Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F191 I0 R1	105	142.7	6924153	96.8%	6702580	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,298,809	A→G	65.4%	V13A (GTG→GCG)	yraR ←	putative nucleoside‑diphosphate‑sugar epimerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,298,809	0	A	G	65.4%	149.0 / 121.0	133	V13A (GTG→GCG)	yraR	putative nucleoside‑diphosphate‑sugar epimerase
Reads supporting (aligned to +/- strand): ref base A (19/27); new base G (36/50); total (55/78)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

Only 100 of 145 total aligned reads displayed.

TAAACACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGA  >  NC_000913/3298711‑3298908

tAAACACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCccac                                                                                                    <  2:2212165/100‑1 (MQ=255)

 aaaCACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGTGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACcgcccgcc                                                                                                   >  2:1163357/1‑100 (MQ=255)

 aaaCACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCCACATCCGCAGGAGGTGACCGCccac                                                                                                    >  1:656662/1‑99 (MQ=255)

 aaaCACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCccacc                                                                                                   <  1:2468659/100‑1 (MQ=255)

  aaCACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCccgcca                                                                                                  >  2:542564/1‑100 (MQ=255)

   acacCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAg                                                                                                 >  2:1587190/1‑100 (MQ=255)

     acCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCTTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGcc                                                                                               <  1:1852204/100‑1 (MQ=255)

     acCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGcc                                                                                               >  2:616244/1‑100 (MQ=255)

      ccccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGccc                                                                                              >  2:1514020/1‑100 (MQ=255)

       cccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGcccc                                                                                             >  2:1802525/1‑100 (MQ=255)

       cccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGcccc                                                                                             >  2:959184/1‑100 (MQ=255)

        ccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCg                                                                                            <  1:602878/100‑1 (MQ=255)

         cGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGt                                                                                           <  2:324405/100‑1 (MQ=255)

         cGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGt                                                                                           >  2:2401157/1‑100 (MQ=255)

         cGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGt                                                                                           >  2:344313/1‑100 (MQ=255)

           ggCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTg                                                                                         >  2:3266807/1‑100 (MQ=255)

             cATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTgcg                                                                                       >  1:1705563/1‑100 (MQ=255)

             cATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTAAACTTTCGGTTCGTTAATCGACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTgcg                                                                                       >  1:1892237/1‑100 (MQ=255)

               tatCGCCCAAGGGACGTCGCGTCGGGGCAGCAATGGCGTTAACTTTCGGGTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGcc                                                                                     <  2:1927601/100‑1 (MQ=255)

               tatCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGcc                                                                                     >  2:492707/1‑100 (MQ=255)

               tatCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGcc                                                                                     <  1:1115843/100‑1 (MQ=255)

                 tCGCCCAACGGACGTCGCGTCGGCGCAGCACTGGCGTTAACTTTCGGTTCGCTAATCAACATACGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTg                                                                                   >  1:3191668/1‑100 (MQ=255)

                  cGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTgn                                                                                  <  1:1087405/100‑2 (MQ=255)

                   gCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTa                                                                                 >  2:3172650/1‑100 (MQ=255)

                     ccAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAAt                                                                               <  1:4713/100‑1 (MQ=255)

                      cAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATc                                                                              <  2:2686104/100‑1 (MQ=255)

                      cAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATc                                                                              <  2:1340694/100‑1 (MQ=255)

                      cAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATc                                                                              <  2:2513303/100‑1 (MQ=255)

                      cAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATc                                                                              >  2:2703130/1‑100 (MQ=255)

                      cAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTCGCGCCTGTAATc                                                                              <  2:1585060/100‑1 (MQ=255)

                      cAACGGACGCCGCGTCGGCGCAGCAATGGCGTTAAAGTGCGTTCCGTTAATCTACATCCGCAGCAGGTGGCCGCCTGCACGCCACGTTGCGCCTGTa                                                                                 >  1:2621528/1‑97 (MQ=255)

                       aaCGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCa                                                                             >  1:504491/1‑100 (MQ=255)

                       aaCGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCa                                                                             >  2:658736/1‑100 (MQ=255)

                         cGGACGTCGCTTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGCCCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGt                                                                           <  1:2267481/100‑1 (MQ=255)

                            aCGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTAcc                                                                        <  2:484191/100‑1 (MQ=255)

                             cgtcgcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCt                                                                       <  2:1521586/100‑1 (MQ=255)

                              gtcgcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTg                                                                      >  2:265019/1‑100 (MQ=255)

                              gtcgcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTg                                                                      <  1:998889/100‑1 (MQ=255)

                               tcgcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGa                                                                     >  1:2390015/1‑100 (MQ=255)

                                  cgtcgcccaagcaATGGCGTTAACTGTCGGTTCGTTAATCAACATCCACAGCAGGTGACCGCCCTCCAGCCCCGTTTCACCTGTAATCAGTACCt                                                                       <  1:3349748/86‑1 (MQ=255)

                                  cgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTc                                                                  >  1:831122/1‑100 (MQ=255)

                                       gcgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCtt                                                             <  1:1369037/100‑1 (MQ=255)

                                       gcgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCtt                                                             <  1:2715463/100‑1 (MQ=255)

                                        cgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACGCATCTTc                                                            >  1:2586298/1‑100 (MQ=255)

