breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 11,127 C→G 15.8% S77T (AGT→ACT)  yaaW ← UPF0174 family protein
RA 49,855 T→G 28.7% D11E (GAT→GAG)  folA → dihydrofolate reductase
RA 55,620 A→G 79.0% M497T (ATG→ACG)  lptD ← LPS assembly OM complex LptDE, beta‑barrel component
RA 83,587 A→C 17.9% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 18.3% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 87,881 A→G 15.7% intergenic (+33/‑147) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 95,070 G→A 15.1% V141I (GTA→ATA)  murF → UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA 107,553 (T)9→8 100% intergenic (+79/‑152) lpxC → / → secM UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation
RA 120,154 Δ1 bp 19.6% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 20.6% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 146,293 A→C 15.3% N405H (AAC→CAC)  yadE → putative polysaccharide deacetylase lipoprotein
RA 160,864:1 (C)6→7 100% coding (623/705 nt) sfsA ← sugar fermentation stimulation protein A
RA 175,145 Δ1 bp 15.4% coding (39/1422 nt) clcA → H(+)/Cl(‑) exchange transporter
RA 175,150:1 +G 15.8% coding (44/1422 nt) clcA → H(+)/Cl(‑) exchange transporter
RA 207,483 A→C 17.9% V786V (GTA→GTC)  dnaE → DNA polymerase III alpha subunit
RA 207,486 G→T 16.9% M787I (ATG→ATT)  dnaE → DNA polymerase III alpha subunit
RA 217,030 C→T 15.3% intergenic (‑27/+27) yaeF ← / ← proS putative lipoprotein/prolyl‑tRNA synthetase
RA 217,037 A→T 15.9% intergenic (‑34/+20) yaeF ← / ← proS putative lipoprotein/prolyl‑tRNA synthetase
RA 217,044 A→G 15.7% intergenic (‑41/+13) yaeF ← / ← proS putative lipoprotein/prolyl‑tRNA synthetase
RA 220,255 Δ1 bp 100% coding (674/816 nt) metQ ← DL‑methionine transporter subunit
RA 236,569 C→T 100% A168V (GCC→GTC)  dnaQ → DNA polymerase III epsilon subunit
RA 252,589 G→C 19.4% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 252,594 G→C 17.9% W98C (TGG→TGC)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 254,223 A→T 18.3% intergenic (+21/+36) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA 254,228 A→T 17.5% intergenic (+26/+31) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA 254,233 A→T 17.3% intergenic (+31/+26) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA 254,238 A→T 16.1% intergenic (+36/+21) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 260,537 G→C 15.2% S50S (TCG→TCC)  proB → gamma‑glutamate kinase
RA 270,287:1 (A)7→8 100% pseudogene (10/258 nt) insN → pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related
RA 317,566 G→A 18.0% pseudogene (128/129 nt) ykgQ → pseudogene, putative dehydrogenase
RA 317,571 T→C 18.5% intergenic (+4/+155) ykgQ → / ← rclC pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein
JC 380,020 (G)10→7 100% intergenic (‑139/+47) frmR ← / ← yaiO regulator protein that represses frmRAB operon/outer membrane protein
RA 380,022:1 (G)10→11 100% intergenic (‑141/+47) frmR ← / ← yaiO regulator protein that represses frmRAB operon/outer membrane protein
RA 410,479 A→G 100% S112S (TCA→TCG)  mak → manno(fructo)kinase
RA 418,691 C→T 19.0% A268V (GCC→GTC)  phoR → sensory histidine kinase in two‑component regulatory system with PhoB
RA 420,149 Δ1 bp 100% coding (559/1320 nt) brnQ → branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val
RA 426,471 G→A 100% R112H (CGT→CAT)  tgt → tRNA‑guanine transglycosylase
RA 431,107 A→T 16.3% intergenic (+155/+22) yajD → / ← tsx HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K
RA 431,109 A→T 15.8% intergenic (+157/+20) yajD → / ← tsx HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K
RA 431,111 A→T 15.8% intergenic (+159/+18) yajD → / ← tsx HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K
RA 432,193:1 +G 100% intergenic (‑180/+119) tsx ← / ← yajI nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein
RA 434,614:1 (C)6→7 100% intergenic (+56/‑33) ribD → / → ribE fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase/riboflavin synthase beta chain
RA 435,390 T→A 16.7% L85Q (CTG→CAG)  nusB → transcription antitermination protein
RA 435,396 T→A 16.1% I87N (ATT→AAT)  nusB → transcription antitermination protein
RA 435,402 T→A 17.3% L89Q (CTG→CAG)  nusB → transcription antitermination protein
RA 467,839 T→C 74.8% V143A (GTC→GCC)  cof → thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase
RA 560,553 C→T 16.4% A286V (GCC→GTC)  sfmD → putative outer membrane export usher protein
RA 561,696:1 (G)6→7 100% coding (2000/2604 nt) sfmD → putative outer membrane export usher protein
RA 595,519 T→A 17.4% intergenic (‑76/‑81) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 595,520 T→A 16.7% intergenic (‑77/‑80) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 650,529 G→A 16.9% R85R (CGC→CGT)  citD ← citrate lyase, acyl carrier (gamma) subunit
RA 650,532 T→C 16.6% A84A (GCA→GCG)  citD ← citrate lyase, acyl carrier (gamma) subunit
RA 657,531 T→G 17.0% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 17.1% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,535 C→A 15.7% intergenic (+34/+20) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 681,694 A→G 16.8% intergenic (+31/+29) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,699 T→A 16.8% intergenic (+36/+24) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,700 T→A 16.8% intergenic (+37/+23) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,705 C→T 17.3% intergenic (+42/+18) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 691,390 G→C 16.7% A132G (GCC→GGC)  ybeX ← putative ion transport
RA 699,556 C→T 19.4% intergenic (‑379/+18) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 699,559 A→G 19.4% intergenic (‑382/+15) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 705,972:1 (T)9→10 100% intergenic (+82/‑121) nagE → / → glnS N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
RA 710,170 C→T 16.6% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 715,849 A→G 100% L146L (TTA→TTG)  ybfP → lipoprotein
RA 741,817 C→T 20.4% G247D (GGC→GAC)  dtpD ← dipeptide and tripeptide permease D
RA 745,091 T→A 15.8% C283* (TGT→TGA)  ybgK → putative allophanate hydrolase, subunit 2
RA 755,958 G→A 78.8% A18T (GCA→ACA)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 801,861 G→C 15.0% intergenic (+50/‑26) ybhH → / → ybhI putative PrpF family isomerase/putative DASS family tricarboxylate or dicarboxylate transporter
RA 860,151 A→G 18.4% intergenic (‑123/+23) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,154 A→T 20.5% intergenic (‑126/+20) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,157 C→T 18.5% intergenic (‑129/+17) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 887,392 T→A 16.9% intergenic (‑53/‑31) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 887,393 T→A 18.3% intergenic (‑54/‑30) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 889,028 T→C 17.6% L264L (CTA→CTG)  ybjL ← putative transporter
RA 953,802 A→G 100% V222A (GTA→GCA)  focA ← formate channel
RA 964,148 T→C 16.2% intergenic (+36/‑172) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,150 T→A 16.4% intergenic (+38/‑170) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,152 G→A 17.5% intergenic (+40/‑168) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 975,700 G→T 16.7% D27Y (GAC→TAC) ‡ mukE → chromosome condensin MukBEF, MukE localization factor
RA 975,701 A→C 16.7% D27A (GAC→GCC) ‡ mukE → chromosome condensin MukBEF, MukE localization factor
RA 993,254 A→G 15.6% intergenic (+20/+23) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,255 A→C 15.6% intergenic (+21/+22) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,258 G→T 15.9% intergenic (+24/+19) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,259 C→T 16.3% intergenic (+25/+18) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 1,004,160:1 (G)7→8 100% coding (214/711 nt) ycbF → putative periplasmic pilin chaperone
RA 1,004,741 T→G 16.2% intergenic (+84/‑27) ycbF → / → pyrD putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked
RA 1,018,249 G→C 15.7% S17R (AGC→AGG) ‡ ycbZ ← putative peptidase
RA 1,018,251 T→G 15.2% S17R (AGC→CGC) ‡ ycbZ ← putative peptidase
RA 1,018,254 C→A 15.1% D16Y (GAT→TAT)  ycbZ ← putative peptidase
RA 1,018,256 G→C 15.2% T15S (ACC→AGC)  ycbZ ← putative peptidase
RA 1,019,188 C→G 21.9% G289A (GGT→GCT)  ompA ← outer membrane protein A (3a;II*;G;d)
RA 1,048,429 C→T 16.7% W88* (TGG→TAG) ‡ gfcC ← putative O‑antigen capsule production periplasmic protein
RA 1,048,430 A→G 16.2% W88R (TGG→CGG) ‡ gfcC ← putative O‑antigen capsule production periplasmic protein
RA 1,053,516:1 (G)6→7 100% coding (2663/2745 nt) torS ← hybrid sensory histidine kinase in two‑component regulatory system with TorR
RA 1,074,945 T→G 15.6% N1313T (AAC→ACC)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,074,948 C→A 15.1% G1312V (GGT→GTT)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,079,293 (T)6→5 100% intergenic (‑411/‑12) putA ← / → putP fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter
RA 1,093,980 G→A 20.8% D369N (GAC→AAC)  ycdT → diguanylate cyclase, membrane‑anchored
RA 1,129,394 G→C 16.1% intergenic (+20/+20) murJ → / ← flgN putative lipid II flippase/export chaperone for FlgK and FlgL
RA 1,143,641 G→A 100% H243Y (CAT→TAT)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,148,639 A→G 59.1% Y340C (TAC→TGC)  plsX → putative phosphate acyltransferase
RA 1,168,850 T→C 77.9% intergenic (‑18/‑223) ycfQ ← / → bhsA repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein
RA 1,187,090 G→C 21.0% intergenic (+20/+29) pepT → / ← roxA peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA 1,187,091 T→A 21.0% intergenic (+21/+28) pepT → / ← roxA peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA 1,187,092 G→C 21.0% intergenic (+22/+27) pepT → / ← roxA peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA 1,196,408 A→T 20.7% intergenic (+35/+459) icd → / ← ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA 1,197,853 T→C 100% N129D (AAT→GAT)  ymfE ← e14 prophage; putative inner membrane protein
RA 1,226,832 T→G 21.9% F78C (TTT→TGT)  ycgJ → uncharacterized protein
RA 1,232,481 C→T 20.6% intergenic (+27/+19) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,232,484 A→G 21.2% intergenic (+30/+16) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,233,154 T→A 15.2% intergenic (‑124/+22) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,246,073 C→T 100% G435D (GGC→GAC)  treA ← periplasmic trehalase
RA 1,260,901 C→T 17.6% intergenic (‑98/+27) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,260,904 A→G 16.5% intergenic (‑101/+24) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,270,726 C→G 15.6% intergenic (‑381/+23) ldrC ← / ← chaA toxic polypeptide, small/calcium/sodium:proton antiporter
RA 1,287,820 G→A 56.9% R269C (CGC→TGC)  purU ← formyltetrahydrofolate hydrolase
RA 1,311,830 A→G 17.8% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 17.6% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,329,743 G→A 100% V138M (GTG→ATG)  sohB → inner membrane protein, S49 peptidase family protein
RA 1,344,033 A→G 16.8% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 16.7% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 16.5% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,346,794 A→G 69.5% intergenic (‑52/‑2) gmr ← / → ymiB cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of RNase II stability/uncharacterized protein
RA 1,370,026 T→A 15.5% intergenic (+23/‑190) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,370,029 T→A 16.5% intergenic (+26/‑187) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,386,750 C→G 16.1% L11V (CTC→GTC)  tyrR → aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
RA 1,408,537 A→T 17.6% E163V (GAG→GTG)  ydaN → putative Zn(II) transporter
RA 1,408,546 A→T 16.7% H166L (CAC→CTC)  ydaN → putative Zn(II) transporter
RA 1,441,833 G→C 16.1% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,835 A→T 16.3% intergenic (‑92/+19) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,837 G→C 16.0% intergenic (‑94/+17) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,489,197 C→T 100% D322D (GAC→GAT)  aldA → aldehyde dehydrogenase A, NAD‑linked
RA 1,498,892 A→T 18.1% intergenic (+17/‑46) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,894 C→G 18.0% intergenic (+19/‑44) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,896 A→T 18.4% intergenic (+21/‑42) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,530,490 T→C 18.8% intergenic (+86/‑96) ydcD → / → yncI putative immunity protein for RhsE/pseudogene
RA 1,530,499 A→C 20.4% intergenic (+95/‑87) ydcD → / → yncI putative immunity protein for RhsE/pseudogene
RA 1,530,505 G→A 19.0% intergenic (+101/‑81) ydcD → / → yncI putative immunity protein for RhsE/pseudogene
RA 1,543,754 T→C 84.6% T103A (ACG→GCG)  narU ← nitrate/nitrite transporter
RA 1,594,256 (C)8→7 100% pseudogene (3732/3861 nt) yneO ← pseudogene, AidA homolog
JC 1,597,236 Δ7 bp 25.8% pseudogene (746‑752/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,597,272 T→A 16.1% pseudogene (716/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,608,704 A→G 19.0% S107P (TCG→CCG)  yneE ← bestrophin family putative inner membrane protein
RA 1,608,707 C→T 18.7% D106N (GAT→AAT)  yneE ← bestrophin family putative inner membrane protein
RA 1,642,370 C→G 18.8% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 18.8% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,657,898 A→T 24.7% intergenic (+28/‑171) ynfD → / → ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA 1,657,901 A→T 24.5% intergenic (+31/‑168) ynfD → / → ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA 1,674,955 A→T 17.5% intergenic (+8/+17) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA 1,674,958 A→T 17.9% intergenic (+11/+14) tqsA → / ← pntB pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA 1,681,424 T→C 19.3% I150T (ATT→ACT)  folM → dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme
RA 1,685,197 T→C 16.3% K464K (AAA→AAG)  fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,689,817 C→A 22.4% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,819 A→T 20.8% intergenic (+68/‑33) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,821 T→G 20.0% intergenic (+70/‑31) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,698,281 A→G 100% V300V (GTT→GTC)  malI ← transcriptional repressor of Mal regulon
RA 1,721,377 G→A 18.2% G38G (GGG→GGA)  ydhJ → putative membrane fusion protein (MFP) of YdhJK efflux pump
RA 1,744,859 G→T 15.1% intergenic (+29/+12) mdtK → / ← ydhQ multidrug efflux system transporter/autotransporter adhesin‑related protein
RA 1,755,639 G→A 100% intergenic (‑498/‑59) ydhZ ← / → pykF uncharacterized protein/pyruvate kinase I
RA 1,757,688 T→A 15.2% intergenic (+31/+33) lpp → / ← ldtE murein lipoprotein/murein L,D‑transpeptidase
RA 1,764,701 G→A 15.5% intergenic (‑315/+233) sufA ← / ← ydiH Fe‑S cluster assembly protein/uncharacterized protein
RA 1,770,203 T→A 15.7% intergenic (+17/‑412) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,204 C→G 15.7% intergenic (+18/‑411) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,770,205 T→A 15.7% intergenic (+19/‑410) ydiK → / → ydiL UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein
RA 1,784,169 G→A 21.7% G380D (GGT→GAT)  fadK → short chain acyl‑CoA synthetase, anaerobic
RA 1,792,242:1 +A 15.5% intergenic (‑222/+25) ydiV ← / ← nlpC anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA 1,797,388 G→T 16.4% P186Q (CCG→CAG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,797,391 A→C 16.9% L185R (CTG→CGG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,806,042 (C)6→5 100% coding (42/759 nt) ydiY ← acid‑inducible putative outer membrane protein
RA 1,807,923 (T)6→5 100% coding (128/861 nt) yniA → fructosamine kinase family protein
RA 1,850,715 Δ1 bp 15.4% intergenic (+22/‑145) sppA → / → ansA protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1
RA 1,850,719:1 +T 16.0% intergenic (+26/‑141) sppA → / → ansA protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1
RA 1,865,682 G→C 15.1% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,868,250 A→G 100% Y448C (TAC→TGC)  yeaG → protein kinase, endogenous substrate unidentified; autokinase
RA 1,868,859 Δ1 bp 22.2% intergenic (+17/‑96) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,868,865:1 +G 21.3% intergenic (+23/‑90) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,871,271 A→G 18.7% Y296C (TAT→TGT)  yeaI → putative membrane‑anchored diguanylate cyclase
RA 1,883,027 C→G 16.4% intergenic (+30/‑161) dmlA → / → yeaV D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter
RA 1,890,495 G→A 19.0% A13V (GCA→GTA)  yeaY ← Slp family lipoprotein, RpoE‑regulated
RA 1,903,571 A→G 100% T164A (ACC→GCC)  manY → mannose‑specific enzyme IIC component of PTS
RA 1,904,592 C→A 17.5% T233N (ACT→AAT)  manZ → mannose‑specific enzyme IID component of PTS
RA 1,904,595 T→G 17.1% I234S (ATT→AGT)  manZ → mannose‑specific enzyme IID component of PTS
RA 1,925,932 (T)7→6 100% coding (493/657 nt) yobB → C‑N hydrolase family protein
RA 1,932,094 C→G 16.1% intergenic (+35/+21) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,095 T→A 15.7% intergenic (+36/+20) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,096 C→G 16.0% intergenic (+37/+19) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,965,088 C→T 17.2% V368V (GTG→GTA) ‡ flhB ← flagellin export apparatus, substrate specificity protein
RA 1,965,089 A→G 18.1% V368A (GTG→GCG) ‡ flhB ← flagellin export apparatus, substrate specificity protein
RA 1,977,227 T→A 15.1% intergenic (‑88/+39) motA ← / ← flhC proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
MC JC 1,978,503 Δ776 bp 100% insB1–insA insB1, insA
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein
RA 1,999,231 T→A 18.6% T84S (ACT→TCT)  dcyD ← D‑cysteine desulfhydrase, PLP‑dependent
RA 2,018,260 (A)8→7 100% coding (315/444 nt) fliJ → flagellar protein
