Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F228 I1 R1 66 128.3 6536509 94.2% 6157391 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 460,991 G→A A702T (GCA→ACA)  lon → DNA‑binding ATP‑dependent protease La

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913460,9910GA95.5% 349.1 / 4.2 110A702T (GCA→ACA) lonDNA‑binding ATP‑dependent protease La
Reads supporting (aligned to +/- strand):  ref base G (1/4);  new base A (65/40);  total (66/44)
Fisher's exact test for biased strand distribution p-value = 1.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01

Only 100 of 110 total aligned reads displayed.

GGAAGGTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGATTAAAACAG  >  NC_000913/460894‑461087
                                                                                                 |                                                                                                
ggAAGGTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACa                                                                                                <  1:1152184/100‑1 (MQ=255)
 gAAGGTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACaa                                                                                               >  1:914597/1‑100 (MQ=255)
   aGGTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATg                                                                                             >  1:1017491/1‑100 (MQ=255)
     gTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGAc                                                                                           >  2:731672/1‑100 (MQ=255)
      tGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGAcc                                                                                          <  2:1161308/100‑1 (MQ=255)
       gCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCg                                                                                         >  2:1871085/1‑100 (MQ=255)
         gACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGt                                                                                       <  2:2418948/100‑1 (MQ=255)
          aCGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTg                                                                                      <  1:2169503/100‑1 (MQ=255)
          aCGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTg                                                                                      <  2:3026245/100‑1 (MQ=255)
          aCGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTACCGATGTGACAATGACCGGTg                                                                                      <  2:258762/100‑1 (MQ=255)
            gCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTgag                                                                                    >  1:30408/1‑100 (MQ=255)
              cGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGAt                                                                                  >  2:323902/1‑100 (MQ=255)
               gAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATc                                                                                 >  2:383244/1‑100 (MQ=255)
                   gATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCActc                                                                             <  2:3194204/100‑1 (MQ=255)
                   gATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCActc                                                                             >  2:2755162/1‑100 (MQ=255)
                      ggTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGc                                                                          >  1:509611/1‑100 (MQ=255)
                      ggTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGc                                                                          >  2:171268/1‑100 (MQ=255)
                      ggTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGc                                                                          >  2:2400982/1‑100 (MQ=255)
                      ggTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGc                                                                          >  1:199585/1‑100 (MQ=255)
                      ggTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGc                                                                          >  1:1128913/1‑100 (MQ=255)
                       gTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCg                                                                         <  2:2324684/100‑1 (MQ=255)
                       gTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCg                                                                         >  1:1264454/1‑100 (MQ=255)
                       gTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCg                                                                         <  2:920840/100‑1 (MQ=255)
                       gTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCg                                                                         <  1:2307896/100‑1 (MQ=255)
                       gTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCg                                                                         <  1:731680/100‑1 (MQ=255)
                         ccGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTg                                                                       >  2:2189625/1‑100 (MQ=255)
                          cGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTgg                                                                      >  1:1048762/1‑100 (MQ=255)
                               gCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAgg                                                                 >  2:933862/1‑100 (MQ=255)
                               gCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAgg                                                                 >  2:1105148/1‑100 (MQ=255)
                               gCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAgg                                                                 >  1:666975/1‑100 (MQ=255)
                                ccGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGt                                                                <  1:2259635/100‑1 (MQ=255)
                                ccGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGt                                                                >  1:2333927/1‑100 (MQ=255)
                                ccGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGt                                                                >  1:1774477/1‑100 (MQ=255)
                                  ggTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTAc                                                              >  1:3014358/1‑100 (MQ=255)
                                   gTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACt                                                             >  2:3005879/1‑100 (MQ=255)
                                    tATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTg                                                            <  2:1181490/100‑1 (MQ=255)
                                      ttGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCTGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGcc                                                          <  2:2079751/100‑1 (MQ=255)
                                      ttGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGcc                                                          <  2:2333900/100‑1 (MQ=255)
                                        gCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGa                                                        >  1:1895749/1‑100 (MQ=255)
                                        gCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGa                                                        >  1:772818/1‑100 (MQ=255)
                                        gCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGa                                                        >  1:2036297/1‑100 (MQ=255)
                                        gCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGa                                                        >  2:3013488/1‑100 (MQ=255)
                                         cTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGAt                                                       >  2:1372862/1‑100 (MQ=255)
                                         cTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGAt                                                       <  2:707197/100‑1 (MQ=255)
                                          tATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATc                                                      >  1:1628108/1‑100 (MQ=255)
                                          tATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATc                                                      >  2:3202313/1‑100 (MQ=255)
                                            tgtgCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCgg                                                    >  1:2968464/1‑100 (MQ=255)
                                              tgCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtg                                                  <  1:75022/100‑1 (MQ=255)
                                              tgCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtg                                                  >  2:3223648/1‑100 (MQ=255)
                                              tgCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtg                                                  <  2:2458663/100‑1 (MQ=255)
                                               gCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtgg                                                 >  1:1158393/1‑100 (MQ=255)
                                               gCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtgg                                                 >  2:338655/1‑100 (MQ=255)
                                               gCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtgg                                                 >  1:1456451/1‑100 (MQ=255)
                                                  ccGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGttt                                              <  2:1597041/100‑1 (MQ=255)
                                                   cgcgCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCggtggt                                                <  2:1253403/97‑1 (MQ=255)
                                                   cgcgCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTg                                             <  2:1628089/100‑1 (MQ=255)
                                                    gcgcTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTg                                             >  1:794095/1‑99 (MQ=255)
                                                     cgcTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaa                                           <  2:902763/100‑1 (MQ=255)
                                                      gcTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaa                                          <  1:1077783/100‑1 (MQ=255)
                                                      gcTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaa                                          >  1:628507/1‑100 (MQ=255)
                                                       cTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATTGGTGGTTTgaaag                                         <  2:2021282/100‑1 (MQ=255)
                                                       cTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaag                                         <  2:914585/100‑1 (MQ=255)
                                                       cTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaa                                          >  1:2474896/1‑99 (MQ=255)
                                                       cTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTACCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaag                                         >  2:2154619/1‑100 (MQ=255)
                                                        tGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaaga                                        >  2:1938081/1‑100 (MQ=255)
                                                        tGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaaga                                        <  1:379916/100‑1 (MQ=255)
                                                         ggTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaagaa                                       >  1:1508091/1‑100 (MQ=255)
                                                         ggTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaagaa                                       <  2:620235/100‑1 (MQ=255)
                                                          gTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTgaaagaaa                                      <  2:3014322/100‑1 (MQ=255)
                                                           tttCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTATGCGTGGTCAGGTACTGCCGATCGGTGGGTTGAAAGacaa                                     >  1:2765407/1‑100 (MQ=255)
                                                             tCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAAc                                   <  1:3029429/100‑1 (MQ=255)
                                                              cTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACt                                  >  1:2406565/1‑100 (MQ=255)
                                                                tGCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCAATCGGTGGTTTGAAAGAAAAACTc                                 >  2:763555/1‑99 (MQ=255)
                                                                ngCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTc                                 >  2:325413/2‑99 (MQ=255)
                                                                 gCCTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCt                               <  1:2239399/100‑1 (MQ=255)
                                                                  ccTGACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTg                              >  1:1806659/1‑100 (MQ=255)
                                                                  ccTGACCGGTAACCCGGTTCGTGCAGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTg                              <  2:787798/100‑1 (MQ=255)
                                                                   cTGACCGGTAACCCGGTTCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTgg                             >  1:446650/1‑100 (MQ=255)
                                                                     gACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCa                           >  1:2163832/1‑100 (MQ=255)
                                                                     gACCGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCa                           >  1:1386493/1‑100 (MQ=255)
                                                                     gACCGGTAACCCGGTTCGTGCCGATGCGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCa                           >  1:1984159/1‑100 (MQ=255)
                                                                       ccGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAgc                         <  1:745736/100‑1 (MQ=255)
                                                                        cGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAgcg                        >  2:2543514/1‑100 (MQ=255)
                                                                        cGGTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAgcg                        <  2:1642500/100‑1 (MQ=255)
                                                                          gTAACCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCa                      >  2:1874232/1‑100 (MQ=255)
                                                                             aCCCGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATcg                   >  2:2284/1‑100 (MQ=255)
                                                                              cccGGTTCGTGTCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGAAGCGCATc                    >  2:2507168/1‑98 (MQ=255)
                                                                              cccGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATcgc                  >  1:1436209/1‑100 (MQ=255)
                                                                               ccGGTTCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATcgcg                 >  1:550352/1‑100 (MQ=255)
                                                                                   ttCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGcggcgg             <  1:644048/100‑1 (MQ=255)
                                                                                   ttCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGcggcgg             <  1:2451529/100‑1 (MQ=255)
                                                                                   ttCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGcggcgg             <  1:2004152/100‑1 (MQ=255)
                                                                                    tCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCggg            <  2:227539/100‑1 (MQ=255)
                                                                                    tCGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCggg            >  2:176867/1‑100 (MQ=255)
                                                                                     cGTGCCGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGa           >  2:2419521/1‑100 (MQ=255)
                                                                                       taccGATGTGACAATGACCGGTGAGATCACTATGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGAtt         >  1:2197242/3‑100 (MQ=255)
                                                                                       tGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGAtt         <  1:1590405/100‑1 (MQ=255)
                                                                                          cGATGTGACAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGATTaaa      <  1:933874/100‑1 (MQ=255)
                                                                                          cGATGTGACAATGACCGGTGAGATCACTCTGAGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGATTaaa      <  1:2970037/100‑1 (MQ=255)
                                                                                              gtgACAATGACCGGTGAGATCAGTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGATTAAAACAg  >  2:1892324/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GGAAGGTGCGACGCCGAAAGATGGTCCGAGTGCCGGTATTGCTATGTGCACCGCGCTGGTTTCTTGCCTGACCGGTAACCCGGTTCGTGCCGATGTGGCAATGACCGGTGAGATCACTCTGCGTGGTCAGGTACTGCCGATCGGTGGTTTGAAAGAAAAACTCCTGGCAGCGCATCGCGGCGGGATTAAAACAG  >  NC_000913/460894‑461087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A