Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F169 I0 R1 76 156.9 7610945 95.9% 7298896 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,436,256 G→A 100% A350A (GCG→GCA)  rsmB → 16S rRNA m(5)C967 methyltransferase, SAM‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,436,2560GA99.4% 528.6 / ‑4.7 160A350A (GCG→GCA) rsmB16S rRNA m(5)C967 methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (78/80);  total (80/80)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01

Only 100 of 163 total aligned reads displayed.

GCATTTTATTAGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCGCAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAAGAGAAT  >  NC_000913/3436159‑3436352
                                                                                                 |                                                                                                
   ttttATTAGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAAtt                                                                                             <  1:2823420/100‑1 (MQ=255)
     ttattaGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGc                                                                                           <  1:1613515/100‑1 (MQ=255)
      tattaGATGCGGCTTGTTCAGCAACCGGTTTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGGTCGCGACATCCCGGCACTCCCCCAATTGc                                                                                           >  1:3171768/1‑99 (MQ=255)
       attaGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAg                                                                                         >  2:1661175/1‑100 (MQ=255)
       attaGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAg                                                                                         >  1:2644465/1‑100 (MQ=255)
       attaGATGCGCCTTGTTCAGCAACCGGTGTGATTCGGCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAg                                                                                         <  1:3679329/100‑1 (MQ=255)
         taGATGTGCCTTGTTCAGCAACCGGTGTGATGCGTCGCCATCCAGATATTAAATGGTTGCGTCGCGAGCGCGATATCCCGGACCTCGCACAATTGc                                                                                           <  1:956011/96‑1 (MQ=255)
         taGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCTGGAACTCGCACAATTGCAGTc                                                                                       >  1:506887/1‑100 (MQ=255)
         taGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTc                                                                                       >  2:2008733/1‑100 (MQ=255)
         taGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTc                                                                                       <  1:2573996/100‑1 (MQ=255)
           gATGCGCCTTGTTCAGCAACCGGTGTGATTCGTTGCCATACAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGt                                                                                        >  1:752031/1‑97 (MQ=255)
             tgcaacTTGTTCAGCAACCAGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCAATCGCGATATCCCGGAACTCACACAATTGCatt                                                                                        >  1:1683732/6‑93 (MQ=255)
             tGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGaa                                                                                   <  1:3481828/100‑1 (MQ=255)
             tGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGaa                                                                                   >  1:2963282/1‑100 (MQ=255)
              gcgcCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGaaa                                                                                  <  1:601264/100‑1 (MQ=255)
               cgcCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAAt                                                                                 <  2:2292805/100‑1 (MQ=255)
                gcCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAAtt                                                                                >  1:1779901/1‑100 (MQ=255)
                gcCTTGTTCAGCAACCGGTGTGATTCGTCGCCACCCAGATATTAAATAGTTACGTCGCGATCGCGATATCCCGGAACTCGAACAATTGCAGTCTGAAAtt                                                                                >  1:241143/1‑100 (MQ=255)
                 ccTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATtc                                                                               >  1:1663610/1‑100 (MQ=255)
                  cTTGTTCAGCAACCGGTGTGATTCGTGGCCATCCAGATATTCAATGGTTACGGCGCGATCGCGGTATCGCGGTACTCGCACAATAGCAGTCTGACATtc                                                                               >  1:3429454/1‑99 (MQ=255)
                  cTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATtct                                                                              >  2:620093/1‑100 (MQ=255)
                   ttGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATtctc                                                                             >  2:2825812/1‑100 (MQ=255)
                       tCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACg                                                                         >  2:3054124/1‑100 (MQ=255)
                       tCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACg                                                                         >  2:80470/1‑100 (MQ=255)
                       tCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACg                                                                         <  1:1644953/100‑1 (MQ=255)
                       tCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACg                                                                         >  2:578402/1‑100 (MQ=255)
                        cAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGc                                                                        >  1:1492096/1‑100 (MQ=255)
                         aGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGcc                                                                       >  2:3709546/1‑100 (MQ=255)
                          gCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCa                                                                      >  1:3164338/1‑100 (MQ=255)
                          gCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATCCTCGACGCCa                                                                      >  1:1429875/1‑100 (MQ=255)
                               cGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTgg                                                                 <  2:3276738/100‑1 (MQ=255)
