Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I1 R1 186 136.5 6958264 92.1% 6408561 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,627,837 A→T I175F (ATC→TTC)  nadR → trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,627,8370AT100.0% 415.1 / NA 121I175F (ATC→TTC) nadRtrifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (56/65);  total (56/65)

Only 100 of 127 total aligned reads displayed.

CAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTA  >  NC_000913/4627740‑4627930
                                                                                                 |                                                                                             
 aaCGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgttct                                                                                            <  2:3032399/100‑1 (MQ=255)
   cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTac                                                                                          <  2:1901821/100‑1 (MQ=255)
   cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTac                                                                                          <  2:416163/100‑1 (MQ=255)
   cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTac                                                                                          <  1:1402186/100‑1 (MQ=255)
   cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTac                                                                                          <  1:2483620/100‑1 (MQ=255)
     aaGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTacac                                                                                        <  2:186166/100‑1 (MQ=255)
      agagGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACAcc                                                                                       <  2:3356320/100‑1 (MQ=255)
       gagGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCt                                                                                      >  1:2673346/1‑100 (MQ=255)
         gggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCg                                                                                    >  2:1025098/1‑100 (MQ=255)
         gggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCg                                                                                    <  2:316875/100‑1 (MQ=255)
         gggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCg                                                                                    <  2:1834833/100‑1 (MQ=255)
          ggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCgg                                                                                   <  2:2705213/100‑1 (MQ=255)
           gCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGga                                                                                  >  1:2845998/1‑100 (MQ=255)
           gCATGGAGCCGTATCCGAACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGATAAAAAAAAAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGga                                                                                  <  1:3017270/100‑1 (MQ=255)
            cATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaa                                                                                 >  2:694280/1‑100 (MQ=255)
            cATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGAATCCAGCCGGATCTGTTCTACACCTCGgaa                                                                                 <  2:2858295/100‑1 (MQ=255)
             aTGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaag                                                                                >  2:2498915/1‑100 (MQ=255)
             aTGGAGCCGTATCCGCACGGATGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaag                                                                                <  2:2726478/100‑1 (MQ=255)
               ggAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaagaa                                                                              >  2:2674287/1‑100 (MQ=255)
               ggAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaagaa                                                                              >  1:2844681/1‑100 (MQ=255)
                     gTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGAt                                                                        <  2:429560/100‑1 (MQ=255)
                       agccGCAAGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATgc                                                                      <  1:2229084/98‑1 (MQ=255)
                        tCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATgcg                                                                     <  2:220433/100‑1 (MQ=255)
                         ccGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATgcgc                                                                    <  2:1199576/100‑1 (MQ=255)
                          cGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGcc                                                                   <  1:87653/100‑1 (MQ=255)
                          cGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGcc                                                                   >  1:2621305/1‑100 (MQ=255)
                          cGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTATACACCTCGGAAGAAGCCGATGCGcc                                                                   >  1:2120749/1‑100 (MQ=255)
                            cACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCcac                                                                 <  1:3396411/100‑1 (MQ=255)
                            cACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCcac                                                                 <  2:1231155/100‑1 (MQ=255)
                              cGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAg                                                               <  1:2498882/100‑1 (MQ=255)
                               ggCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGt                                                              <  2:2192609/100‑1 (MQ=255)
                                gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGta                                                             <  1:3468436/100‑1 (MQ=255)
                                 cTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGtat                                                            >  2:2185473/1‑100 (MQ=255)
                                 cTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTAGGAAGAAGCCGATGCGCCACAGtat                                                            <  2:3101471/100‑1 (MQ=255)
                                  tGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGtata                                                           <  1:2528463/100‑1 (MQ=255)
                                  tGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGtata                                                           <  2:713155/100‑1 (MQ=255)
                                   gggATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTatat                                                          >  1:68988/1‑100 (MQ=255)
                                     gATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATgg                                                        <  1:372803/100‑1 (MQ=255)
                                         tgtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACa                                                    <  2:160729/100‑1 (MQ=255)
                                         tgtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACa                                                    >  1:1130805/1‑100 (MQ=255)
                                         tgtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCGCGGAAGAAGCCGATGCGCCACAGTATATGGAACa                                                    >  2:888322/1‑100 (MQ=255)
                                            ggAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCt                                                 >  1:1693516/1‑100 (MQ=255)
                                            ggAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCt                                                 >  1:2720843/1‑100 (MQ=255)
                                            ggAGAAACGGCATCAAAAAGTTTATGGCCGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACa                                                    >  1:1497420/1‑97 (MQ=255)
                                             gAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTg                                                <  2:613639/100‑1 (MQ=255)
                                               gCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTggg                                              >  2:2648263/1‑100 (MQ=255)
                                               gCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCACGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTg                                                <  1:3413559/98‑1 (MQ=255)