RA 2,028,158 G→C 21.0% intergenic (‑141/+30) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,159 T→A 20.6% intergenic (‑142/+29) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,160 G→C 20.7% intergenic (‑143/+28) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,032,336 G→C 19.1% intergenic (‑19/+48) dcm ← / ← yedJ DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase
RA 2,065,747 (C)6→5 100% coding (18/546 nt) cobU ← cobinamide kinase and cobinamide phosphate guanylyltransferase
RA 2,079,004 G→C 18.1% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,081,688 A→T 16.3% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,172,350 A→T 16.6% L175Q (CTG→CAG)  gatD ← galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA 2,172,353 A→T 16.1% L174Q (CTG→CAG)  gatD ← galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,332 C→T 16.6% intergenic (‑128/+180) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,340 A→C 15.1% intergenic (‑136/+172) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,345 A→G 15.6% intergenic (‑141/+167) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,185,875:1 (G)7→8 100% intergenic (‑79/‑42) rcnR ← / → rcnA transcriptional repressor of rcnA/membrane protein conferring nickel and cobalt resistance
RA 2,286,139 A→T 20.8% intergenic (+3/‑72) yejM → / → proL essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA 2,286,142 T→A 21.5% intergenic (+6/‑69) yejM → / → proL essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA 2,286,145 A→T 19.2% intergenic (+9/‑66) yejM → / → proL essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA 2,288,561 (C)7→6 100% pseudogene (354/2525 nt) yejO ← pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,305,085 A→G 15.5% intergenic (+692/+23) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,086 C→G 16.1% intergenic (+693/+22) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,087 C→T 15.9% intergenic (+694/+21) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,311,616 C→T 15.1% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 15.3% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,323,275 T→A 15.5% intergenic (+24/‑172) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,323,280 A→G 16.0% intergenic (+29/‑167) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,323,283 G→C 16.2% intergenic (+32/‑164) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,323,286 C→T 16.5% intergenic (+35/‑161) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,323,291 T→A 16.2% intergenic (+40/‑156) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,364,995 T→G 18.8% intergenic (+16/+23) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,364,998 C→A 18.8% intergenic (+19/+20) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,390,012 Δ1 bp 15.3% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,016:1 +C 15.6% intergenic (+52/+32) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,407,899 G→T 15.1% Q113H (CAG→CAT)  alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,414,689 C→G 18.3% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,440,991 A→G 81.5% G205G (GGT→GGC)  fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,469,733 (T)8→7 100% coding (603/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
RA 2,470,410 (T)7→6 100% coding (1280/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
RA 2,474,878 T→C 16.9% intergenic (+22/‑106) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,474,881 G→A 16.1% intergenic (+25/‑103) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,516,689 T→C 100% T382A (ACG→GCG)  yfeA ← putative diguanylate cyclase
RA 2,519,222 T→G 17.7% intergenic (+17/+35) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,519,225 T→A 17.5% intergenic (+20/+32) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,519,228 C→A 17.1% intergenic (+23/+29) yfeD → / ← gltX DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA 2,533,408 (A)6→5 100% intergenic (+28/‑356) cysK → / → ptsH cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
RA 2,550,574 C→G 15.1% intergenic (‑29/+67) yfeX ← / ← yfeY porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein
RA 2,553,210 A→G 100% K287E (AAA→GAA)  amiA → N‑acetylmuramoyl‑l‑alanine amidase I
RA 2,581,762 G→A 15.2% A339V (GCC→GTC)  ypfG ← DUF1176 family protein
RA 2,581,765 T→C 15.3% D338G (GAC→GGC)  ypfG ← DUF1176 family protein
RA 2,589,125 T→C 15.1% F511L (TTT→CTT)  acrD → aminoglycoside/multidrug efflux system
RA 2,611,005:1 (C)5→6 100% coding (300/759 nt) hyfI → hydrogenase 4, Fe‑S subunit
RA 2,636,286 G→T 16.6% H357Q (CAC→CAA)  der ← GTPase; multicopy suppressor of ftsJ
RA 2,636,291 A→C 15.9% L356V (TTG→GTG)  der ← GTPase; multicopy suppressor of ftsJ
RA 2,652,855:1 (G)6→7 100% coding (362/846 nt) sseA → 3‑mercaptopyruvate sulfurtransferase
RA 2,653,367 G→A 15.3% intergenic (+28/+790) sseA → / ← sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
RA 2,653,372 T→C 15.2% intergenic (+33/+785) sseA → / ← sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
RA 2,673,783 G→A 15.6% intergenic (+15/+33) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,784 C→A 15.5% intergenic (+16/+32) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,791 A→C 15.2% intergenic (+23/+25) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,797 T→G 15.1% intergenic (+29/+19) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,798 T→C 15.1% intergenic (+30/+18) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,680,113 G→A 25.7% P878L (CCG→CTG)  yphG ← DUF4380 domain‑containing TPR repeat protein
RA 2,704,304 A→G 17.0% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 15.3% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 16.0% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,724,099 T→G 15.1% intergenic (+17/‑29) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,731,312 G→A 64.0% intergenic (‑155/+288) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,734,543 (C)8→7 100% coding (492/732 nt) yfiH ← UPF0124 family protein
RA 2,754,784:1 (A)8→9 100% intergenic (‑20/‑112) ratA ← / → smpB toxic UPF0083 family protein inhibitor of 70S ribosome formation/tmRNA‑binding trans‑translation protein
RA 2,760,118 G→A 45.3% W378* (TGG→TGA)  yfjI → CP4‑57 prophage; uncharacterized protein
RA 2,761,620 T→G 15.6% K641Q (AAG→CAG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
JC 2,765,463 (TATGGCAC)6→8 79.8% intergenic (‑310/+50) yfjL ← / ← yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein
RA 2,767,667 T→G 15.5% intergenic (+312/‑43) rnlB → / → yfjP CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
RA 2,767,670 C→A 15.2% intergenic (+315/‑40) rnlB → / → yfjP CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
RA 2,770,319 C→G 16.5% P206R (CCG→CGG)  yfjR → CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA 2,800,515 C→A 26.2% intergenic (+40/‑208) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,517 T→A 25.0% intergenic (+42/‑206) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,519 T→G 25.9% intergenic (+44/‑204) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,807,091 T→C 16.2% intergenic (+17/‑41) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,807,093 A→T 15.5% intergenic (+19/‑39) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,809,774:1 (T)7→8 100% coding (158/738 nt) ygaZ → putative L‑valine exporter, norvaline resistance protein
RA 2,814,174 T→A 22.4% intergenic (+20/+44) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,814,175 T→A 22.4% intergenic (+21/+43) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,856,257 G→C 15.9% L640L (CTG→CTC)  fhlA → formate hydrogenlyase transcriptional activator
RA 2,856,258 G→C 16.2% E641Q (GAG→CAG)  fhlA → formate hydrogenlyase transcriptional activator
RA 2,866,592:1 +C 100% coding (960/993 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 2,890,521 G→A 21.8% P460S (CCA→TCA)  cysJ ← sulfite reductase, alpha subunit, flavoprotein
RA 2,900,962 C→T 26.2% A124V (GCA→GTA)  yqcE → putative MFS transporter, inner membrane protein
RA 2,918,617 C→A 22.0% A257S (GCT→TCT)  gudD ← D‑glucarate dehydratase 1
RA 2,923,969 C→G 15.0% E49Q (GAG→CAG)  yqcC ← DUF446 family protein
RA 2,950,330 G→A 44.8% M363I (ATG→ATA)  argA → amino acid N‑acetyltransferase and inactive acetylglutamate kinase
RA 2,962,561 G→A 15.7% N68N (AAC→AAT) ‡ ppdC ← putative prepilin peptidase‑dependent protein
RA 2,962,562 T→C 16.0% N68S (AAC→AGC) ‡ ppdC ← putative prepilin peptidase‑dependent protein
RA 2,966,413 A→T 78.9% D674E (GAT→GAA)  ptsP ← PEP‑protein phosphotransferase enzyme I; GAF domain containing protein
RA 2,972,860 (T)7→6 100% coding (1003/1194 nt) lplT ← lysophospholipid transporter
RA 2,976,320 T→G 17.8% intergenic (‑306/‑279) aas ← / → galR fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase/galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 2,976,321 C→A 16.9% intergenic (‑307/‑278) aas ← / → galR fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase/galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 2,980,742 A→G 17.3% intergenic (‑107/+22) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,980,744 A→T 17.1% intergenic (‑109/+20) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,980,746 C→T 16.6% intergenic (‑111/+18) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,991,798 Δ1 bp 15.5% intergenic (+39/‑296) ygeG → / → ygeH SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator
RA 2,991,799 Δ1 bp 15.2% intergenic (+40/‑295) ygeG → / → ygeH SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator
RA 2,991,805:1 +T 15.0% intergenic (+46/‑289) ygeG → / → ygeH SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator
RA 2,991,805:2 +G 15.0% intergenic (+46/‑289) ygeG → / → ygeH SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator
RA 3,008,075 A→G 100% D189G (GAC→GGC)  ygeX → 2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,090,226 T→C 15.5% C158R (TGC→CGC)  yggI → Zn‑dependent metalloprotease‑related protein
RA 3,090,229 G→A 15.5% G159S (GGT→AGT)  yggI → Zn‑dependent metalloprotease‑related protein
RA 3,101,039 (C)7→6 100% coding (585/720 nt) yggN ← DUF2884 family putative periplasmic protein
RA 3,156,590 C→A 20.6% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 20.3% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,165,032 G→A 22.7% H314H (CAC→CAT)  parC ← DNA topoisomerase IV, subunit A
RA 3,167,075 T→C 19.1% D215G (GAT→GGT)  ygiS ← putative ABC transporter permease
RA 3,171,852 C→T 18.2% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 19.3% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 19.2% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 18.4% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,182,712 G→A 100% A55T (GCC→ACC)  zupT → zinc transporter
RA 3,183,345:1 +T 15.5% intergenic (+22/+468) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,183,350 Δ1 bp 15.4% intergenic (+27/+463) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,194,516 A→G 100% K551K (AAA→AAG)  yqiK → PHB family membrane protein, function unknown
RA 3,202,678 C→G 21.4% P263R (CCG→CGG)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,685 A→G 24.1% E265E (GAA→GAG)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,686 C→T 23.1% L266F (CTC→TTC)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,693 C→G 22.4% P268R (CCG→CGG)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,332,822 G→A 19.4% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 18.9% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,350,678 Δ1 bp 15.6% intergenic (‑219/+11) elbB ← / ← arcB isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
RA 3,350,682:1 +A 16.1% intergenic (‑223/+7) elbB ← / ← arcB isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
RA 3,352,673 T→C 100% E118G (GAA→GGA)  arcB ← aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
RA 3,379,266:1 (C)7→9 100% coding (732/1128 nt) zapE ← divisome ATPase
RA 3,411,299 T→C 100% V10A (GTA→GCA)  fis → global DNA‑binding transcriptional dual regulator
RA 3,427,068 Δ1 bp 100% intergenic (‑35/+8) alaU ← / ← ileU tRNA‑Ala/tRNA‑Ile
RA 3,439,588 G→C 16.0% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,467,120 A→G 46.8% intergenic (‑129/+40) bfd ← / ← chiA bacterioferritin‑associated ferredoxin/periplasmic endochitinase
RA 3,499,708 (C)5→4 100% intergenic (+93/‑202) yhfL → / → frlA small lipoprotein/putative fructoselysine transporter
RA 3,512,561 Δ1 bp 100% intergenic (‑217/+73) yhfZ ← / ← trpS putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase
RA 3,541,493 T→C 82.6% F363L (TTC→CTC)  feoB → ferrous iron transporter protein B and GTP‑binding protein; membrane protein
RA 3,542,093 G→A 100% V563M (GTG→ATG)  feoB → ferrous iron transporter protein B and GTP‑binding protein; membrane protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,580,930 (A)9→8 100% intergenic (‑125/‑208) yhhX ← / → yhhY putative oxidoreductase/aminoacyl nucleotide detoxifying acetyltransferase
MC JC 3,582,206 Δ1,222 bp 100% IS1‑mediated [yhhZ]–yrhA [yhhZ], yrhA
RA 3,595,315 (A)5→4 100% coding (166/1278 nt) livM ← branched‑chain amino acid ABC transporter permease
RA 3,639,343 T→A 15.1% intergenic (+202/+42) pitA → / ← uspB phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA 3,639,344 T→A 15.0% intergenic (+203/+41) pitA → / ← uspB phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA 3,645,196 G→A 59.0% intergenic (‑14/‑189) prlC ← / → rlmJ oligopeptidase A/23S rRNA m(6)A2030 methyltransferase, SAM‑dependent
RA 3,648,144 (T)7→6 100% intergenic (‑356/‑384) dinQ ← / → arsR UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor
RA 3,658,002 C→T 15.2% intergenic (+435/‑364) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,658,003 C→G 15.2% intergenic (+436/‑363) hdeD → / → gadE acid‑resistance membrane protein/gad regulon transcriptional activator
RA 3,696,226 C→T 18.9% intergenic (‑41/‑232) yhjR ← / → bcsE DUF2629 family protein/cellulose production protein
RA 3,705,970 G→A 25.3% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 25.4% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 34.0% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 33.8% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,710,703 G→A 17.6% intergenic (‑228/+96) eptB ← / ← yhjX KDO phosphoethanolamine transferase, Ca(2+)‑inducible/pyruvate‑inducible inner membrane protein, putative transporter
RA 3,710,708 T→C 16.2% intergenic (‑233/+91) eptB ← / ← yhjX KDO phosphoethanolamine transferase, Ca(2+)‑inducible/pyruvate‑inducible inner membrane protein, putative transporter
RA 3,756,562:1 +G 15.3% intergenic (‑51/+114) aldB ← / ← yiaY aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA 3,756,565 Δ1 bp 15.2% intergenic (‑54/+111) aldB ← / ← yiaY aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA 3,790,300 A→T 16.4% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 16.8% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,798,234 A→T 16.1% intergenic (+27/+5) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
RA 3,798,235 A→T 16.2% intergenic (+28/+4) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
RA 3,810,321 T→C 17.9% intergenic (+17/+22) coaD → / ← mutM pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase
RA 3,810,324 G→A 17.5% intergenic (+20/+19) coaD → / ← mutM pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase
JC 3,815,859 Δ82 bp 100% [rph]–[rph] [rph], [rph]
RA 3,832,188 A→T 16.1% intergenic (+22/+31) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,191 C→G 15.1% intergenic (+25/+28) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,888,213 Δ1 bp 16.5% intergenic (+21/‑222) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,219 T→A 18.2% intergenic (+27/‑216) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,225:1 +A 17.0% intergenic (+33/‑210) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,891,502 C→G 15.1% intergenic (+19/‑113) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,920,796 T→C 17.2% A31A (GCA→GCG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,920,809 G→A 19.1% P27L (CCG→CTG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,952,380 G→A 100% L60L (CTG→CTA)  ilvM → acetolactate synthase 2 small subunit
RA 3,952,569 C→T 100% A29V (GCG→GTG)  ilvE → branched‑chain amino acid aminotransferase
RA 3,953,432 C→T 15.5% intergenic (+19/‑46) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,433 A→G 15.5% intergenic (+20/‑45) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,436 C→T 15.7% intergenic (+23/‑42) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,437 A→G 15.5% intergenic (+24/‑41) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,972,673 A→C 15.1% E51A (GAG→GCG) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,972,674 G→T 15.7% E51D (GAG→GAT) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,973,096 Δ1 bp 15.3% coding (575/1068 nt) rffG → dTDP‑glucose 4,6‑dehydratase
RA 4,002,325 C→T 78.9% I300I (ATC→ATT)  corA → magnesium/nickel/cobalt transporter
RA 4,051,259 G→T 21.2% intergenic (‑494/‑88) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,051,262 A→C 20.0% intergenic (‑497/‑85) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,060,261 G→T 16.6% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 16.3% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,100,447 (T)6→5 100% coding (79/1035 nt) rhaT ← L‑rhamnose:proton symporter
RA 4,104,114 T→A 21.2% I288F (ATC→TTC)  cpxA ← sensory histidine kinase in two‑component regulatory system with CpxR
RA 4,115,214 C→T 19.3% K122K (AAG→AAA)  glpX ← fructose 1,6‑bisphosphatase II
RA 4,128,259 A→G 100% V46A (GTG→GCG)  metJ ← transcriptional repressor, S‑adenosylmethionine‑binding
RA 4,148,049 C→G 16.6% G90A (GGC→GCC)  yijO ← AraC family putative transcriptional activator
RA 4,177,171 T→A 16.8% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,177,172 T→A 15.8% intergenic (+44/‑186) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,214,964 A→G 100% I229V (ATT→GTT)  metA → homoserine O‑transsuccinylase
RA 4,261,358 T→A 16.6% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 16.6% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,265,670 T→G 17.6% F453V (TTT→GTT)  dnaB → replicative DNA helicase