                                  tgtgATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAACTTCTCGACGCCATTTGGCCg                                                              <  1:2318811/100‑1 (MQ=255)
                                  tgtgATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCg                                                              <  2:2801741/100‑1 (MQ=255)
                                   gtgATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGc                                                             >  1:3030756/1‑100 (MQ=255)
                                      aTTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAtt                                                          <  1:1846879/100‑1 (MQ=255)
                                      aTTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAtt                                                          >  2:1323745/1‑100 (MQ=255)
                                      aTTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAtt                                                          >  2:3654767/1‑100 (MQ=255)
                                       ttCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAttt                                                         >  2:471248/1‑100 (MQ=255)
                                       ttCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAttt                                                         >  2:1681302/1‑100 (MQ=255)
                                       ttCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCAttt                                                         >  1:10534/1‑100 (MQ=255)
                                          gtcgCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTaaa                                                      >  2:39882/1‑100 (MQ=255)
                                            cgCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTaaa                                                      <  1:2582202/98‑1 (MQ=255)
                                               cgtCCAGATATTAGATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCg                                                 >  2:2573882/3‑100 (MQ=255)
                                               cATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCg                                                 >  2:123738/1‑100 (MQ=255)
                                               cATCCAGATATTAAATCGCTCCGTCGCTATCGCGATATCCCGGATCTCTCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCg                                                 <  1:872038/100‑1 (MQ=255)
                                                aTCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGGGGGTTGGCCGCATTTAAAAACCgg                                                <  2:48011/100‑1 (MQ=255)
                                                aTCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCgg                                                <  1:2168935/100‑1 (MQ=255)
                                                aTCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCgg                                                >  2:1543033/1‑100 (MQ=255)
                                                  ccAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTg                                              <  2:955344/100‑1 (MQ=255)
                                                  ccAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTg                                              >  2:2736706/1‑100 (MQ=255)
                                                  ccAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTg                                              >  1:3511819/1‑100 (MQ=255)
                                                   cAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAATTTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTgg                                             <  1:2030079/100‑1 (MQ=255)
                                                   cAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTgg                                             >  2:2954574/1‑100 (MQ=255)
                                                   cAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTgg                                             >  1:2921905/1‑100 (MQ=255)
                                                   cAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTgg                                             <  2:3088543/100‑1 (MQ=255)
                                                    aGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGa                                            >  2:1627708/1‑100 (MQ=255)
                                                       tatTAAATGGTTACGTCGCGATCGCGATATCCCGGAAGTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAAct                                         >  1:2026785/1‑100 (MQ=255)
                                                        atTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAActc                                        >  1:343245/1‑100 (MQ=255)
                                                        atTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAActc                                        <  2:3396238/100‑1 (MQ=255)
                                                        atTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAActc                                        >  1:3271147/1‑100 (MQ=255)
                                                          tAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTg                                      >  2:3029227/1‑100 (MQ=255)
                                                          tAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTg                                      >  2:2582102/1‑100 (MQ=255)
                                                          tAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGAAGCCATTTGGCCGCATTTAAAAACCGGTGGAAATCTg                                      <  1:3738272/100‑1 (MQ=255)
                                                           aaaTGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTgg                                     <  2:3253674/100‑1 (MQ=255)
                                                            aaTGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGt                                    <  2:1216573/100‑1 (MQ=255)
                                                             aTGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTc                                   >  1:1791236/1‑100 (MQ=255)
                                                             aTGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTc                                   <  2:82701/100‑1 (MQ=255)
