mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1153 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638329 | 82 (0.890) | 8 (0.090) | 5/168 | NT | 8.8% | coding (152/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638348 | 89 (1.030) | coding (171/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4636809 | 104 (1.130) | 5 (0.060) | 5/164 | NT | 4.7% | coding (114/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4636834 | 105 (1.240) | coding (139/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| * | ? | NC_000913 | = 4628749 | 95 (1.040) | 12 (0.140) | 8/164 | NT | 12.2% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 86 (1.020) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4624213 = | 100 (1.090) | 7 (0.080) | 5/168 | NT | 7.7% | coding (577/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein |
| ? | NC_000913 | 4624245 = | 73 (0.840) | coding (545/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein | |||||
| * | ? | NC_000913 | = 4622123 | 91 (0.990) | 3 (0.030) | 3/168 | NT | 3.4% | coding (355/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4622142 | 87 (1.010) | coding (374/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | 4621160 = | 88 (0.960) | 12 (0.140) | 7/162 | NT | 13.3% | coding (278/720 nt) | deoD | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase |
| ? | NC_000913 | 4621189 = | 77 (0.920) | coding (307/720 nt) | deoD | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase | |||||
| * | ? | NC_000913 | 4618029 = | 101 (1.100) | 12 (0.140) | 9/166 | NT | 11.6% | coding (707/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | NC_000913 | 4618065 = | 89 (1.040) | coding (743/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | NC_000913 | 4617850 = | 103 (1.120) | 11 (0.130) | 9/170 | NT | 10.5% | coding (528/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | NC_000913 | 4617871 = | 90 (1.030) | coding (549/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | NC_000913 | 4615433 = | 97 (1.060) | 7 (0.090) | 7/158 | NT | 8.3% | coding (111/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4615467 = | 69 (0.850) | coding (77/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4614132 = | 106 (1.160) | 5 (0.060) | 5/160 | NT | 5.2% | coding (652/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | 4614163 = | 88 (1.070) | coding (683/780 nt) | yjjV | putative DNase | |||||