Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F244 I1 R1 118 120.6 6073099 93.5% 5678347 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,429,362 G→A V43I (GTT→ATT)  yrdA → bacterial transferase hexapeptide domain protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,429,3620GA100.0% 311.1 / NA 91V43I (GTT→ATT) yrdAbacterial transferase hexapeptide domain protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/55);  total (36/55)

TCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCGTACA  >  NC_000913/3429265‑3429458
                                                                                                 |                                                                                                
tCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCAtt                                                                                                <  1:2025266/100‑1 (MQ=255)
 cTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATtg                                                                                               >  2:379182/1‑100 (MQ=255)
  tttttCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATtgt                                                                                              <  1:1142934/100‑1 (MQ=255)
  tttttCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATtgt                                                                                              <  1:1525869/100‑1 (MQ=255)
   ttttCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATtgtg                                                                                             <  2:2979942/100‑1 (MQ=255)
     ttCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGAt                                                                                           <  1:807716/100‑1 (MQ=255)
     ttCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGAt                                                                                           <  1:282896/100‑1 (MQ=255)
      tCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGAtt                                                                                          <  1:781867/100‑1 (MQ=255)
       ccACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTc                                                                                         <  2:2701607/100‑1 (MQ=255)
        cacaAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCg                                                                                        >  1:1017674/1‑100 (MQ=255)
          caAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGt                                                                                       <  1:1873394/99‑1 (MQ=255)
           aaaTCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTgg                                                                                     <  1:1921363/100‑1 (MQ=255)
           aaaTCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTgg                                                                                     <  2:461779/100‑1 (MQ=255)
            aaTCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGga                                                                                    >  1:98063/1‑100 (MQ=255)
            aaTCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGga                                                                                    >  1:1099488/1‑100 (MQ=255)
                ggTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATg                                                                                >  2:1074758/1‑100 (MQ=255)
                 gTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGt                                                                               <  1:1628264/100‑1 (MQ=255)
                   cAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTAc                                                                             <  2:295007/100‑1 (MQ=255)
                   cAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTAc                                                                             <  1:55876/100‑1 (MQ=255)
                       gcgTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTa                                                                         <  1:1101653/100‑1 (MQ=255)
                         gTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATg                                                                       <  1:202233/100‑1 (MQ=255)
                          tAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGt                                                                      <  2:1139608/100‑1 (MQ=255)
                           aaTGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTa                                                                     <  2:98062/100‑1 (MQ=255)
                             tGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACa                                                                   <  2:320633/100‑1 (MQ=255)
                             tGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACa                                                                   <  1:1832744/100‑1 (MQ=255)
                              gATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAg                                                                  <  1:1022412/100‑1 (MQ=255)
                              gATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAg                                                                  >  2:1978241/1‑100 (MQ=255)
                               aTCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACa                                                                   <  2:1318359/98‑1 (MQ=255)
                               aTCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGa                                                                 >  2:2366015/1‑100 (MQ=255)
                                 cgacgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATc                                                               <  2:1467424/100‑1 (MQ=255)
                                 cgacgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATAATGTACatctc                                                               <  1:1742317/100‑5 (MQ=255)
                                  gacgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCg                                                              >  2:2312779/1‑100 (MQ=255)
                                  gacgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCg                                                              >  2:1366345/1‑100 (MQ=255)
                                  gacgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATAATGTACatctcc                                                              <  1:2439956/100‑6 (MQ=255)
                                   acgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCgg                                                             <  2:1099478/100‑1 (MQ=255)
                                    cgaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATAATGTACatctccac                                                            <  1:1011625/100‑8 (MQ=255)
                                    cgaTAGCAGTGTCGTGATTGGAGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGa                                                            >  2:2648804/1‑100 (MQ=255)
                                     gaTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAg                                                           <  1:1074768/100‑1 (MQ=255)
                                      aTAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAg                                                           <  2:2215545/99‑1 (MQ=255)
                                       tAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTATAGATCGGAgca                                                         >  2:2997956/1‑100 (MQ=255)
                                       tAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgca                                                         <  2:2198612/100‑1 (MQ=255)
                                        aGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgcac                                                        <  1:92086/100‑1 (MQ=255)
                                          cAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgcacgc                                                      <  1:3005622/100‑1 (MQ=255)
                                            gtgtCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgcacgcac                                                    <  2:2081508/100‑1 (MQ=255)
                                            gtgtCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgcacgcac                                                    <  2:2878518/100‑1 (MQ=255)