RA 4,265,675 C→A 17.9% N454K (AAC→AAA)  dnaB → replicative DNA helicase
RA 4,291,512 G→A 15.7% M1M (GTG→ATG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,291,513 T→C 15.8% M1A (GTG→GCG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,296,060 C→T 100% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,337,024 G→A 100% S3L (TCG→TTG)  adiC ← arginine:agmatine antiporter
RA 4,356,445 A→T 18.5% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 18.9% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
JC 4,370,608 Δ4 bp 18.2% intergenic (‑196/‑77) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
RA 4,370,616 A→G 60.2% intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
RA 4,376,280 G→A 17.3% intergenic (+15/‑37) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,376,291 T→C 17.9% intergenic (+26/‑26) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,376,819 A→T 15.8% intergenic (+120/‑56) ecnB → / → sugE entericidin B membrane lipoprotein/multidrug efflux system protein
RA 4,376,822 A→T 15.7% intergenic (+123/‑53) ecnB → / → sugE entericidin B membrane lipoprotein/multidrug efflux system protein
RA 4,382,091 C→T 81.3% W76* (TGG→TGA)  frdA ← anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit
RA 4,392,394 C→G 16.2% noncoding (35/76 nt) glyV → tRNA‑Gly
RA 4,397,557 G→T 100% G49V (GGT→GTT)  mutL → methyl‑directed mismatch repair protein
RA 4,399,842 G→A 22.1% V197V (GTG→GTA)  miaA → delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase
RA 4,408,903 (A)6→5 100% coding (2250/2442 nt) rnr → exoribonuclease R, RNase R
RA 4,410,037 T→C 15.6% intergenic (+31/‑96) rlmB → / → yjfI 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA 4,410,053 (T)9→8 100% intergenic (+47/‑80) rlmB → / → yjfI 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA 4,424,465 G→T 18.4% intergenic (+79/+51) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,424,468 A→C 18.4% intergenic (+82/+48) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,439,845 T→A 15.8% intergenic (+52/+27) ytfK → / ← ytfL DUF1107 family protein/UPF0053 family inner membrane protein
RA 4,466,211 G→A 16.9% intergenic (‑31/+88) treB ← / ← treR trehalose‑specific PTS enzyme: IIB and IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
RA 4,467,129 C→T 84.1% E40K (GAA→AAA)  treR ← trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
RA 4,479,016 G→C 15.6% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 15.3% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,494,883:1 (A)7→8 100% coding (261/564 nt) idnK → D‑gluconate kinase, thermosensitive
RA 4,503,169 (G)5→4 100% coding (263/1329 nt) insG ← IS4 transposase
RA 4,508,682 T→A 15.6% pseudogene (261/267 nt) insM ← pseudogene, IS600 transposase;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related
RA 4,517,951:1 (C)6→7 100% coding (285/522 nt) fecI ← RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor
RA 4,520,500 Δ1 bp 23.0% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 21.4% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,551,422 T→A 19.7% intergenic (‑126/‑214) gntP ← / → uxuA fructuronate transporter/mannonate hydrolase
RA 4,573,528 A→G 100% pseudogene (1115/1503 nt) yjiT → pseudogene
RA 4,606,215 (G)8→7 100% noncoding (72/87 nt) leuP ← tRNA‑Leu
RA 4,608,604 C→G 16.0% I140M (ATC→ATG)  rimI → ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA 4,608,607 C→G 15.5% I141M (ATC→ATG)  rimI → ribosomal‑protein‑S18‑alanine N‑acetyltransferase
JC 4,634,096 (AGA)3→2 15.8% coding (300‑302/648 nt) ytjC → phosphatase
RA 4,638,193:1 (C)6→7 100% coding (16/1353 nt) creD → inner membrane protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423704–3424597 3424597 1–894 54 [52] [51] 53 [rrfD]–[rrlD] [rrfD], [rrlD]
* * ÷ NC_000913 3621163–3622313 3622644–3622421 109–1482 54 [51] [52] 53 rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16653NA (NA)16 (0.190) 11/164 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 49692 =84 (0.920)13 (0.160) 6/158 NT 16.1% intergenic (+61/‑131) kefC/folA potassium:proton antiporter/dihydrofolate reductase
?NC_000913 49723 = 61 (0.750)intergenic (+92/‑100) kefC/folA potassium:proton antiporter/dihydrofolate reductase
* ? NC_000913 72169 =NA (NA)8 (0.090) 6/164 NT NA noncoding (34/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3296999 = NA (NA)noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 10875688 (0.960)15 (0.180) 5/166 NT 15.2% coding (478/2706 nt) secA preprotein translocase subunit, ATPase
?NC_000913 = 108767 86 (1.010)coding (489/2706 nt) secA preprotein translocase subunit, ATPase
* ? NC_000913 = 16113476 (0.830)18 (0.220) 12/162 NT 19.0% coding (353/705 nt) sfsA sugar fermentation stimulation protein A
?NC_000913 = 161144 84 (1.010)coding (343/705 nt) sfsA sugar fermentation stimulation protein A
* ? NC_000913 166895 =84 (0.920)14 (0.170) 5/164 NT 15.4% coding (2166/2535 nt) mrcB fused glycosyl transferase and transpeptidase
?NC_000913 166923 = 76 (0.900)coding (2194/2535 nt) mrcB fused glycosyl transferase and transpeptidase
* ? NC_000913 = 213635NA (NA)9 (0.110) 7/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 225078 =NA (NA)45 (0.530) 13/164 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 22572194 (1.030)17 (0.190) 5/170 NT 16.8% intergenic (+146/‑38) alaV/rrlH tRNA‑Ala/23S ribosomal RNA of rrnH operon
?NC_000913 = 225751 79 (0.900)intergenic (+176/‑8) alaV/rrlH tRNA‑Ala/23S ribosomal RNA of rrnH operon
* ? NC_000913 226704 =NA (NA)10 (0.110) 6/170 NT NA noncoding (946/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226730 = NA (NA)noncoding (972/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 227242 =NA (NA)20 (0.230) 9/166 NT NA noncoding (1484/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 227264 = NA (NA)noncoding (1506/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228016 =NA (NA)35 (0.410) 10/164 NT NA noncoding (2258/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228041 = NA (NA)noncoding (2283/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228022NA (NA)20 (0.240) 11/164 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228108NA (NA)38 (0.430) 12/170 NT NA noncoding (2350/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228124 NA (NA)noncoding (2366/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228224NA (NA)19 (0.220) 8/166 NT NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228721 =NA (NA)36 (0.420) 11/166 NT NA intergenic (+59/‑35) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913 228745 = NA (NA)intergenic (+83/‑11) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
* ? NC_000913 274347 =NA (NA)17 (0.200) 8/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274384 =NA (NA)19 (0.210) 9/172 NT NA noncoding (766/1195 nt) IS5 repeat region
?NC_000913 274422 = NA (NA)noncoding (728/1195 nt) IS5 repeat region
* ? NC_000913 274525 =NA (NA)8 (0.090) 8/164 NT NA noncoding (625/1195 nt) IS5 repeat region
?NC_000913 274559 = NA (NA)noncoding (591/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)23 (0.280) 11/160 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 274882NA (NA)16 (0.190) 10/168 NT NA noncoding (268/1195 nt) IS5 repeat region
?NC_000913 = 274899 NA (NA)noncoding (251/1195 nt) IS5 repeat region
* ? NC_000913 274946 =NA (NA)3 (0.030) 3/174 NT NA noncoding (204/1195 nt) IS5 repeat region
?NC_000913 274982 = NA (NA)noncoding (168/1195 nt) IS5 repeat region
* ? NC_000913 274965 =NA (NA)22 (0.250) 10/172 NT NA noncoding (185/1195 nt) IS5 repeat region
?NC_000913 274991 = NA (NA)noncoding (159/1195 nt) IS5 repeat region
* ? NC_000913 = 277706NA (NA)11 (0.130) 8/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 279841NA (NA)15 (0.170) 8/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region
* ? NC_000913 = 315572NA (NA)17 (0.210) 10/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 315642 =NA (NA)23 (0.270) 12/168 NT NA noncoding (414/1255 nt) IS3 repeat region
?NC_000913 315671 = NA (NA)noncoding (443/1255 nt) IS3 repeat region
* ? NC_000913 = 315646NA (NA)23 (0.270) 13/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region
* ? NC_000913 315892 =NA (NA)9 (0.100) 6/172 NT NA noncoding (664/1255 nt) IS3 repeat region
?NC_000913 315923 = NA (NA)noncoding (695/1255 nt) IS3 repeat region
* ? NC_000913 349605 =NA (NA)11 (0.130) 5/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 349666101 (1.100)15 (0.180) 4/164 NT 15.5% noncoding (62/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349776 70 (0.830)noncoding (172/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 354733NA (NA)9 (0.110) 5/164 NT NA noncoding (135/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354765 NA (NA)noncoding (167/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 381663 =NA (NA)20 (0.240) 8/164 NT NA noncoding (404/1331 nt) IS2 repeat region
?NC_000913 381703 = NA (NA)noncoding (444/1331 nt) IS2 repeat region