                                        cgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTc                                                            >  2:2314468/1‑100 (MQ=255)

                                        cgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTc                                                            >  2:2319495/1‑100 (MQ=255)

                                          cagcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGc                                                          >  2:1091507/1‑100 (MQ=255)

                                          cagcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGc                                                          >  2:112356/1‑100 (MQ=255)

                                            gcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTc                                                        >  1:546340/1‑100 (MQ=255)

                                            gcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTc                                                        <  1:2836165/100‑1 (MQ=255)

                                             caATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTcc                                                       <  2:626125/100‑1 (MQ=255)

                                              aaTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCt                                                      >  1:2236747/1‑100 (MQ=255)

                                               aTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCtt                                                     <  1:959177/100‑1 (MQ=255)

                                               aTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCtt                                                     <  1:2808321/100‑1 (MQ=255)

                                               aTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCtt                                                     >  2:2989308/1‑100 (MQ=255)

                                                tGGCGTTAACTTTCGGTTCGTTAATCAACCTCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCTTGTAATCAGTACCTGACTCATCTTCGCTCCttt                                                    <  1:2074945/100‑1 (MQ=255)

                                                    gTTAACTTTCGGTTCGTTAATCAACAGCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAg                                                >  2:2107565/1‑100 (MQ=255)

                                                         cTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTg                                           >  1:2984604/1‑100 (MQ=255)

                                                         cTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTg                                           >  2:3387926/1‑100 (MQ=255)

                                                         cTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGaa                                              >  1:528042/1‑97 (MQ=255)

                                                            tCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCt                                        <  2:220651/100‑1 (MQ=255)

                                                            tCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCt                                        >  2:260273/1‑100 (MQ=255)

                                                             cGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTg                                       <  2:664605/100‑1 (MQ=255)

                                                             cGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTg                                       <  1:1951584/100‑1 (MQ=255)

                                                              ggTTCGTTAATCAACATCCGTAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGc                                      <  2:2861360/100‑1 (MQ=255)

                                                              ggTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGc                                      <  2:1195810/100‑1 (MQ=255)

                                                              ggTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGc                                      >  2:2242656/1‑100 (MQ=255)

                                                                ttCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCt                                    <  1:2720102/100‑1 (MQ=255)

                                                                  cGTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTTCCtt                                   >  1:2906750/1‑99 (MQ=255)

                                                                  cGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTg                                  >  2:2138541/1‑100 (MQ=255)

                                                                   gTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTgc                                 >  2:3370511/1‑100 (MQ=255)

                                                                   gTTAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTgc                                 >  1:815014/1‑100 (MQ=255)

                                                                   gTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTgc                                 <  2:1990941/100‑1 (MQ=255)

                                                                     tAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTgcgc                               <  1:1091498/100‑1 (MQ=255)

                                                                     tAATCAACATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTgcgc                               <  2:1888294/100‑1 (MQ=255)

                                                                      aaTCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCt                              <  1:245723/100‑1 (MQ=255)

                                                                       aTCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCGTGCGCTc                             >  1:1862800/1‑100 (MQ=255)

                                                                          aaCATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGACTTGAGCTCCAc                          >  1:905324/1‑100 (MQ=255)

                                                                          aaCATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCAc                          <  1:1441576/100‑1 (MQ=255)

                                                                            cATCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACgg                        <  1:126908/100‑1 (MQ=255)

                                                                             aTCCGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGc                       <  2:3172181/100‑1 (MQ=255)

                                                                             aTCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGc                       <  1:2319477/100‑1 (MQ=255)

                                                                                cGCAGCAGGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCa                    <  2:812495/100‑1 (MQ=255)

                                                                                 gcagcaGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCAt                   >  2:1138204/1‑100 (MQ=255)

                                                                                  cagcagGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATg                  >  2:2952509/1‑100 (MQ=255)

                                                                                   agcagGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGc                 <  1:260271/100‑1 (MQ=255)

                                                                                    gcagGTGACCGCCCGCCAGCCCCGTTTCGCCTGTAATCAGTACCCTACTCATCTTCTCTCCTTCACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                >  2:2373819/1‑100 (MQ=255)

                                                                                    gcagGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                >  2:537100/1‑100 (MQ=255)

                                                                                      agGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc              <  1:976238/100‑1 (MQ=255)

                                                                                      agGTGACCGCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc              <  1:1802509/100‑1 (MQ=255)

                                                                                      agGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc              >  1:653341/1‑100 (MQ=255)

                                                                                          gACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGc          <  1:201506/100‑1 (MQ=255)

                                                                                          gACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGc          <  1:117570/100‑1 (MQ=255)

                                                                                            ccGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCtt        >  1:647861/1‑100 (MQ=255)

                                                                                             cgcccgccAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTa       >  2:1465568/1‑100 (MQ=255)

                                                                                             cGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTa       <  2:2544694/100‑1 (MQ=255)

                                                                                              gCCCGCCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCAGCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTaa      <  1:2867794/100‑1 (MQ=255)

                                                                                              gCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTaa      >  2:175688/1‑100 (MQ=255)

                                                                                               cccACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAAt     <  1:1396308/100‑1 (MQ=255)

                                                                                                  accaGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGa  >  1:3032018/1‑100 (MQ=255)

TAAACACCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGA  >  NC_000913/3298711‑3298908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A