Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F258 I1 R1 132 116.1 5785507 94.2% 5449947 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,101,039 (C)7→6 coding (585/720 nt) yggN ← DUF2884 family putative periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,101,0330C.96.2% 335.1 / 7.7 81coding (591/720 nt)yggNDUF2884 family putative periplasmic protein
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base . (41/36);  total (44/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01

CTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCC  >  NC_000913/3100939‑3101128
                                                                                              |                                                                                               
cTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGcccccc                                                                                            >  2:806808/1‑100 (MQ=255)
 ttCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGcccccca                                                                                           >  1:1232995/1‑99 (MQ=255)
 ttCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGcccccca                                                                                           >  2:2188600/1‑99 (MQ=255)
  tCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGccccccag                                                                                          >  2:57358/1‑98 (MQ=255)
   ccAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGccccccagg                                                                                         <  1:2119186/100‑4 (MQ=255)
   ccAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGccccccagg                                                                                         <  2:415781/100‑4 (MQ=255)
   ccAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGccccccagg                                                                                         <  2:781100/100‑4 (MQ=255)
       agTCACAACGCGGCTACAAACATCTTTGCCAAACTGGTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTc                                                                                    <  1:2025347/100‑1 (MQ=255)
        gTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTcc                                                                                   >  1:1107902/1‑100 (MQ=255)
         tCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTccc                                                                                  >  2:2844128/1‑100 (MQ=255)
         tCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTccc                                                                                  <  2:2091604/100‑1 (MQ=255)
          cacaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCa                                                                                 >  2:1315841/1‑100 (MQ=255)
             aaCGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGca                                                                              <  1:1931624/100‑1 (MQ=255)
              aCGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGcac                                                                             <  2:2089242/100‑1 (MQ=255)
                gcgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACAt                                                                           >  2:1143825/1‑100 (MQ=255)
                  ggCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTc                                                                         >  1:1839392/1‑100 (MQ=255)
                  ggCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTc                                                                         <  1:2150922/100‑1 (MQ=255)
                   gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCt                                                                        <  1:2787673/100‑1 (MQ=255)
                   gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCt                                                                        <  1:2770968/100‑1 (MQ=255)
                   gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCCGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCt                                                                        >  2:364779/1‑100 (MQ=255)
                     tACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGt                                                                      >  1:2833045/1‑100 (MQ=255)
                     tACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGt                                                                      >  2:534826/1‑100 (MQ=255)
                     tACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGt                                                                      <  1:1103047/100‑1 (MQ=255)
                     tACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATCGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGt                                                                      <  2:1778070/100‑1 (MQ=255)
                      aCAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTa                                                                     <  1:1018093/100‑1 (MQ=255)
                       cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTaa                                                                    >  1:2159674/1‑100 (MQ=255)
                       cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTaa                                                                    >  1:101245/1‑100 (MQ=255)
                         aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATg                                                                  >  1:2153921/1‑100 (MQ=255)
                         aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATg                                                                  >  2:788734/1‑100 (MQ=255)
                         aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATg                                                                  <  2:1633791/100‑1 (MQ=255)
                          aCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATgg                                                                 <  1:2095779/100‑1 (MQ=255)
                           cATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTTTTTTTTTTTTTTTTTGAGGATTGC‑GGCCGCTCAGGCTTTCCAGCACATTCTGTAAt                                                                   >  2:1800208/1‑97 (MQ=255)
                           cATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATggg                                                                <  1:806809/100‑1 (MQ=255)
                           cATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATggg                                                                <  2:2059794/100‑1 (MQ=255)
                            aTCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGt                                                               <  1:1464233/100‑1 (MQ=255)
                             tCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGtt                                                              >  1:673790/1‑100 (MQ=255)
                               tttGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAc                                                            >  1:229939/1‑100 (MQ=255)
                                   ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgcc                                                        <  1:1826494/100‑1 (MQ=255)
                                    cAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                       <  1:2225803/100‑1 (MQ=255)
                                     aaaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                       >  1:1499101/1‑99 (MQ=255)
                                     aaaCTGCTGGAAATCTTTTTCCTGCTTTTTCAACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACcgccgc                                                      >  1:1413201/1‑100 (MQ=255)
                                        ctgctgGAAATCTTTTTCCTGCTTTTTTTTTTTGGTTTGGATTGAGGATTGCAG‑CCTCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCttt                                                   >  2:212892/1‑100 (MQ=255)