* ? NC_000913 = 381669NA (NA)24 (0.280) 11/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 381819 =NA (NA)34 (0.400) 13/164 NT NA noncoding (560/1331 nt) IS2 repeat region
?NC_000913 381841 = NA (NA)noncoding (582/1331 nt) IS2 repeat region
* ? NC_000913 = 381837NA (NA)11 (0.130) 7/166 NT NA noncoding (578/1331 nt) IS2 repeat region
?NC_000913 = 381852 NA (NA)noncoding (593/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)43 (0.500) 12/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 382282 =NA (NA)17 (0.200) 11/166 NT NA noncoding (1023/1331 nt) IS2 repeat region
?NC_000913 382313 = NA (NA)noncoding (1054/1331 nt) IS2 repeat region
* ? NC_000913 = 409055NA (NA)10 (0.120) 7/164 NT NA noncoding (4/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 409088 NA (NA)noncoding (37/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 409056 =NA (NA)12 (0.140) 6/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
* ? NC_000913 = 48428362 (0.680)12 (0.140) 5/162 NT 16.1% coding (121/3150 nt) acrB multidrug efflux system protein
?NC_000913 = 484309 69 (0.830)coding (95/3150 nt) acrB multidrug efflux system protein
* ? NC_000913 497914 =NA (NA)5 (0.060) 3/166 NT NA intergenic (+95/‑141) adk/hemH adenylate kinase/ferrochelatase
?NC_000913 497936 = NA (NA)intergenic (+117/‑119) adk/hemH adenylate kinase/ferrochelatase
* ? NC_000913 526259 =NA (NA)11 (0.130) 5/168 NT 100% coding (2999/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 526275 = 0 (0.000)coding (3015/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 707773 =NA (NA)11 (0.130) 8/160 NT NA noncoding (4/165 nt) RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 707805 = NA (NA)noncoding (36/165 nt) RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 729981 =NA (NA)6 (0.070) 9/168 NT NA coding (399/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 730006 = NA (NA)coding (424/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 730045NA (NA)15 (0.170) 7/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 762891NA (NA)9 (0.110) 8/164 NT NA noncoding (130/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 762924 NA (NA)noncoding (163/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 765068 =97 (1.060)15 (0.180) 8/166 NT 15.9% intergenic (+19/+85) sucD/mngR succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon
?NC_000913 765107 = 68 (0.800)intergenic (+58/+46) sucD/mngR succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon
* ? NC_000913 = 819757NA (NA)9 (0.110) 6/166 NT NA intergenic (+10/‑127) moaE/ybhL molybdopterin synthase, large subunit/putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein
?NC_000913 = 819784 NA (NA)noncoding (27/27 nt) REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 900753 =NA (NA)5 (0.060) 4/164 NT NA noncoding (5/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 900783 = NA (NA)noncoding (35/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 101738775 (0.820)13 (0.150) 8/166 NT 15.6% coding (913/1761 nt) ycbZ putative peptidase
?NC_000913 = 1017399 71 (0.830)coding (901/1761 nt) ycbZ putative peptidase
* ? NC_000913 = 1100819NA (NA)6 (0.070) 4/170 NT NA intergenic (+32/+32) ycdZ/csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
?NC_000913 = 1100840 NA (NA)intergenic (+53/+11) ycdZ/csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
* ? NC_000913 = 1134653NA (NA)10 (0.120) 6/164 NT NA noncoding (68/98 nt) RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3598495 NA (NA)noncoding (99/99 nt) RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 117724572 (0.790)13 (0.160) 9/162 NT 15.3% coding (627/702 nt) lolD outer membrane‑specific lipoprotein transporter subunit
?NC_000913 = 1177257 79 (0.950)coding (639/702 nt) lolD outer membrane‑specific lipoprotein transporter subunit
* ? NC_000913 1208471 =74 (0.810)15 (0.180) 5/162 NT 20.4% coding (340/414 nt) tfaP e14 prophage; uncharacterized protein
?NC_000913 1208500 = 50 (0.600)coding (369/414 nt) tfaP e14 prophage; uncharacterized protein
* ? NC_000913 = 126969471 (0.770)11 (0.130) 4/166 NT 20.0% intergenic (‑419/+9) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
?NC_000913 = 1270193 22 (0.260)intergenic (‑383/+45) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 1269811 =80 (0.870)20 (0.240) 6/162 NT 20.0% intergenic (‑1/+427) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
?NC_000913 1269849 = 87 (1.040)intergenic (‑39/+389) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 = 126984889 (0.970)20 (0.240) 7/162 NT 19.8% intergenic (‑38/+390) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
?NC_000913 = 1270345 NA (NA)coding (1/108 nt) ldrC toxic polypeptide, small
* ? NC_000913 = 12994980 (0.000)78 (0.890) 61/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 130098977 (0.840)14 (0.170) 10/162 NT 16.1% intergenic (+1744/‑193) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 = 1300996 76 (0.910)intergenic (+1751/‑186) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 1327735 =NA (NA)12 (0.140) 8/162 NT NA intergenic (+8/+32) rluB/btuR 23S rRNA pseudouridine(2605) synthase/cob(I)yrinic acid a,c‑diamide adenosyltransferase
?NC_000913 1327758 = NA (NA)intergenic (+31/+9) rluB/btuR 23S rRNA pseudouridine(2605) synthase/cob(I)yrinic acid a,c‑diamide adenosyltransferase
* ? NC_000913 = 1432881NA (NA)4 (0.050) 4/166 NT NA coding (471/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432894 NA (NA)coding (484/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
* ? NC_000913 1460515 =96 (1.050)15 (0.180) 9/164 NT 15.1% coding (45/423 nt) paaI hydroxyphenylacetyl‑CoA thioesterase
?NC_000913 1460544 = 80 (0.950)coding (74/423 nt) paaI hydroxyphenylacetyl‑CoA thioesterase
* ? NC_000913 1465092 =73 (0.800)13 (0.160) 8/156 NT 18.1% intergenic (+31/+73) paaY/ynbG thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
?NC_000913 1465125 = 54 (0.670)intergenic (+64/+40) paaY/ynbG thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
* ? NC_000913 1534883 =NA (NA)7 (0.080) 8/162 NT NA noncoding (1/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1534913 = NA (NA)noncoding (31/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 1571288NA (NA)14 (0.160) 8/172 NT 20.3% coding (758/1401 nt) gadB glutamate decarboxylase B, PLP‑dependent
?NC_000913 = 1571318 57 (0.620)coding (728/1401 nt) gadB glutamate decarboxylase B, PLP‑dependent
* ? NC_000913 = 1592638NA (NA)8 (0.100) 6/156 NT NA noncoding (8/25 nt) REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1592647 NA (NA)noncoding (17/25 nt) REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1679300 =70 (0.760)13 (0.160) 10/160 NT 16.4% coding (874/945 nt) ydgH DUF1471 family periplasmic protein
?NC_000913 1679340 = 70 (0.850)coding (914/945 nt) ydgH DUF1471 family periplasmic protein
* ? NC_000913 1735983 =NA (NA)6 (0.070) 4/166 NT NA noncoding (1/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1736008 = NA (NA)noncoding (26/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1745893 =94 (1.030)14 (0.170) 10/160 NT 15.4% coding (235/1257 nt) ydhQ autotransporter adhesin‑related protein
?NC_000913 1745928 = 69 (0.840)coding (200/1257 nt) ydhQ autotransporter adhesin‑related protein
* ? NC_000913 1840374 =65 (0.710)12 (0.140) 8/166 NT 16.7% coding (908/1308 nt) ynjE molybdopterin synthase sulfurtransferase
?NC_000913 1840391 = 59 (0.690)coding (925/1308 nt) ynjE molybdopterin synthase sulfurtransferase
* ? NC_000913 1843724 =NA (NA)13 (0.150) 6/164 NT NA noncoding (1/93 nt) REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1843750 = NA (NA)noncoding (27/93 nt) REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1886815 =85 (0.930)16 (0.200) 10/156 NT 18.6% intergenic (+5/+49) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
?NC_000913 1886858 = 66 (0.820)intergenic (+48/+6) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
* ? NC_000913 1908216 =77 (0.840)12 (0.150) 7/156 NT 15.3% intergenic (‑625/+45) yobF/yebO DUF2527 family heat‑induced protein/putative inner membrane protein
?NC_000913 1908248 = 66 (0.820)intergenic (‑657/+13) yobF/yebO DUF2527 family heat‑induced protein/putative inner membrane protein
* ? NC_000913 1944219 =NA (NA)12 (0.140) 9/164 NT NA noncoding (1/127 nt) REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 1944249 = NA (NA)noncoding (31/127 nt) REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 = 199269574 (0.810)14 (0.170) 7/162 NT 18.0% coding (123/549 nt) pgsA phosphatidylglycerophosphate synthetase
?NC_000913 = 1992709 60 (0.720)coding (109/549 nt) pgsA phosphatidylglycerophosphate synthetase
* ? NC_000913 = 20668320 (0.000)21 (0.260) 6/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 = 2151683NA (NA)10 (0.120) 8/156 NT NA noncoding (10/28 nt) REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 2151691 NA (NA)noncoding (18/28 nt) REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 220445772 (0.790)14 (0.170) 11/156 NT 17.3% intergenic (+168/‑139) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