                                                              tGGTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCt                                  >  1:5145/1‑100 (MQ=255)
                                                                gTTACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTAt                                >  2:2874894/1‑100 (MQ=255)
                                                                 ttACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATg                               <  1:2052807/100‑1 (MQ=255)
                                                                  tACGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGc                              >  1:3642099/1‑100 (MQ=255)
                                                                    cGTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCAGTGGAACTCTGGTCTATGCCa                            >  2:1589399/1‑100 (MQ=255)
                                                                     gTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCAc                           <  2:2376548/100‑1 (MQ=255)
                                                                     gTCGCGATCGCGATATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCAc                           <  2:1078623/100‑1 (MQ=255)
                                                                      tcgcgatctcgaTATCCCGGAAGTCGCACAAATGCAGTCTGATATTCTCGACTCCATTTGGTCGCATTTAAAAACCGGTGGAACTCTGGTCTATg                               <  1:1851787/95‑1 (MQ=255)
                                                                      tcgcgatcgcgaTATCCCGGAACTTGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCAcc                          <  1:1678343/100‑1 (MQ=255)
                                                                      tcgcgatcgcgaTATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCAcc                          <  1:2352145/100‑1 (MQ=255)
                                                                       cgcgatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCt                         >  1:1837169/1‑100 (MQ=255)
                                                                       cgcgatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCt                         >  1:1936319/1‑100 (MQ=255)
                                                                         cgatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGt                       >  2:3186066/1‑100 (MQ=255)
                                                                          gatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGtt                      >  1:3570541/1‑100 (MQ=255)
                                                                          gatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGtt                      >  1:1708657/1‑100 (MQ=255)
                                                                          gatcgcgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGtt                      >  2:1364167/1‑100 (MQ=255)
                                                                               cgatATCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGgtg                 <  1:994570/100‑1 (MQ=255)
                                                                                 atatCCCGGACCTAGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGtt               <  1:2872239/100‑1 (MQ=255)
                                                                                   accccGGAACTCGCACAATGGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTAc             <  2:2072597/98‑1 (MQ=255)
                                                                                    tCCCGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTAcc            >  2:1775095/1‑100 (MQ=255)
                                                                                     cccGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCg           <  2:1779908/100‑1 (MQ=255)
                                                                                      ccGGAACTCGCACAATTGCAGTCTGAAATTCTCGCCGCCATTTGCCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTAc             >  1:778947/1‑97 (MQ=255)
                                                                                      ccGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCgg          >  1:2088259/1‑100 (MQ=255)
                                                                                      ccGGAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCgg          <  2:3238378/100‑1 (MQ=255)
                                                                                        ggAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGaa        <  2:2216867/100‑1 (MQ=255)
                                                                                         gAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAag       <  2:2049226/100‑1 (MQ=255)
                                                                                         gAACTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAag       <  2:1188836/100‑1 (MQ=255)
                                                                                           aCTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAagag     <  2:506889/100‑1 (MQ=255)
                                                                                           aCTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAagag     <  1:1543027/100‑1 (MQ=255)
                                                                                            cTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAAgaga    >  2:2968153/1‑100 (MQ=255)
                                                                                            cTCGCACAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCGGGTCTATGCCACCTGTTCGGTGTTACCGGAagag     <  1:683097/99‑1 (MQ=255)
                                                                                              cgcaCAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAAGAGAAt  >  2:578559/1‑100 (MQ=255)
                                                                                              cgcaCAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAAGAGAAt  <  1:564021/100‑1 (MQ=255)
                                                                                                 |                                                                                                
GCATTTTATTAGATGCGCCTTGTTCAGCAACCGGTGTGATTCGTCGCCATCCAGATATTAAATGGTTACGTCGCGATCGCGATATCCCGGAACTCGCGCAATTGCAGTCTGAAATTCTCGACGCCATTTGGCCGCATTTAAAAACCGGTGGAACTCTGGTCTATGCCACCTGTTCGGTGTTACCGGAAGAGAAT  >  NC_000913/3436159‑3436352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A