Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F228 I1 R1 66 128.3 6536509 94.2% 6157391 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,109,928 (A)7→6 intergenic (+105/‑2) sbp → / → cdh sulfate transporter subunit/CDP‑diacylglycerol phosphotidylhydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,109,9220A.96.2% 545.3 / 13.2 130intergenic (+99/‑8)sbp/cdhsulfate transporter subunit/CDP‑diacylglycerol phosphotidylhydrolase
Reads supporting (aligned to +/- strand):  ref base A (0/5);  new base . (66/59);  total (66/64)
Fisher's exact test for biased strand distribution p-value = 2.66e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 143 total aligned reads displayed.

TTTCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAG  >  NC_000913/4109824‑4110017
                                                                                                  |                                                                                               
tttCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaa                                                                                                >  2:1599718/1‑100 (MQ=255)
 ttCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaa                                                                                               <  1:1220945/100‑1 (MQ=255)
 ttCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaa                                                                                               >  2:1346058/1‑100 (MQ=255)
  tCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaa                                                                                               <  2:2680133/99‑1 (MQ=255)
   ccccAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaa                                                                                             <  1:2588028/100‑1 (MQ=255)
   ccccAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaa                                                                                             >  2:700560/1‑100 (MQ=255)
    cccAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaaa                                                                                            >  1:1835768/1‑100 (MQ=255)
     ccAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGCGGTACAGGGcaaca                                                                                             >  2:2906020/1‑96 (MQ=255)
      cAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaaaga                                                                                          >  2:1979084/1‑98 (MQ=255)
       aGGATATTTCTCAATCCCGGTCGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaaagat                                                                                         <  2:1029258/100‑4 (MQ=255)
       aGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGaaaaaagat                                                                                         >  1:2251230/1‑97 (MQ=255)
          aTAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGaa                                                                                     >  1:932321/1‑100 (MQ=255)
            aaTTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGaaaa                                                                                   <  1:1090327/100‑1 (MQ=255)
               tATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCCTCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAg                                                                                >  2:1263092/1‑100 (MQ=255)
               tATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAg                                                                                >  1:427640/1‑100 (MQ=255)
                aTCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGc                                                                               >  2:3050438/1‑100 (MQ=255)
                 tCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCg                                                                              >  1:1100608/1‑100 (MQ=255)
                  cAAAGCCGGTGGTTTCTCGCGACCTGGTTTTTTATTTGTCACGAGTTTGGGTTACCCTTGCATGTCTTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCg                                                                              <  2:1053731/100‑1 (MQ=255)
                  cAAACCCGGTGGTTTCTCGCTACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCgg                                                                             >  2:1994356/1‑100 (MQ=255)
                  cAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCgg                                                                             >  1:2338793/1‑100 (MQ=255)
                  cAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCgg                                                                             <  1:2619638/100‑1 (MQ=255)
                  cAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCgg                                                                             >  2:732951/1‑100 (MQ=255)
                  cAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCgg                                                                             >  1:1328737/1‑100 (MQ=255)
                   aaaCCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCggg                                                                            >  2:2350652/1‑100 (MQ=255)
                   aaaCCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCggg                                                                            >  1:1349785/1‑100 (MQ=255)
                   aaaCCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCggg                                                                            >  2:687548/1‑100 (MQ=255)
                        cGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGtcttc                                                                       >  2:3174616/1‑100 (MQ=255)
                           tggtTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTcttctt                                                                     <  2:1074469/99‑1 (MQ=255)
                            ggtTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCtttt                                                                   >  2:1936304/1‑100 (MQ=255)
                              tttCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCtttttt                                                                 >  1:744230/1‑100 (MQ=255)
                                tctcGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTg                                                               >  1:2140477/1‑100 (MQ=255)
                                 ctcGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTgg                                                              <  2:1869205/100‑1 (MQ=255)
                                 ctcGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTgg                                                              >  2:1136301/1‑100 (MQ=255)
                                  tcGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAAAAAAA‑AAAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGt                                                             <  2:2152668/100‑1 (MQ=255)
                                   cgcgACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGTTCTTCTTTTTTTGGtg                                                            >  2:205292/1‑100 (MQ=255)
                                   cgcgACCGGGTTTTTTATTTATCACGATTTAGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGACCGTCTTTTTTTCGt                                                             >  2:2912229/1‑99 (MQ=255)
                                     cgACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTC‑TTTTTTGGtgatg                                                         <  2:1652875/100‑1 (MQ=255)
                                      gACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGtgatg                                                         >  2:677190/1‑100 (MQ=255)
                                      gACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGtgatg                                                         <  2:1208770/100‑1 (MQ=255)
                                      gACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGtgatg                                                         >  2:788746/1‑100 (MQ=255)
                                        ccGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTATAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTgatgat                                                       <  2:1790586/100‑1 (MQ=255)
                                         cGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATa                                                      >  1:2409107/1‑100 (MQ=255)
                                          gggTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAg                                                     <  1:1994380/100‑1 (MQ=255)
                                             ttttttATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTa                                                  >  2:1140458/1‑100 (MQ=255)
                                              tttttATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTAt                                                 >  2:911853/1‑100 (MQ=255)
                                                 ttATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTAGTGATGATAGTAATCGc                                              >  1:974613/1‑100 (MQ=255)
                                                  tATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAACGCTGGTCTTCTTTTTTTGGTGATGATAGTTATc                                                <  2:2144382/97‑1 (MQ=255)
                                                  tATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGcc                                             >  2:1560017/1‑100 (MQ=255)
