Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I0 R1
|
432 |
103.0 |
5191697 |
92.7% |
4812703 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,467,129 |
C→T |
84.1% |
E40K (GAA→AAA) |
treR ← |
trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,467,129 | 0 | C | T | 84.1%
| 219.6
/ 31.0
| 94 | E40K (GAA→AAA) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (10/5); new base T (44/35); total (54/40) |
| Fisher's exact test for biased strand distribution p-value = 5.72e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGA > NC_000913/4467034‑4467227
|
aCGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAaca < 2:1898870/100‑1 (MQ=255)
aCGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAaca > 1:1866104/1‑100 (MQ=255)
cGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAacac > 2:1015226/1‑100 (MQ=255)
ggTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACCCGc > 1:1634222/1‑100 (MQ=255)
ggTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGc > 2:498285/1‑100 (MQ=255)
gTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCt > 2:926321/1‑100 (MQ=255)
aaCAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTcg > 2:1869911/1‑100 (MQ=255)
aCAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTcgc < 2:862496/100‑1 (MQ=255)
aaTGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCACAGCGGGAAGGGGAAAATCCATACTGATTCATCACTGCTTTAACACGCTCACgg > 1:98666/1‑100 (MQ=255)
atgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCgg‑g < 2:1222116/100‑1 (MQ=255)
tgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGACGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑Gt > 1:538413/1‑100 (MQ=255)
gatgGCGCCCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTg > 2:1353043/1‑100 (MQ=255)
gatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTg > 1:922823/1‑100 (MQ=255)
gatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTg > 1:1688887/1‑100 (MQ=255)
tgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTg < 1:2175432/98‑1 (MQ=255)
ggCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGc < 1:1030418/100‑1 (MQ=255)
gCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCt < 2:314871/100‑1 (MQ=255)
cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAATGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑TTGAg < 1:2158212/97‑1 (MQ=255)
cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACTCTCGCGG‑GTGAGCTg > 2:2558950/1‑100 (MQ=255)
gACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGccag < 2:2129847/100‑4 (MQ=255)
aCCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGc < 2:1906543/100‑1 (MQ=255)
ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCt > 2:346564/1‑100 (MQ=255)
cTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCAc > 1:1538631/1‑100 (MQ=255)
tATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCAcgcc > 1:1717192/1‑100 (MQ=255)
tATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCCAGCTCAcccg < 1:1532041/100‑4 (MQ=255)
tATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCCAGCTCAcccg < 1:2104730/100‑4 (MQ=255)
aTCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCAcgccg < 2:222155/100‑1 (MQ=255)
tCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGGCGTGAGCCAGCTCAcccgc < 2:1473287/100‑5 (MQ=255)
gCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCtt > 2:883387/1‑100 (MQ=255)
gCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCtt > 2:1022608/1‑100 (MQ=255)
cTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCttt < 2:1523717/100‑1 (MQ=255)
ttGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCg < 1:32041/100‑1 (MQ=255)
tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGt < 2:2543061/100‑1 (MQ=255)
gCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGtt > 2:704053/1‑100 (MQ=255)
gCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGtt > 2:704043/1‑100 (MQ=255)
cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCCTCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTa > 1:1062853/1‑100 (MQ=255)
cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTa > 2:672431/1‑100 (MQ=255)
cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTa > 2:1619361/1‑100 (MQ=255)
cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTa > 1:497011/1‑100 (MQ=255)
ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCCCTTTCGttct > 1:2015594/1‑98 (MQ=255)
cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTAtt > 2:1167632/1‑100 (MQ=255)
cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGCGCTGGCTCACGCCGCTTTCGTTAtt > 1:2594454/1‑100 (MQ=255)
aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGTTTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTc < 1:160000/100‑1 (MQ=255)
aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTc < 1:500777/100‑1 (MQ=255)
aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTc < 1:808553/100‑1 (MQ=255)
aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTc < 1:1821992/100‑1 (MQ=255)
gCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAg < 2:1731496/100‑1 (MQ=255)
aGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCAcc > 2:904594/1‑100 (MQ=255)
cgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCg > 2:1153246/1‑100 (MQ=255)
gcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCgg > 2:2408057/1‑100 (MQ=255)
gcccgcCGAGCTGGAAGGGGAAGATGCATGCTCATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCAcc < 2:2345536/94‑1 (MQ=255)
gcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGa < 1:10502/100‑1 (MQ=255)
gcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGa < 1:926318/100‑1 (MQ=255)
cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc < 2:519570/100‑1 (MQ=255)
cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc > 2:2156538/1‑100 (MQ=255)
gagCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTg > 2:358321/1‑100 (MQ=255)
gagCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCAGCTTTCGTTATTCAGCACCCGGGAAACTg > 1:1560542/1‑100 (MQ=255)
agCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGt < 1:996523/100‑1 (MQ=255)
gCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTa < 2:708487/100‑1 (MQ=255)
gCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTa < 1:2372289/100‑1 (MQ=255)
cGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAg < 1:1831777/100‑1 (MQ=255)
gggAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGa > 2:1375726/1‑100 (MQ=255)
ggAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAt > 2:2451167/1‑100 (MQ=255)
ggAAGGGGAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAt > 2:2045520/1‑100 (MQ=255)
gggAAAATCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTccc < 2:1372678/100‑1 (MQ=255)
ctaaaaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTcccc < 2:123485/98‑1 (MQ=255)
aaaaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCag > 1:123484/1‑99 (MQ=255)
aaaaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAc > 1:284291/1‑100 (MQ=255)
aaaaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTCTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAc < 1:1590307/100‑1 (MQ=255)
aaaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcg > 2:2141947/1‑100 (MQ=255)
aaTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgc > 2:1284006/1‑100 (MQ=255)
aaccACGCTGATTAATCACTGCTTTAACACGCTCGCGG‑GTGACCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgcc > 2:1755411/3‑100 (MQ=255)
aTCCATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgcc > 2:2031694/1‑100 (MQ=255)
cATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCt < 1:1316543/100‑1 (MQ=255)
cATGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCt < 1:2558277/100‑1 (MQ=255)
aTGCTGATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCtt < 1:672428/100‑1 (MQ=255)
gCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGGAAATGTAGATTTCCCCACGCCGCTTa > 1:2495542/1‑99 (MQ=255)
gATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGACACTGTAGATTTCCCCACGCCGCTTAAgcg > 1:1123471/1‑100 (MQ=255)
gATTCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcg < 1:1641931/100‑1 (MQ=255)
ttCATCACTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcg > 1:1448523/1‑100 (MQ=255)
tcatcaCTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcgc < 2:782346/100‑1 (MQ=255)
tcatcaCTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcgc > 1:372456/1‑100 (MQ=255)
tcatcaCTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcgc < 1:693044/100‑1 (MQ=255)
catcaCTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGcgcgcg > 1:210178/1‑100 (MQ=255)
catcaCTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGcgcgcg < 1:306656/100‑1 (MQ=255)
atcaCTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGa > 1:1287104/1‑100 (MQ=255)
caCTGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGata > 1:2273893/1‑100 (MQ=255)
tGCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCt < 1:1534323/100‑1 (MQ=255)
gCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCtt > 1:1752466/1‑100 (MQ=255)
gCTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCtt > 2:1097955/1‑100 (MQ=255)
gCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCtt > 2:1560162/1‑100 (MQ=255)
gCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCtt > 2:2023083/1‑100 (MQ=255)
cTTTAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCttt > 2:2560844/1‑100 (MQ=255)
tCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGa > 1:1690793/1‑100 (MQ=255)
|
ACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGA > NC_000913/4467034‑4467227
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