                                        ctgctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCttt                                                   <  1:1889217/100‑1 (MQ=255)
                                          gctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTc                                                 <  1:2318557/100‑1 (MQ=255)
                                           ctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCa                                                >  2:2726383/1‑100 (MQ=255)
                                            tgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAg                                               <  1:378852/100‑1 (MQ=255)
                                             ggAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                              >  1:396946/1‑100 (MQ=255)
                                             ggAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                              <  2:276479/100‑1 (MQ=255)
                                             ggAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                              <  1:171608/100‑1 (MQ=255)
                                             ggAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                              >  2:2440598/1‑100 (MQ=255)
                                              gAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                              >  1:1867353/1‑100 (MQ=255)
                                               aaaTCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAc                                            >  1:2741967/1‑100 (MQ=255)
                                                   cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCt                                        <  1:1479979/100‑1 (MQ=255)
                                                   cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCt                                        >  2:2270062/1‑100 (MQ=255)
                                                       ttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcg                                    <  2:189055/100‑1 (MQ=255)
                                                       ttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcg                                    >  1:176764/1‑100 (MQ=255)
                                                          cTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCgcgc                                 >  2:2488850/1‑100 (MQ=255)
                                                          cTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCgcgc                                 <  1:378548/100‑1 (MQ=255)
                                                            gCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGccc                               >  1:2104224/1‑100 (MQ=255)
                                                            gCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGccc                               >  2:1866888/1‑100 (MQ=255)
                                                            gCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGccc                               >  2:1867017/1‑100 (MQ=255)
                                                             cTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCa                              <  1:876183/100‑1 (MQ=255)
                                                               ttttCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAtt                            >  1:1143915/1‑100 (MQ=255)
                                                                tttCCACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAttt                           >  2:67743/1‑100 (MQ=255)
                                                                   tcACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAt                        <  2:1570607/99‑1 (MQ=255)
                                                                    cACTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAta                       >  1:1570616/1‑99 (MQ=255)
                                                                     aCTCGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTa                      >  2:2365268/1‑100 (MQ=255)
                                                                        cGGTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                   <  2:2741946/100‑1 (MQ=255)
                                                                          gTTTGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCt                 >  2:2827801/1‑100 (MQ=255)
                                                                           tttGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCt                 >  2:1427116/1‑100 (MQ=255)
                                                                           tttGGATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg                <  2:919213/100‑1 (MQ=255)
                                                                            ttGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg                <  1:1867609/100‑1 (MQ=255)
                                                                             tGGATTGAGGATTGCAG‑TCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTc              <  2:2234282/100‑1 (MQ=255)
                                                                              ggATTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTcc             <  1:534828/100‑1 (MQ=255)
                                                                                aTTGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTg           <  1:1335597/100‑1 (MQ=255)
                                                                                  tgatggttGCAG‑CCTCCCAGGCTTCCCAGCACACTCTGTAATGGGTTTTCGCCGCTTTTCGTCACCGCTTTCGCGCCCATTTCATTGATGCTGTCCTGTa         <  2:1781840/94‑1 (MQ=255)
                                                                                  tGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTa         <  2:361882/100‑1 (MQ=255)
                                                                                  tGAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTa         >  2:746729/1‑100 (MQ=255)
                                                                                   gAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa        >  1:2263750/1‑100 (MQ=255)
                                                                                   gAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa        >  2:780492/1‑100 (MQ=255)
                                                                                   gAGGATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa        >  2:1152045/1‑100 (MQ=255)
                                                                                     ggATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaaaa      >  1:2837421/1‑100 (MQ=255)
                                                                                     ggATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaaaa      >  2:1473720/1‑100 (MQ=255)
                                                                                     ggATTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaaaa      >  2:1845036/1‑100 (MQ=255)
                                                                                       aTTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAAtt    <  1:1857786/100‑1 (MQ=255)
                                                                                       aTTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAAtt    >  2:11278/1‑100 (MQ=255)
                                                                                       aTTGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAAtt    <  2:2335563/100‑1 (MQ=255)
                                                                                         tGCAG‑CCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTcc  >  1:205206/1‑100 (MQ=255)
                                                                                              |                                                                                               
CTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCC  >  NC_000913/3100939‑3101128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A