                                                   aTTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCg                                            <  2:2182554/100‑1 (MQ=255)
                                                   aTTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCg                                            <  2:2251204/100‑1 (MQ=255)
                                                      tGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTCTTTTTGGTGATGATAGTTATCGCCGTtg                                         >  1:77301/1‑100 (MQ=255)
                                                        tCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTtgtg                                       >  2:2522110/1‑100 (MQ=255)
                                                        tCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTtgtg                                       >  1:2081596/1‑100 (MQ=255)
                                                         cACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTgg                                      >  1:3109674/1‑100 (MQ=255)
                                                          aCGATTTTGCGTTACCCTTGCATCTCTTTGATGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGc                                     <  2:427633/100‑1 (MQ=255)
                                                          aCGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGc                                     <  1:1127277/100‑1 (MQ=255)
                                                           cGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCt                                    >  2:2365635/1‑100 (MQ=255)
                                                            gATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTg                                   >  2:969508/1‑100 (MQ=255)
                                                             aTTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGc                                  <  2:886553/100‑1 (MQ=255)
                                                              ttttGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGcc                                 <  1:1206257/100‑1 (MQ=255)
                                                              ttttGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGcc                                 <  1:3254827/100‑1 (MQ=255)
                                                                ttGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCgg                               <  2:1484133/100‑1 (MQ=255)
                                                                ttGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCgg                               <  1:2873726/100‑1 (MQ=255)
                                                                ttGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCgg                               <  1:2458989/100‑1 (MQ=255)
                                                                 tGCGTTACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGt                              >  1:2281478/1‑100 (MQ=255)
                                                                     ttACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTg                          <  1:2609886/100‑1 (MQ=255)
                                                                     ttACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTg                          <  1:2522140/100‑1 (MQ=255)
                                                                      tACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTgg                         <  1:819961/100‑1 (MQ=255)
                                                                      tACCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTgg                         <  1:290476/100‑1 (MQ=255)
                                                                       aCCCTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTgg                         <  1:3111773/99‑1 (MQ=255)
                                                                        cccTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGtt                       >  2:869927/1‑100 (MQ=255)
                                                                         ccTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTa                      >  2:2239932/1‑100 (MQ=255)
                                                                          cTTGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTAc                     <  2:1690521/100‑1 (MQ=255)
                                                                           ttGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACt                    >  1:1760345/1‑100 (MQ=255)
                                                                           ttGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACt                    <  1:1979107/100‑1 (MQ=255)
                                                                            tGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTg                   <  1:2700141/100‑1 (MQ=255)
                                                                            tGCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTg                   >  1:2965369/1‑100 (MQ=255)
                                                                             gCATCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTgg                  >  2:1295821/1‑100 (MQ=255)
                                                                               aTCTCTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGa                 <  2:2949331/99‑1 (MQ=255)
                                                                                tctcTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGaaa               <  2:780858/100‑1 (MQ=255)
                                                                                tctcTTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGaaa               >  1:2829027/1‑100 (MQ=255)
                                                                                 ctctTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAAt              <  1:3174653/100‑1 (MQ=255)
                                                                                  tctTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAAtt             <  1:869938/100‑1 (MQ=255)
                                                                                   ctTTGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTa            >  1:3215888/1‑100 (MQ=255)
                                                                                      tGAGGTACAGGGAAAAAAA‑ATAAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAAcc         <  2:883179/100‑1 (MQ=255)
                                                                                      tGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTCTCGCCGTTGTGGCTGCCGGTATTGGTTACTGAAAATTaa           >  2:3130174/1‑98 (MQ=255)
                                                                                      tGAGGTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAAcc         >  2:559918/1‑100 (MQ=255)
                                                                                         ggTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGt      <  2:1328723/100‑1 (MQ=255)
                                                                                         ggTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGt      >  2:2701729/1‑100 (MQ=255)
                                                                                         ggTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGt      <  1:2665620/100‑1 (MQ=255)
                                                                                         ggTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGt      <  1:2837072/100‑1 (MQ=255)
                                                                                          gTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTg     <  1:1773690/100‑1 (MQ=255)
                                                                                          gTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTg     <  2:965071/100‑1 (MQ=255)
                                                                                          gTACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTg     >  2:1837896/1‑100 (MQ=255)
                                                                                          gTACAGGG‑AAAAAAGACGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTg     <  2:1908884/100‑1 (MQ=255)
                                                                                           tACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGa    <  1:700569/100‑1 (MQ=255)
                                                                                           tACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGa    <  2:1806003/100‑1 (MQ=255)
                                                                                           tACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGa    >  1:2683864/1‑100 (MQ=255)
                                                                                           tACAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGa    >  1:271017/1‑100 (MQ=255)
                                                                                             cAGGG‑AAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAag  <  1:2519617/100‑1 (MQ=255)
                                                                                                  |                                                                                               
TTTCCCCAGGATAATTATCAAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTGTCACGATTTTGCGTTACCCTTGCATCTCTTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAG  >  NC_000913/4109824‑4110017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A