?NC_000913 = 2204480 71 (0.890)intergenic (+191/‑116) yehK/yehL uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
* ? NC_000913 2340313 =NA (NA)8 (0.090) 5/164 NT NA noncoding (1/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2340346 = NA (NA)noncoding (34/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2393130 =NA (NA)15 (0.170) 9/170 NT NA intergenic (‑89/+75) nuoM/nuoL NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913 2393163 = NA (NA)noncoding (33/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2443835NA (NA)16 (0.190) 8/164 NT NA noncoding (47/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2443868 NA (NA)noncoding (80/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2489189 =80 (0.870)15 (0.180) 9/164 NT 16.6% intergenic (‑21/+53) yfdE/yfdV acetyl‑CoA:oxalate CoA‑transferase/putative transporter
?NC_000913 2489214 = 77 (0.910)intergenic (‑46/+28) yfdE/yfdV acetyl‑CoA:oxalate CoA‑transferase/putative transporter
* ? NC_000913 = 253370575 (0.820)15 (0.180) 7/162 NT 16.6% intergenic (+325/‑59) cysK/ptsH cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
?NC_000913 = 2533719 82 (0.980)intergenic (+339/‑45) cysK/ptsH cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
* ? NC_000913 = 2539674NA (NA)11 (0.130) 8/164 NT NA intergenic (‑91/+43) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
?NC_000913 = 2539688 NA (NA)intergenic (‑105/+29) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
* ? NC_000913 = 2593024NA (NA)7 (0.080) 4/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2638935 =77 (0.840)18 (0.210) 8/168 NT 19.6% coding (349/621 nt) yfgM ancillary SecYEG translocon subunit; putative anti‑RcsB factor
?NC_000913 2638965 = 75 (0.870)coding (319/621 nt) yfgM ancillary SecYEG translocon subunit; putative anti‑RcsB factor
* ? NC_000913 = 2655069NA (NA)5 (0.060)
+AACAAAGCGCACTG		 3/150 NT NA intergenic (‑136/+6) sseB/pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
?NC_000913 = 3741102 NA (NA)intergenic (+144/+7) avtA/ysaA valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component
* ? NC_000913 = 265952682 (0.890)17 (0.200) 10/162 NT 18.9% intergenic (‑59/+37) hscB/iscA HscA co‑chaperone, J domain‑containing protein Hsc56; IscU‑specific chaperone HscAB/FeS cluster assembly protein
?NC_000913 = 2659541 71 (0.850)intergenic (‑74/+22) hscB/iscA HscA co‑chaperone, J domain‑containing protein Hsc56; IscU‑specific chaperone HscAB/FeS cluster assembly protein
* ? NC_000913 = 2662534NA (NA)12 (0.150)
+CGTTTGTAG		 6/160 NT NA noncoding (226/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 3392342 NA (NA)noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
* ? NC_000913 2727847 =NA (NA)12 (0.140) 4/170 NT NA noncoding (1338/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727872 = NA (NA)noncoding (1313/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2727891 =NA (NA)47 (0.550) 13/166 NT NA noncoding (1294/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727910 = NA (NA)noncoding (1275/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)39 (0.450) 13/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2729630 =NA (NA)47 (0.540) 15/168 NT NA noncoding (1528/1542 nt) rrsG 16S ribosomal RNA of rrnG operon
?NC_000913 2729652 = NA (NA)noncoding (1506/1542 nt) rrsG 16S ribosomal RNA of rrnG operon
* ? NC_000913 2731304 =31 (0.340)22 (0.260) 5/166 NT 43.2% intergenic (‑147/+296) rrsG/clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
?NC_000913 = 4035360 NA (NA)intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
* ? NC_000913 = 2794135NA (NA)14 (0.160) 9/168 NT NA noncoding (108/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 = 2794163 NA (NA)noncoding (136/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 2835099 =NA (NA)13 (0.150) 5/164 NT NA noncoding (33/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3650712 = NA (NA)noncoding (1/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 2837465 =NA (NA)15 (0.180) 8/162 NT NA noncoding (1/27 nt) REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2837492 = NA (NA)intergenic (‑67/+86) hypF/hydN carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
* ? NC_000913 2842423 =NA (NA)17 (0.200) 8/164 NT NA noncoding (1/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2842453 = NA (NA)noncoding (31/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2888334 =NA (NA)10 (0.120) 9/164 NT NA noncoding (1/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2888367 = NA (NA)noncoding (34/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2900520 =85 (0.930)14 (0.170) 8/156 NT 15.2% intergenic (‑247/‑72) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 2900560 = 82 (1.020)intergenic (‑287/‑32) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
* ? NC_000913 = 290984672 (0.790)18 (0.220) 13/162 NT 20.3% intergenic (‑180/+48) pyrG/mazG CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
?NC_000913 = 2909872 76 (0.910)intergenic (‑206/+22) pyrG/mazG CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
* ? NC_000913 = 294933776 (0.830)13 (0.160) 5/162 NT 15.6% coding (96/1332 nt) argA amino acid N‑acetyltransferase and inactive acetylglutamate kinase
?NC_000913 = 2949352 72 (0.860)coding (111/1332 nt) argA amino acid N‑acetyltransferase and inactive acetylglutamate kinase
* ? NC_000913 2950598 =NA (NA)11 (0.140) 7/158 NT NA intergenic (+25/+37) argA/recD amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain
?NC_000913 2950615 = NA (NA)noncoding (3/14 nt) REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 297149886 (0.940)20 (0.230) 11/168 NT 19.2% intergenic (+9/‑99) ygdR/tas DUF903 family verified lipoprotein/putative NADP(H)‑dependent aldo‑keto reductase
?NC_000913 = 2971513 87 (1.010)intergenic (+24/‑84) ygdR/tas DUF903 family verified lipoprotein/putative NADP(H)‑dependent aldo‑keto reductase
* ? NC_000913 = 2972673100 (1.090)18 (0.200) 14/172 NT 15.0% coding (1190/1194 nt) lplT lysophospholipid transporter
?NC_000913 = 2972702 107 (1.210)coding (1161/1194 nt) lplT lysophospholipid transporter
* ? NC_000913 3012400 =NA (NA)6 (0.070) 6/166 NT NA intergenic (+7/+214) yqeA/yqeB putative amino acid kinase/XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold
?NC_000913 3012426 = NA (NA)noncoding (26/204 nt) RIP209 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site RIP209 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
* ? NC_000913 3139625 =NA (NA)8 (0.090) 6/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3203112 =NA (NA)13 (0.150) 9/164 NT NA coding (1222/1239 nt) cca fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
?NC_000913 3203140 = NA (NA)intergenic (+11/+170) cca/bacA fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
* ? NC_000913 = 3217490NA (NA)12 (0.140) 8/164 NT NA noncoding (57/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3217522 NA (NA)noncoding (89/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3252144NA (NA)10 (0.120) 5/166 NT NA noncoding (80/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3252155 NA (NA)noncoding (91/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 3255217 =NA (NA)8 (0.090) 5/164 NT NA noncoding (1/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3255247 = NA (NA)noncoding (31/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3277819 =NA (NA)7 (0.080) 4/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3296999 =NA (NA)13 (0.150) 7/164 NT NA noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3297032 = NA (NA)noncoding (34/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3313257 =NA (NA)7 (0.080) 4/166 NT NA noncoding (6/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3313287 = NA (NA)noncoding (36/77 nt) REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3344992 =81 (0.880)13 (0.160) 7/158 NT 16.5% coding (276/1434 nt) rpoN RNA polymerase, sigma 54 (sigma N) factor
?NC_000913 3345024 = 60 (0.740)coding (308/1434 nt) rpoN RNA polymerase, sigma 54 (sigma N) factor
* ? NC_000913 3423259 =126 (1.370)88 (1.070) 55/160 NT 58.3% intergenic (+65/+164) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 4213156 = 13 (0.160)noncoding (117/120 nt) rrfE 5S ribosomal RNA of rrnE operon
* ? NC_000913 = 3427251NA (NA)9 (0.100) 7/168 NT 30.3% noncoding (1512/1542 nt) rrsD 16S ribosomal RNA of rrnD operon
?NC_000913 4209670 = 22 (0.240)noncoding (1524/1542 nt) rrsE 16S ribosomal RNA of rrnE operon
* ? NC_000913 3428468 =4 (0.040)38 (0.450) 8/164 NT 91.2% noncoding (295/1542 nt) rrsD 16S ribosomal RNA of rrnD operon
?NC_000913 = 4035834 NA (NA)noncoding (304/1542 nt) rrsA 16S ribosomal RNA of rrnA operon
* ? NC_000913 = 347111524 (0.260)8 (0.090) 8/168 NT 19.6% coding (215/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 4176196 = 43 (0.500)coding (253/1185 nt) tufB translation elongation factor EF‑Tu 2