                                            gtgtCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAgcacgcac                                                    <  2:1140213/100‑1 (MQ=255)
                                             tgtCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCAcc                                                   <  2:1690020/100‑1 (MQ=255)
                                              gtCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCa                                                  >  2:1860292/1‑100 (MQ=255)
                                               tCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCaa                                                 >  2:1238671/1‑100 (MQ=255)
                                                 gTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAata                                               >  1:1100567/1‑100 (MQ=255)
                                                    aTTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATcc                                            <  2:2421616/100‑1 (MQ=255)
                                                     ttGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGGGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCa                                           >  2:2184465/1‑100 (MQ=255)
                                                      tGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAg                                          <  1:1670065/100‑1 (MQ=255)
                                                      tGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAg                                          <  1:2904869/100‑1 (MQ=255)
                                                       ggTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTCCAGATCGGAGCACGCACCAATATCCAgg                                         >  2:631764/1‑100 (MQ=255)
                                                       ggTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAgg                                         <  2:2695866/100‑1 (MQ=255)
                                                        gTGACGTTCGTCTGGCTGATGCTGTGGGGATCTGGCCGCTCATTGTGCTTCGTGCAGATGTACATTATGTCCAGATCGGAGCCCGCCACACTATCCacg                                         >  2:2310265/1‑97 (MQ=255)
                                                        gTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGa                                        >  2:1222842/1‑100 (MQ=255)
                                                            cGTTCGTCTGGCTGATGATGTGGGGATCTGGTCGCTCATTGTGATTCGTGGAGATGTAGATTATGTAGAGATGGGAGCACGCACCAATATCCAGGATGGc                                    >  1:2521545/1‑100 (MQ=255)
                                                            cGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATgg                                     >  2:479792/1‑99 (MQ=255)
                                                            cGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGc                                    <  1:49045/100‑1 (MQ=255)
                                                            cGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGc                                    <  1:1860308/100‑1 (MQ=255)
                                                              ttCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAg                                  <  1:1972107/100‑1 (MQ=255)
                                                                   cTGGCTGATGATGTGGGGATTTAGACGATCATTGTGATTAGTAGAGATGTACATTATGTACAGATAGGAGAACGCACCAATATCAAGGATGGCAGTATGt                             >  2:2077535/1‑100 (MQ=255)
                                                                   cTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGt                             >  2:1002634/1‑100 (MQ=255)
                                                                   cTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGt                             <  1:1451888/100‑1 (MQ=255)
                                                                   cTGGCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGt                             >  2:1652670/1‑100 (MQ=255)
                                                                     ggCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTg                           <  1:2693220/100‑1 (MQ=255)
                                                                      gCTGATGATGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGc                          <  1:174146/100‑1 (MQ=255)
                                                                         gatgatGTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATg                       >  2:2948577/1‑100 (MQ=255)
                                                                             atgTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCAc                   <  1:1947218/100‑1 (MQ=255)
                                                                             atgTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCAc                   <  2:2545412/100‑1 (MQ=255)
                                                                             atgTGGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCAc                   <  2:1194656/100‑1 (MQ=255)
                                                                             atgTGGGGATCTGGCCGCCCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCAc                   <  1:2724516/100‑1 (MQ=255)
                                                                               gtgGGGATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTc                 >  2:980835/1‑100 (MQ=255)
                                                                                 ggggATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCAt               >  2:2777457/1‑100 (MQ=255)
                                                                                 ggggATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCAt               >  2:1161881/1‑100 (MQ=255)
                                                                                 ggggATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCAt               <  2:1133534/100‑1 (MQ=255)
                                                                                   ggATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATaa             >  2:1894628/1‑100 (MQ=255)
                                                                                   ggATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATaa             >  2:1894152/1‑100 (MQ=255)
                                                                                    gATCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATaaa            <  1:2366036/100‑1 (MQ=255)
                                                                                      tCTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATc          >  1:2869444/1‑100 (MQ=255)
                                                                                       cTGGCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATcc         >  1:2170843/1‑100 (MQ=255)
                                                                                         ggCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTc       >  2:2672540/1‑100 (MQ=255)
                                                                                         ggCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTc       >  2:2224438/1‑100 (MQ=255)
                                                                                         ggCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTc       >  1:2966343/1‑100 (MQ=255)
                                                                                          gCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCg      <  2:1017664/100‑1 (MQ=255)
                                                                                          gCCGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCg      >  2:369670/1‑100 (MQ=255)
                                                                                           ccGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGACACTCATAAATCCTCGt     <  1:2090290/100‑1 (MQ=255)
                                                                                            cGCTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCGTa    <  1:629923/100‑1 (MQ=255)
                                                                                              cTCATTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCGTACa  >  2:424053/1‑100 (MQ=255)
                                                                                                 |                                                                                                
TCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGACGTTCGTCTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAATATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCGTACA  >  NC_000913/3429265‑3429458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A