Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,627,837 A→T 100% I175F (ATC→TTC)  nadR → trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,627,8370AT96.7% 300.1 / 0.5 91I175F (ATC→TTC) nadRtrifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base A (1/2);  new base T (40/48);  total (41/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.63e-01

CAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATC  >  NC_000913/4627740‑4627932
                                                                                                 |                                                                                               
cAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgttc                                                                                               <  2:2412049/100‑1 (MQ=255)
  aCGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTa                                                                                             <  2:1793008/100‑1 (MQ=255)
    gAAGAGGGGATGGAGCCGTATCCTCACGGCTGGGATGTGGTGAGTAACGTCATCAAAAATTTTATGGCTGAAAAAGGGATCCAGCCGgatctgttct                                                                                              <  2:1650020/97‑1 (MQ=255)
        agGGCATGGAGCCGTATCCGCACGGCTGGGATGTGGGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTc                                                                                       <  2:2101474/100‑1 (MQ=255)
           atctGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGga                                                                                    <  1:1107659/97‑1 (MQ=255)
             aTGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaag                                                                                  <  1:1182177/100‑1 (MQ=255)
             aTGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaag                                                                                  <  1:2285870/100‑1 (MQ=255)
              tGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaan                                                                                  <  2:1514401/99‑2 (MQ=255)
              tGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaaga                                                                                 <  1:1961264/100‑1 (MQ=255)
               ggAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaagat                                                                                >  2:1107651/1‑99 (MQ=255)
               ggAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGgaagaa                                                                                >  1:2017090/1‑100 (MQ=255)
                 aGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGc                                                                              <  1:2266302/100‑1 (MQ=255)
                  gCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGcc                                                                             >  2:57540/1‑100 (MQ=255)
                   ccgtttcttcACGGCTGGGATGTGGGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATGCAGCCGGATCTGTTCTACACCTCGGAAGAAGcc                                                                             <  1:370929/90‑1 (MQ=255)
                   ccGTATCCGTACGACTGGGTTGTGTGGAGCATCGGCATCAAAAAGTTTATGGCTGAAAATGGGAGCCAGCCGGATCTGTTCTACACCTCGTAAGAAGcc                                                                             <  2:998339/99‑1 (MQ=255)
                    cGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGa                                                                           >  1:1934374/1‑100 (MQ=255)
                     gTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGAt                                                                          <  1:501506/100‑1 (MQ=255)
                          cGCACGGCTGGGATGTGTGGAGCAACTGCATCAAAAAGTTTATGTCTGAAAAAGGGATCCAGCCCGATCTGTTCTACACCTCGGAAGAAGCCGATGCGcc                                                                     <  2:1262290/100‑1 (MQ=255)
                            cACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCcac                                                                   <  1:938844/100‑1 (MQ=255)
                              cGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAg                                                                 <  1:2048550/100‑1 (MQ=255)
                                tcTGGGATGTGTGAAACACCGATATCAAAAAGTTTATGGCCGAAAAAGGCATCCAGCCGGATCTGTTCTACACCCCTGAAGAAGCCGATGCGACACAGta                                                               <  2:1395954/99‑1 (MQ=255)
                                gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGta                                                               <  2:782449/100‑1 (MQ=255)
                                gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGta                                                               <  1:676424/100‑1 (MQ=255)
                                 cTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGtat                                                              <  1:692744/100‑1 (MQ=255)
                                 cTGGGATGTGTGGAGCAACGGCATCAAAAAGAAAAAAAAAAAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGta                                                               <  2:2019092/99‑1 (MQ=255)
                                  tGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGtata                                                             <  2:1061334/100‑1 (MQ=255)
                                    ggATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCCCAGTATATg                                                           >  2:1453760/1‑100 (MQ=255)
                                    ggATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATg                                                           <  2:2159038/100‑1 (MQ=255)
                                    ggATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATg                                                           >  2:1453680/1‑100 (MQ=255)
                                     gATGTGTGGAGCAACGGCATCAAAAAGTTTATTGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATg                                                           <  1:2305321/99‑1 (MQ=255)
                                     gATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATgg                                                          >  2:2477605/1‑100 (MQ=255)
                                      attcgtcgAGCATAGGCACCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATg                                                           <  1:2305278/91‑1 (MQ=255)
                                      aTGTGTGGAGCAACGGCATCAAAAGCTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCGCGGAAGAAGCCGATGCGCCACAGTATATGGa                                                         <  2:1067019/100‑1 (MQ=255)
                                      aTGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGa                                                         <  2:1191110/100‑1 (MQ=255)
                                        gtgtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAAc                                                       >  1:317985/1‑100 (MQ=255)
                                         tgtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACa                                                      >  1:636415/1‑100 (MQ=255)
                                         tgtgGAGCAACGGCATCAAAAAGTTTAGGGCGGAAAAAGGGATCCAGCCGGAGCGGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAAc                                                       <  2:1482000/99‑1 (MQ=255)
                                          gtgGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACAt                                                     >  1:2228468/1‑100 (MQ=255)
                                            ggAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCt                                                   >  2:151398/1‑100 (MQ=255)
                                            ggAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCt                                                   >  1:70633/1‑100 (MQ=255)
                                              aGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTgg                                                 <  2:1441782/100‑1 (MQ=255)
                                               gCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTggg                                                <  2:2269624/100‑1 (MQ=255)
                                               gCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTggg                                                <  1:2073914/100‑1 (MQ=255)
                                                   cGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGTAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATc                                            <  1:2032427/100‑1 (MQ=255)