                                               gCAACGGCATCAAAAAGTTTATGGCCGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTggg                                              <  1:3202109/100‑1 (MQ=255)
                                                cAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGACGAAGCCGATGCGCCACAGTATATGGAACATCTgggg                                             <  2:2444792/100‑1 (MQ=255)
                                                cAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTgggg                                             <  1:3225531/100‑1 (MQ=255)
                                                cAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTgggg                                             <  2:1224394/100‑1 (MQ=255)
                                                 aaCGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGa                                            >  1:2578172/1‑100 (MQ=255)
                                                   cGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATc                                          >  2:1840173/1‑100 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAATCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                         <  2:2450648/100‑1 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                         <  2:836252/100‑1 (MQ=255)
                                                     gCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCga                                        >  2:173244/1‑100 (MQ=255)
                                                      cATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCgag                                       >  2:873470/1‑100 (MQ=255)
                                                       aTCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCgaga                                      >  1:528570/1‑100 (MQ=255)
                                                        tCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGAc                                     >  2:2814750/1‑100 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCCCAGTATATGGAACATCTGGGGATCGAGAc                                     >  2:1391350/1‑99 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGAc                                     <  1:920777/99‑1 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACg                                    >  1:2513169/1‑100 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACg                                    >  2:1533350/1‑100 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACg                                    >  2:3214092/1‑100 (MQ=255)
                                                          tcttccgatctGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACgg                                   <  2:2381282/90‑1 (MQ=255)
                                                            aaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTg                                 >  2:263116/1‑100 (MQ=255)
                                                              aGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCt                               <  2:1104529/100‑1 (MQ=255)
                                                              aGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCt                               >  1:1810821/1‑100 (MQ=255)
                                                              aGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCt                               <  1:359127/100‑1 (MQ=255)
                                                              aGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCt                               >  2:278954/1‑100 (MQ=255)
                                                                tttATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTgg                             <  2:1740157/100‑1 (MQ=255)
                                                                tttATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTgg                             <  1:584846/100‑1 (MQ=255)
                                                                  tATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTc                           <  1:1359385/100‑1 (MQ=255)
                                                                  tATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTc                           <  1:701026/100‑1 (MQ=255)
                                                                  tATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTc                           <  1:1313966/100‑1 (MQ=255)
                                                                   aTGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCg                          >  2:744092/1‑100 (MQ=255)
                                                                     ggCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACCGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCg                          >  2:1294233/1‑98 (MQ=255)
                                                                     ggCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGAt                        >  1:1323049/1‑100 (MQ=255)
                                                                     ggCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGAt                        <  1:800775/100‑1 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATc                       <  2:2578206/100‑1 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATc                       >  1:1367347/1‑100 (MQ=255)
                                                                        tgtagaacagATCCGGCTGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCg                     >  2:2004909/10‑100 (MQ=255)
                                                                        tGAAAAAGGGATCCAGCCGGACCCCTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCg                     >  2:44160/1‑100 (MQ=255)
                                                                         gtagaacagATCCGGCTGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGa                    >  2:692112/9‑100 (MQ=255)
                                                                         gAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGa                    >  2:186623/1‑100 (MQ=255)
                                                                          aaaaaGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGaa                   <  1:3449841/100‑1 (MQ=255)
                                                                           aaaaGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGCATCGAGACGGTGCGGGTCGATCCGaaa                  >  2:1649767/1‑100 (MQ=255)
                                                                            aaaGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAAc                 <  1:2308516/100‑1 (MQ=255)
                                                                             aaGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACg                <  2:2854376/100‑1 (MQ=255)
                                                                                ggATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTAc             <  1:1222736/100‑1 (MQ=255)
                                                                                 gATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTAcc            <  1:87942/100‑1 (MQ=255)
                                                                                 gATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTAcc            <  2:1873257/100‑1 (MQ=255)
                                                                                  aTCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCt           >  2:2848582/1‑100 (MQ=255)
                                                                                   tCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCtt          <  2:2621341/100‑1 (MQ=255)
                                                                                       gCCGGATCTGTTCTACACCTCGGAAGAAGCCGTTGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGTAACGTACCTTTAt       >  1:1605421/1‑99 (MQ=255)
                                                                                       gCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg      >  2:2063473/1‑100 (MQ=255)
                                                                                       gCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg      <  2:1095728/100‑1 (MQ=255)
                                                                                           gatctgttctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGATGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTa  <  2:2417514/100‑1 (MQ=255)
                                                                                           gatctgttctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTa  <  2:2809300/100‑1 (MQ=255)
                                                                                           gatctgttctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTa  <  1:1124933/100‑1 (MQ=255)
                                                                                                 |                                                                                             
CAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTA  >  NC_000913/4627740‑4627930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A