MQ=255)
aCCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑AGGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGc < 2:2010277/100‑1 (MQ=255)
ccACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCt > 1:1519162/1‑100 (MQ=255)
ccACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCt < 2:207862/100‑1 (MQ=255)
ccACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCt > 2:2321210/1‑100 (MQ=255)
ccACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCt > 2:2935993/1‑100 (MQ=255)
aCGATATTCATTTTGCTGGAAAAGTCAGACGGTGCAATGCTGAG‑CTTCTTCC‑AAA‑AA‑A‑GTCAGATAGTTCGTTCCCCATCCAACCTCTTCttttcg > 2:567789/1‑94 (MQ=255)
aCGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTcg > 2:373808/1‑100 (MQ=255)
cGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCGACCTCTTCTTTTAGCTcgc < 1:561110/100‑1 (MQ=255)
cGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTcgc > 1:164901/1‑100 (MQ=255)
atatTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCgg < 1:1170085/100‑1 (MQ=255)
tatTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGt > 2:1213258/1‑100 (MQ=255)
tatTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGt < 2:1748162/100‑1 (MQ=255)
tatTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGt > 1:2983541/1‑100 (MQ=255)
tatTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGt < 2:1520030/100‑1 (MQ=255)
atTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGtt < 2:790993/100‑1 (MQ=255)
ttCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTa > 2:1012784/1‑100 (MQ=255)
tCATTTTGCGGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAg < 1:1234207/100‑1 (MQ=255)
cATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGc < 2:843820/100‑1 (MQ=255)
aTTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCg > 1:837356/1‑100 (MQ=255)
tgtGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGc > 1:2064457/3‑100 (MQ=255)
tGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCtt > 1:2919989/1‑100 (MQ=255)
gCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTc < 1:2219048/100‑1 (MQ=255)
ccggAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCg < 1:2572355/98‑1 (MQ=255)
cTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCg > 2:879158/1‑100 (MQ=255)
cTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCg < 1:2518430/100‑1 (MQ=255)
tGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGt > 1:1466084/1‑100 (MQ=255)
tGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGt < 1:627659/100‑1 (MQ=255)
aaaaGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCGCTTCTTTTAGCTCGCGGTTAGCgtctacgaagc < 2:2001999/100‑11 (MQ=255)
aaaaGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGTCtacgaagcc > 2:652791/1‑92 (MQ=255)
aaaGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGAc < 1:2180197/100‑1 (MQ=255)
aaaGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGAc < 2:1073938/100‑1 (MQ=255)
aaaGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGAc > 1:3013580/1‑100 (MQ=255)
aGTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGc > 1:2616140/1‑100 (MQ=255)
gTAAGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCt > 1:84130/1‑100 (MQ=255)
aaGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCttt > 2:1721847/1‑100 (MQ=255)
aGACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTc < 1:1137915/100‑1 (MQ=255)
gACGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCa < 1:2689963/100‑1 (MQ=255)
cGGTGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCAcc > 1:2203931/1‑100 (MQ=255)
tGCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCgg > 1:351306/1‑100 (MQ=255)
gCCATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGa > 1:2439751/1‑100 (MQ=255)
ccATGCTGAG‑CTCCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCACATCCAACCACTACTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTCTCAACCGGa > 2:830524/1‑99 (MQ=255)
cATGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATc < 1:181131/100‑1 (MQ=255)
cATGCTGAG‑CTTCTT‑C‑AAA‑AAGA‑GTCAGATCGTTCGCTCCAAATCCAACCTCTGCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATc < 2:556237/100‑1 (MQ=255)
aTGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCa < 2:1504620/100‑1 (MQ=255)
aTGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCa > 1:153163/1‑100 (MQ=255)
aTGCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCa > 2:1093976/1‑100 (MQ=255)
gCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAAt > 1:3019734/1‑100 (MQ=255)
gCTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAAt > 2:2278276/1‑100 (MQ=255)
cTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAAtt < 1:35457/100‑1 (MQ=255)
cTGAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAAtt < 2:3019693/100‑1 (MQ=255)
gAG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTaa < 2:2559822/100‑1 (MQ=255)
aG‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAAt < 2:178352/100‑1 (MQ=255)
g‑CTTCTT‑CAAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATc < 2:2528269/100‑1 (MQ=255)
tctt‑caAAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCtt < 1:205045/100‑1 (MQ=255)
|
CTCTGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAG‑CTTCTT‑C‑AAA‑AA‑A‑GTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTT > NC_000913/3525721‑3525914
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