                                                   cGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATc                                            <  1:693282/100‑1 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                           <  1:708212/100‑1 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                           <  1:2457193/100‑1 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                           >  2:1572397/1‑100 (MQ=255)
                                                    ggCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCg                                           <  2:1545883/100‑1 (MQ=255)
                                                      cATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCgan                                         <  2:1415913/100‑2 (MQ=255)
                                                       aTCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCgaga                                        <  1:1507884/100‑1 (MQ=255)
                                                        tCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGAc                                       >  1:2116213/1‑100 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACCTCTGGGGATCGAGACg                                      >  1:1492374/1‑100 (MQ=255)
                                                         cAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACg                                      >  1:888363/1‑100 (MQ=255)
                                                          aaaaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACgg                                     >  1:2405985/1‑100 (MQ=255)
                                                          aaaaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACgg                                     >  2:2184130/1‑100 (MQ=255)
                                                          aaaaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAACCCGATCCGCCACAGTATATGGAACATCTGGGGATCGAGACg                                      >  2:2102241/1‑99 (MQ=255)
                                                          aaaaaGTGTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACgg                                     >  2:2510619/1‑100 (MQ=255)
                                                           aaaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCGACAGTATATGGAACATCTGGGGAGCGAGACGGt                                    >  2:922997/1‑100 (MQ=255)
                                                            aaaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGAGATCggaagagcg                                   >  2:1267124/1‑92 (MQ=255)
                                                             aaGTTTATGGTTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGc                                  <  2:1683196/100‑1 (MQ=255)
                                                             aaGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGc                                  <  1:2102762/100‑1 (MQ=255)
                                                              aGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCt                                 <  1:1263985/100‑1 (MQ=255)
                                                                 ttATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGt                              >  1:2116900/1‑100 (MQ=255)
                                                                  tATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTc                             <  2:274029/100‑1 (MQ=255)
                                                                    tGGCTGAAAAAGGGATCCCGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGa                           <  2:1289390/100‑1 (MQ=255)
                                                                    tGGCTGAAAAAGGGATCCAGCGGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATTGAACATCAGGGGATCGAGACGGTGATGATCGa                           >  2:621653/1‑100 (MQ=255)
                                                                    tGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGa                           >  2:382651/1‑100 (MQ=255)
                                                                     ggCTGAAAAAGGGATCCATCCGGATCTGTTCTACAGCGCGGAAGAAGCCGACGCGCCACAGTATACGGAACATCCGGGGATCGAGACGGCGCTGATCg                            >  2:570027/1‑98 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATc                         >  1:2262821/1‑100 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATc                         >  2:2187439/1‑100 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATc                         >  2:989226/1‑100 (MQ=255)
                                                                      gCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGCGCTGGTCg                            >  2:1407163/1‑97 (MQ=255)
                                                                       cTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATcc                        >  2:374001/1‑100 (MQ=255)
                                                                       cTGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATcc                        <  1:1250977/100‑1 (MQ=255)
                                                                        tGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCg                       >  1:580187/1‑100 (MQ=255)
                                                                        tGAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCg                       <  2:2211890/100‑1 (MQ=255)
                                                                         gAAAAAGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGa                      >  1:1029731/1‑100 (MQ=255)
                                                                          aaaaaGGGATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGaa                     <  1:2442538/100‑1 (MQ=255)
                                                                             aaGGGATCCAGCCGGATCTATTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGCTCGAGACGGTGCTGGTCGATCCGAAAc                   >  2:2325980/1‑99 (MQ=255)
                                                                               gggATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTa                >  2:1777751/1‑100 (MQ=255)
                                                                                ggATCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTAc               >  2:1932794/1‑100 (MQ=255)
                                                                                  aTCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCt             <  1:373736/100‑1 (MQ=255)
                                                                                  aTCCAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCt             >  1:2421674/1‑100 (MQ=255)
                                                                                    ccAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCttt           >  1:1828710/1‑100 (MQ=255)
                                                                                     cAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTa          >  2:2104216/1‑100 (MQ=255)
                                                                                     cAGCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTa          >  1:759768/1‑100 (MQ=255)
                                                                                       gCCGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg        >  2:2406877/1‑100 (MQ=255)
                                                                                        ccGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGa       <  1:1441375/100‑1 (MQ=255)
                                                                                        ccGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGa       <  1:661933/100‑1 (MQ=255)
                                                                                         cGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAg      <  1:1932808/100‑1 (MQ=255)
                                                                                         cGGATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAg      <  1:472106/100‑1 (MQ=255)
                                                                                          ggATCTGTTCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGt     <  2:1300521/100‑1 (MQ=255)
                                                                                             tctgttctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATc  <  2:2066511/100‑1 (MQ=255)
                                                                                                 |                                                                                               
CAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATC  >  NC_000913/4627740‑4627932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A