* ? NC_000913 = 3555802NA (NA)10 (0.120) 9/162 NT NA noncoding (7/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3555812 NA (NA)noncoding (17/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3619655 =NA (NA)8 (0.090) 7/168 NT 100% coding (464/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619677 = 0 (0.000)coding (486/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620123 =NA (NA)8 (0.090) 6/166 NT 100% coding (932/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620147 = 0 (0.000)coding (956/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620220NA (NA)19 (0.220) 10/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620350NA (NA)13 (0.150) 8/166 NT 100% coding (1159/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620425 0 (0.000)coding (1234/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620562NA (NA)13 (0.150) 5/166 NT 100% coding (1371/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620587 0 (0.000)coding (1396/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620569 =NA (NA)18 (0.210) 9/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620614NA (NA)21 (0.250) 10/166 NT 100% coding (1423/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620635 0 (0.000)coding (1444/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3635910 =72 (0.790)17 (0.210) 10/154 NT 20.3% intergenic (+17/+298) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 3635946 = 71 (0.900)intergenic (+53/+262) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
* ? NC_000913 = 363592172 (0.790)17 (0.210) 9/154 NT 20.3% intergenic (+28/+287) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 = 3635933 71 (0.900)intergenic (+40/+275) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
* ? NC_000913 3733201 =82 (0.890)12 (0.140) 8/164 NT 15.1% coding (1001/1542 nt) xylG D‑xylose ABC transporter dual domain ATPase
?NC_000913 3733225 = 59 (0.700)coding (1025/1542 nt) xylG D‑xylose ABC transporter dual domain ATPase
* ? NC_000913 3765492 =NA (NA)23 (0.260) 8/170 NT 18.5% coding (3310/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 3767207 = 106 (1.160)intergenic (+28/‑14) yibA/rhsJ putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein/Rhs‑family protein
* ? NC_000913 = 37655060 (0.000)6 (0.070) 6/170 NT 100% coding (3324/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 = 3765524 NA (NA)coding (3342/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
* ? NC_000913 3765534 =NA (NA)19 (0.220) 4/168 NT 100% coding (3352/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 3765547 = 0 (0.000)coding (3365/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
* ? NC_000913 = 377571899 (1.080)19 (0.220) 10/166 NT 17.3% coding (147/588 nt) mtlR mannitol operon repressor
?NC_000913 = 3775735 90 (1.050)coding (164/588 nt) mtlR mannitol operon repressor
* ? NC_000913 = 386191977 (0.840)14 (0.170) 6/164 NT 16.3% pseudogene (69/815 nt) glvG pseudogene; probable 6‑phospho‑beta‑glucosidase
?NC_000913 = 3861934 73 (0.870)pseudogene (54/815 nt) glvG pseudogene; probable 6‑phospho‑beta‑glucosidase
* ? NC_000913 3908387 =NA (NA)14 (0.170) 8/164 NT NA noncoding (1/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3908412 = NA (NA)noncoding (26/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3946822NA (NA)32 (0.360) 7/174 NT 17.5% intergenic (+3/‑50) rrfC/aspT 5S ribosomal RNA of rrnC operon/tRNA‑Asp
?NC_000913 = 4040683 154 (1.680)intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
* ? NC_000913 = 397743080 (0.870)15 (0.180) 8/164 NT 15.3% coding (1153/1251 nt) wzxE O‑antigen translocase
?NC_000913 = 3977447 92 (1.090)coding (1170/1251 nt) wzxE O‑antigen translocase
* ? NC_000913 = 3984294NA (NA)4 (0.050) 4/170 NT NA noncoding (75/104 nt) RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3984320 NA (NA)noncoding (101/104 nt) RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4040481NA (NA)50 (0.590) 11/166 NT 100% intergenic (+58/‑36) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 = 4040505 0 (0.000)intergenic (+82/‑12) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 4049740 =84 (0.920)15 (0.180) 10/164 NT 16.5% coding (2775/2787 nt) polA 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease
?NC_000913 4049764 = 74 (0.880)intergenic (+12/+369) polA/yihA 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein
* ? NC_000913 4094320 =NA (NA)10 (0.120) 5/164 NT NA noncoding (5/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 4094350 = NA (NA)noncoding (35/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
* ? NC_000913 = 412470979 (0.860)14 (0.170) 9/164 NT 15.1% coding (2102/2199 nt) priA Primosome factor n' (replication factor Y)
?NC_000913 = 4124729 85 (1.010)coding (2082/2199 nt) priA Primosome factor n' (replication factor Y)
* ? NC_000913 4148421 =NA (NA)4 (0.050) 4/168 NT NA intergenic (‑104/+111) yijO/eptC AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
?NC_000913 4148465 = NA (NA)noncoding (36/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4153658NA (NA)10 (0.120) 7/164 NT NA noncoding (312/346 nt) REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 4153688 NA (NA)noncoding (342/346 nt) REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 = 416834112 (0.130)9 (0.110) 7/158 NT 45.8% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 NA (NA)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 4229380 =NA (NA)16 (0.190) 7/164 NT NA noncoding (5/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4229413 = NA (NA)noncoding (38/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4254000NA (NA)9 (0.110) 5/164 NT NA noncoding (100/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 4254030 NA (NA)noncoding (130/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 = 4295947NA (NA)12 (0.140) 6/164 NT 18.9% noncoding (113/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4295980 56 (0.610)noncoding (146/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4317917 =NA (NA)14 (0.170) 5/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4323250 =NA (NA)7 (0.080) 7/164 NT NA noncoding (5/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4323280 = NA (NA)noncoding (35/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4325831 =NA (NA)22 (0.260) 6/164 NT 17.9% noncoding (30/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4325913 = 101 (1.200)noncoding (112/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 4326350NA (NA)12 (0.140) 5/164 NT NA noncoding (549/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 4326380 NA (NA)noncoding (579/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 4332016NA (NA)7 (0.090) 6/160 NT NA noncoding (3/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4332045 NA (NA)noncoding (32/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4386018 =NA (NA)8 (0.090) 6/164 NT NA coding (315/315 nt) yjeO inner membrane protein
?NC_000913 4386040 = NA (NA)intergenic (+22/+7) yjeO/mscM inner membrane protein/mechanosensitive channel protein, miniconductance
* ? NC_000913 = 4415961NA (NA)10 (0.120) 10/166 NT NA noncoding (4/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4415991 NA (NA)noncoding (34/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4450948 =NA (NA)6 (0.070) 5/164 NT NA noncoding (5/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4450978 = NA (NA)noncoding (35/85 nt) REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4457231NA (NA)11 (0.130) 6/164 NT NA noncoding (47/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4457264 NA (NA)noncoding (80/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4460417 =NA (NA)10 (0.120) 6/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4475322 =100 (1.090)16 (0.200) 6/158 NT 16.2% intergenic (+8/‑115) tabA/yjgL biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein
?NC_000913 4475352 = 77 (0.950)intergenic (+38/‑85) tabA/yjgL biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein
* ? NC_000913 4549778 =NA (NA)7 (0.080) 6/174 NT NA intergenic (+68/+175) fimH/gntP minor component of type 1 fimbriae/fructuronate transporter
?NC_000913 4549830 = NA (NA)intergenic (+120/+123) fimH/gntP minor component of type 1 fimbriae/fructuronate transporter
* ? NC_000913 4554509 =NA (NA)8 (0.090) 6/164 NT NA noncoding (5/34 nt) REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4554539 = NA (NA)intergenic (+178/‑37) uxuB/uxuR D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
* ? NC_000913 4569947 =NA (NA)16 (0.190) 11/166 NT NA noncoding (2/99 nt) RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4569970 = NA (NA)noncoding (25/99 nt) RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 4587871 =NA (NA)16 (0.190) 9/162 NT NA intergenic (+8/+38) mrr/yjiA methylated adenine and cytosine restriction protein/metal‑binding GTPase
?NC_000913 4587900 = NA (NA)intergenic (+37/+9) mrr/yjiA methylated adenine and cytosine restriction protein/metal‑binding GTPase
* ? NC_000913 4627662 =76 (0.830)14 (0.160) 5/170 NT 16.5% coding (348/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
?NC_000913 4627688 = 69 (0.790)coding (374/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor