mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 16.6% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 16.8% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 11,127 | C→G | 17.6% | S77T (AGT→ACT) | yaaW ← | UPF0174 family protein |
| RA | 36,231 | T→C | 100% | intergenic (‑69/+40) | caiD ← / ← caiC | carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase |
| RA | 53,012 | A→G | 100% | G135G (GGT→GGC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 78,830 | T→A | 15.3% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 15.3% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 88,208 | A→T | 100% | T61S (ACA→TCA) | cra → | transcriptional repressor‑activator for carbon metabolism |
| RA | 107,553 | (T)9→8 | 100% | intergenic (+79/‑152) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 129,360 | G→T | 100% | intergenic (+24/+47) | lpd → / ← yacH | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase/DUF3300 family protein |
| RA | 151,519 | A→C | 15.6% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 15.8% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 160,736 | A→T | 100% | intergenic (‑132/+46) | dksA ← / ← sfsA | transcriptional regulator of rRNA transcription; DnaK suppressor protein/sugar fermentation stimulation protein A |
| RA | 162,973 | G→A | 100% | C290Y (TGT→TAT) | hrpB → | putative ATP‑dependent helicase |
| RA | 178,902 | C→T | 100% | L84L (TTG→TTA) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 179,327 | A→T | 100% | I31F (ATC→TTC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
| RA | 179,442 | A→T | 100% | H69L (CAC→CTC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
| JC | 190,553 | Δ14 bp | 100% | coding (680‑693/726 nt) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 194,128 | C→T | 100% | P203L (CCG→CTG) | dxr → | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| RA | 216,568 | C→T | 100% | A146T (GCC→ACC) | yaeF ← | putative lipoprotein |
| RA | 232,196 | G→T | 100% | G91C (GGC→TGC) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 236,541 | C→T | 100% | R159* (CGA→TGA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 252,589 | G→C | 18.4% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 15.3% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 254,223 | A→T | 15.1% | intergenic (+21/+36) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 265,418 | A→G | 100% | R42R (CGT→CGC) | ykfF ← | CP4‑6 prophage; uncharacterized protein |
| RA | 281,581 | G→A | 100% | R135W (CGG→TGG) | yagA ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 362,884 | A→G | 100% | L99S (TTA→TCA) | lacY ← | lactose permease |
| RA | 364,024 | C→T | 100% | R761H (CGC→CAC) | lacZ ← | beta‑D‑galactosidase |
| RA | 367,830 | G→A | 100% | Y197Y (TAC→TAT) | mhpR ← | mhp operon transcriptional activator |
| RA | 383,477 | G→A | 100% | G153G (GGC→GGT) | yaiP ← | putative family 2 glycosyltransferase |
| RA | 400,214 | T→C | 100% | D237G (GAC→GGC) | ddlA ← | D‑alanine‑D‑alanine ligase A |
| RA | 416,389 | (C)5→4 | 100% | coding (564/1203 nt) | sbcD ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 428,188 | G→T | 100% | R181L (CGC→CTC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 459,256 | T→C | 100% | D123D (GAT→GAC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 459,642 | A→G | 100% | E252G (GAA→GGA) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 478,750 | C→T | 16.1% | intergenic (‑133/+31) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,757 | T→C | 15.4% | intergenic (‑140/+24) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,759 | A→G | 16.4% | intergenic (‑142/+22) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 480,236 | C→G | 15.5% | E25Q (GAG→CAG) | hha ← | modulator of gene expression, with H‑NS |
| RA | 480,237 | C→G | 15.5% | L24L (CTG→CTC) | hha ← | modulator of gene expression, with H‑NS |
| RA | 497,139:1 | (T)5→6 | 100% | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| RA | 520,993 | T→G | 100% | V193G (GTC→GGC) | ybbP → | putative ABC transporter permease |
| RA | 532,380 | A→G | 100% | intergenic (‑159/‑71) | allS ← / → allA | allD operon transcriptional activator/ureidoglycolate lyase, releasing urea |
| RA | 584,262:1 | (A)7→8 | 100% | coding (582/750 nt) | appY → | global transcriptional activator; DLP12 prophage |
| RA | 649,964:1 | +G | 100% | coding (527/909 nt) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 661,369 | T→C | 100% | N4D (AAT→GAT) | ybeF ← | LysR family putative transcriptional regulator |
| RA | 662,636 | T→G | 100% | T3P (ACC→CCC) | ybeD ← | UPF0250 family protein |
| RA | 691,390 | G→C | 16.2% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 700,805 | A→T | 100% | C264S (TGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 710,170 | C→T | 18.8% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 18.6% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 712,150 | A→T | 100% | L218Q (CTG→CAG) | ybfF ← | acyl‑CoA esterase |
| RA | 720,946 | C→T | 100% | intergenic (+106/+110) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 750,896 | Δ1 bp | 100% | coding (1274/2448 nt) | ybgQ ← | putative outer membrane protein |
| RA | 772,209 | C→A | 100% | T251N (ACC→AAC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 834,352 | A→T | 100% | Q428L (CAG→CTG) | dinG → | ATP‑dependent DNA helicase |
| RA | 851,094 | G→A | 100% | P502S (CCG→TCG) | opgE ← | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 860,151 | A→G | 17.3% | intergenic (‑123/+23) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,154 | A→T | 17.7% | intergenic (‑126/+20) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,157 | C→T | 16.3% | intergenic (‑129/+17) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 882,722 | G→A | 100% | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| RA | 894,155 | T→G | 100% | D124E (GAT→GAG) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 905,720 | C→A | 100% | L270M (CTG→ATG) | amiD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase, Zn‑dependent; OM lipoprotein |
| RA | 931,952 | C→T | 100% | V33V (GTG→GTA) | trxB ← | thioredoxin reductase, FAD/NAD(P)‑binding |
| RA | 933,387 | C→T | 100% | A55V (GCC→GTC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 949,741 | Δ1 bp | 15.1% | coding (74/591 nt) | ycaK → | putative NAD(P)H‑dependent oxidoreductase |
| RA | 949,745:1 | +G | 15.1% | coding (78/591 nt) | ycaK → | putative NAD(P)H‑dependent oxidoreductase |
| RA | 966,368 | A→G | 100% | A683A (GCA→GCG) | ycaI → | ComEC family inner membrane protein |
| RA | 975,083 | T→A | 100% | D255E (GAT→GAA) | mukF → | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium |
| RA | 1,017,296 | A→C | 100% | I335S (ATC→AGC) | ycbZ ← | putative peptidase |
| RA | 1,038,117 | C→G | 16.8% | H126Q (CAC→CAG) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,038,118 | C→G | 16.5% | L127V (CTG→GTG) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,039,479 | G→A | 17.1% | V62I (GTC→ATC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,039,480 | T→C | 17.1% | V62A (GTC→GCC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,065,426 | A→T | 100% | intergenic (+134/‑159) | yccE → / → agp | uncharacterized protein/glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,073,307 | Δ1 bp | 100% | coding (705/1149 nt) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| RA | 1,097,209 | T→G | 100% | intergenic (+380/+356) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
| RA | 1,100,233 | G→A | 100% | intergenic (+39/‑63) | ycdY → / → ycdZ | redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein |
| RA | 1,111,377 | A→G | 100% | D172G (GAT→GGT) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| RA | 1,113,544 | G→A | 15.6% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 15.3% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 15.1% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,129,394 | G→C | 15.2% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,143,125 | C→T | 100% | D415N (GAC→AAC) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,169,380 | T→C | 18.8% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 18.7% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 18.8% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,170,338 | (A)6→5 | 100% | coding (37/963 nt) | ldtC ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 1,196,803 | A→C | 17.0% | intergenic (+430/+64) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,196,804 | G→T | 17.5% | intergenic (+431/+63) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,197,340 | T→C | 100% | T65A (ACT→GCT) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,197,739 | A→G | 100% | S167P (TCC→CCC) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,207,981 | G→A | 100% | A161T (GCC→ACC) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,232,481 | C→T | 16.3% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 15.2% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,292,944 | T→C | 100% | intergenic (‑22/‑583) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,196 | IS5 (+) +4 bp | 100% | intergenic (‑274/‑328) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,306,787 | G→A | 15.8% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 16.5% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,307,634 | T→A | 100% | I338F (ATC→TTC) | clsA ← | cardiolipin synthase 1 |
| RA | 1,311,830 | A→G | 18.7% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 19.7% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,322,394 | C→G | 16.6% | D185H (GAC→CAC) | trpE ← | component I of anthranilate synthase |
| RA | 1,369,793 | G→A | 100% | E35E (GAG→GAA) | pspE → | thiosulfate:cyanide sulfurtransferase (rhodanese) |
| RA | 1,382,820 | T→C | 100% | Y292H (TAT→CAT) | ompG → | outer membrane porin G |
| RA | 1,399,677 | C→T | 100% | intergenic (‑151/+44) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,401,844 | A→G | 100% | I471T (ATC→ACC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,407,859 | A→G | 100% | intergenic (‑64/‑191) | ydaM ← / → ydaN | diguanylate cyclase, csgD regulator/putative Zn(II) transporter |
| RA | 1,433,718 | T→C | 100% | intergenic (‑44/+273) | pinR ← / ← ynaE | Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage |
| RA | 1,434,459 | C→T | 100% | intergenic (‑235/+499) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,435,737 | G→A | 100% | intergenic (‑118/+23) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| RA | 1,448,947 | A→C | 100% | T477P (ACG→CCG) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,470,558 | G→A | 100% | pseudogene (42/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,482,222 | A→T | 15.2% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,224 | T→G | 15.5% | intergenic (+23/+31) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,227 | C→A | 16.1% | intergenic (+26/+28) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,229 | A→T | 15.8% | intergenic (+28/+26) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,493,774 | A→G | 100% | L435L (TTA→TTG) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,501,912 | T→A | 100% | I117I (ATT→ATA) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,524,458:1 | +T | 15.7% | intergenic (+90/+23) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,524,463 | Δ1 bp | 15.4% | intergenic (+95/+18) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,530,076:1 | (A)7→8 | 100% | coding (155/483 nt) | ydcD → | putative immunity protein for RhsE |
| RA | 1,533,707 | G→T | 15.9% | P49T (CCT→ACT) | yddH ← | flavin reductase like‑protein |
| RA | 1,533,713 | A→C | 15.2% | F47V (TTT→GTT) | yddH ← | flavin reductase like‑protein |
| RA | 1,547,395 | A→G | 100% | intergenic (‑226/‑6) | yddG ← / → fdnG | aromatic amino acid exporter/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,555,324 | A→G | 100% | S116P (TCT→CCT) | maeA ← | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| RA | 1,557,343 | C→T | 16.3% | T232T (ACG→ACA) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,345 | T→A | 16.5% | T232S (ACG→TCG) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,347 | A→G | 16.5% | L231P (CTG→CCG) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,579,563 | G→T | 17.8% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 17.7% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 18.1% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 17.9% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,580,094 | C→T | 100% | D233N (GAT→AAT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,597,272 | T→A | 17.3% | pseudogene (716/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,647,873 | C→T | 16.0% | intergenic (‑23/‑61) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
| RA | 1,647,876 | A→G | 16.3% | intergenic (‑26/‑58) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
| RA | 1,650,904 | T→C | 100% | pseudogene (60/693 nt) | insD1 → | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,658,592 | C→T | 100% | A175V (GCC→GTC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,665,195:1 | (T)7→8 | 100% | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| RA | 1,681,932 | T→C | 100% | P33P (CCA→CCG) | ydgC ← | GlpM family inner membrane protein |
| RA | 1,707,029 | A→G | 100% | V37V (GTA→GTG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,712,306:1 | (T)7→8 | 100% | intergenic (+148/‑463) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,518 | (C)6→5 | 100% | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,728,444 | C→A | 100% | T33N (ACC→AAC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
| RA | 1,737,314 | C→A | 15.3% | intergenic (‑24/+142) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,827,031 | T→A | 100% | D410V (GAT→GTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,850,715 | Δ1 bp | 22.6% | intergenic (+22/‑145) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,850,719:1 | +T | 24.7% | intergenic (+26/‑141) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,865,682 | G→C | 15.3% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,859 | Δ1 bp | 16.7% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,868,865:1 | +G | 16.5% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,880,549 | T→C | 100% | T71A (ACC→GCC) | leuE ← | leucine efflux protein |
| RA | 1,880,851 | T→A | 16.3% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 16.1% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,881,128 | C→A | 100% | E228* (GAA→TAA) | dmlR ← | transcriptional activator of dmlA |
| RA | 1,946,790 | T→G | 100% | G180G (GGT→GGG) | yebB → | DUF830 family protein |
| RA | 1,971,761 | T→C | 100% | T311A (ACC→GCC) | tar ← | methyl‑accepting chemotaxis protein II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,983,761 | C→T | 100% | E437K (GAA→AAA) | araG ← | L‑arabinose ABC transporter ATPase |
| RA | 2,032,336 | G→C | 15.4% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,071,321 | A→G | 100% | intergenic (+110/‑218) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,089,854 | A→T | 17.4% | intergenic (‑141/‑142) | yefM ← / → hisL | antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide |
| RA | 2,159,354 | C→T | 100% | R323R (CGC→CGT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,161,946 | A→G | 100% | A161A (GCA→GCG) | iceT → | putative citrate/iron‑citrate/zinc‑citrate efflux transporter |
| RA | 2,173,076 | C→A | 100% | pseudogene (287/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,191,432 | C→T | 100% | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,197,365 | G→A | 100% | pseudogene (892/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,210,811 | C→T | 100% | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
| RA | 2,235,656 | T→C | 100% | I131T (ATC→ACC) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,246,800 | A→G | 100% | intergenic (‑31/+263) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
| RA | 2,250,210 | T→A | 100% | V165E (GTG→GAG) | yeiH → | UPF0324 family inner membrane protein |
| RA | 2,278,298 | C→T | 100% | intergenic (‑61/+272) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,279,021 | G→A | 100% | A247V (GCG→GTG) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,286,311 | C→G | 16.5% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 16.1% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 15.9% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,307,386 | A→T | 100% | D410E (GAT→GAA) | yojI ← | microcin J25 efflux ABC transporter permease/ATPase |
| RA | 2,319,581 | A→G | 16.9% | V99A (GTG→GCG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,582 | C→G | 16.5% | V99L (GTG→CTG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,585 | C→G | 15.6% | D98H (GAT→CAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,586 | C→T | 15.4% | A97A (GCG→GCA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,323,275 | T→A | 19.5% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 20.6% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 20.2% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 20.9% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 20.7% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,361,323 | T→A | 100% | Q31L (CAG→CTG) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,386,365 | T→A | 100% | F169Y (TTC→TAC) | yfbL → | putative M28A family peptidase |
| RA | 2,411,637 | Δ1 bp | 100% | coding (453/651 nt) | yfbT ← | sugar phosphatas |
| RA | 2,420,727 | G→A | 100% | G36D (GGC→GAC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
| RA | 2,436,937 | A→T | 100% | D305E (GAT→GAA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,449,607:1 | +G | 17.4% | coding (443/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,615 | C→G | 19.6% | G145G (GGG→GGC) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,616 | C→G | 20.5% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,624 | Δ1 bp | 16.1% | coding (426/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,469,656:1 | (T)7→8 | 100% | coding (526/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,493,645 | G→A | 100% | intergenic (‑391/+122) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,495,173 | T→A | 100% | A40A (GCA→GCT) | yfdY ← | DUF2545 family putative inner membrane protein |
| RA | 2,519,222 | T→G | 15.8% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 15.7% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 16.2% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,521,967 | C→A | 100% | A171S (GCG→TCG) | xapR ← | transcriptional activator of xapAB |
| RA | 2,525,135 | (A)6→5 | 100% | coding (9/765 nt) | yfeN → | putative outer membrane protein |
| RA | 2,530,925 | T→C | 100% | Q103Q (CAA→CAG) | zipA ← | FtsZ stabilizer |
| RA | 2,532,268 | T→C | 15.1% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,272 | T→A | 15.4% | intergenic (+48/‑137) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,279 | G→A | 15.5% | intergenic (+55/‑130) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,534,206 | T→G | 100% | R47R (CGT→CGG) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
| RA | 2,541,456 | A→G | 100% | I75T (ATT→ACT) | cysW ← | sulfate/thiosulfate ABC transporter permease |
| RA | 2,563,518:1 | (A)5→6 | 100% | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,564,525 | G→A | 100% | M1M (ATG→ATA) † | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,593,917 | G→A | 100% | A648V (GCG→GTG) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,600,288 | C→T | 100% | S128L (TCG→TTG) | gcvR → | transcriptional repressor, regulatory protein accessory to GcvA |
| RA | 2,638,037 | C→A | 100% | A206S (GCG→TCG) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,716,030 | T→G | 15.6% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 15.1% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,758,577 | G→T | 100% | N8K (AAC→AAA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
| RA | 2,772,236 | A→T | 16.1% | pseudogene (831/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,772,237 | A→G | 16.8% | pseudogene (830/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,777,363 | T→C | 100% | F83F (TTT→TTC) | yfjZ → | CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,807,091 | T→C | 18.3% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 18.1% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,810,756 | G→A | 100% | intergenic (+77/‑14) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,872 | C→T | 15.6% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 15.5% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,852,356 | T→A | 100% | L74Q (CTG→CAG) | hypD → | hydrogenase maturation protein |
| RA | 2,867,164 | C→T | 100% | A130T (GCG→ACG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,887,352 | T→A | 100% | intergenic (‑133/+226) | ygcB ← / ← cysH | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| RA | 2,900,481 | G→T | 100% | intergenic (‑208/‑111) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,933,395 | G→T | 17.2% | C98* (TGC→TGA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,398 | A→T | 17.2% | H97Q (CAT→CAA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,401 | A→C | 17.3% | V96V (GTT→GTG) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,966,414 | T→G | 100% | D674A (GAT→GCT) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 3,041,028 | G→A | 100% | R15C (CGT→TGT) | sdhE ← | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
| RA | 3,135,356 | T→C | 15.3% | Q339R (CAG→CGG) ‡ | pitB ← | phosphate transporter |
| RA | 3,135,357 | G→A | 15.3% | Q339* (CAG→TAG) ‡ | pitB ← | phosphate transporter |
| RA | 3,150,120 | T→C | 100% | F153F (TTT→TTC) | yghA → | putative oxidoreductase |
| RA | 3,165,015 | T→A | 100% | D320V (GAT→GTT) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,171,852 | C→T | 15.8% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 15.5% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 16.2% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 15.8% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,183,345:1 | +T | 18.6% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 17.4% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,202,003 | G→C | 18.3% | G38A (GGC→GCC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,009 | A→T | 16.7% | Q40L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,012 | A→T | 16.7% | Q41L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,018 | G→C | 16.4% | G43A (GGC→GCC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,685 | A→G | 15.7% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,686 | C→T | 15.4% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,693 | C→G | 16.3% | P268R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,274,233 | C→G | 15.2% | M225I (ATG→ATC) | garP ← | putative (D)‑galactarate transporter |
| RA | 3,274,238 | C→G | 18.2% | D224H (GAT→CAT) | garP ← | putative (D)‑galactarate transporter |
| RA | 3,350,648 | T→A | 100% | intergenic (‑189/+41) | elbB ← / ← arcB | isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,443,086 | T→A | 100% | N338Y (AAC→TAC) | secY ← | preprotein translocase membrane subunit |
| RA | 3,452,057 | A→T | 100% | I77N (ATC→AAC) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,477,434 | T→C | 100% | intergenic (‑15/‑206) | fkpA ← / → slyX | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/phi X174 lysis protein |
| RA | 3,524,413 | A→G | 100% | I515V (ATT→GTT) | mrcA → | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,541,962 | T→G | 100% | I519S (ATC→AGC) | feoB → | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,597,846 | (T)5→4 | 100% | intergenic (‑286/‑138) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
| RA | 3,601,825 | G→C | 15.1% | P88A (CCC→GCC) | ftsX ← | putative ABC transporter permease |
| RA | 3,622,796 | T→G | 100% | L1202R (CTG→CGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,648,042 | T→C | 100% | intergenic (‑254/‑486) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,657,599 | T→A | 16.1% | intergenic (+32/‑767) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,601 | G→C | 15.2% | intergenic (+34/‑765) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,603 | T→A | 15.9% | intergenic (+36/‑763) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,669,340 | A→G | 100% | intergenic (‑152/‑252) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| RA | 3,669,920 | A→G | 100% | E110G (GAA→GGA) | treF → | cytoplasmic trehalase |
| RA | 3,708,410 | T→A | 100% | intergenic (‑705/+206) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,427 | G→A | 16.6% | intergenic (‑722/+189) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,428 | T→A | 16.6% | intergenic (‑723/+188) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,429 | T→C | 16.5% | intergenic (‑724/+187) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,729,408 | C→G | 15.7% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,746,162 | G→T | 100% | L23L (CTG→CTT) | yiaO → | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| RA | 3,770,087 | C→A | 100% | pseudogene (55/114 nt) | yibU → | pseudogene, H repeat‑associated protein |
| RA | 3,790,300 | A→T | 15.7% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 15.5% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,805,475 | T→C | 100% | N159S (AAT→AGT) | waaP ← | kinase that phosphorylates core heptose of lipopolysaccharide |
| RA | 3,822,694 | G→T | 100% | G99W (GGG→TGG) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,832,188 | A→T | 18.8% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 20.0% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 19.0% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,840,547 | T→C | 100% | intergenic (+39/+2) | yicS → / ← nepI | putative periplasmic protein/putative transporter |
| RA | 3,853,909 | A→G | 100% | intergenic (+267/‑13) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,910,662 | A→T | 100% | D288E (GAT→GAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,927,735 | Δ1 bp | 100% | coding (581/993 nt) | asnA → | asparagine synthetase A |
| RA | 3,946,246 | G→A | 20.5% | noncoding (2543/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,950,468 | G→T | 100% | intergenic (+48/‑39) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,959,925 | A→T | 15.5% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,971,690 | A→C | 100% | Q144P (CAG→CCG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 4,015,333 | A→T | 16.3% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,017,924 | G→A | 100% | D198N (GAC→AAC) | rmuC → | DNA recombination protein |
| RA | 4,051,259 | G→T | 15.2% | intergenic (‑494/‑88) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,098,512 | C→A | 100% | R259R (CGC→CGA) | rhaS → | transcriptional activator of rhaBAD and rhaT |
| RA | 4,152,760 | G→T | 100% | N113K (AAC→AAA) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,168,540 | T→A | 100% | intergenic (+93/‑101) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 15.8% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,178,296 | A→T | 100% | intergenic (+8/‑151) | nusG → / → rplK | transcription termination factor/50S ribosomal subunit protein L11 |
| RA | 4,235,689:1 | +A | 100% | intergenic (+282/‑217) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,238,726 | A→G | 100% | I365V (ATT→GTT) | yjbH → | DUF940 family extracellular polysaccharide protein |
| MC JC | 4,242,942 | Δ66 bp | 100% | coding (510‑575/891 nt) | malG ← | maltose transporter subunit |
| RA | 4,261,358 | T→A | 15.6% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 15.7% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 17.8% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 16.7% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,279,370 | G→T | 100% | A298S (GCA→TCA) | ghxP → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| RA | 4,289,526 | A→G | 100% | K94K (AAA→AAG) | nrfB → | nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| RA | 4,296,060 | C→T | 28.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,340,287 | G→A | 100% | L79F (CTT→TTT) | adiA ← | arginine decarboxylase |
| RA | 4,352,460 | T→G | 100% | intergenic (+103/‑124) | yjdJ → / → ghoS | GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA |
| RA | 4,358,482 | T→A | 100% | I46F (ATC→TTC) | cadA ← | lysine decarboxylase, acid‑inducible |
| RA | 4,360,814 | T→G | 100% | Y374S (TAC→TCC) | cadC ← | cadBA operon transcriptional activator |
| JC | 4,370,611 | Δ5 bp | 100% | intergenic (‑199/‑73) | yjeH ← / → groS | putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| RA | 4,478,879 | T→C | 100% | V136A (GTT→GCT) | rraB → | protein inhibitor of RNase E |
| RA | 4,490,055 | T→G | 100% | E3D (GAA→GAC) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,500,814 | Δ1 bp | 100% | intergenic (‑23/‑446) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
| RA | 4,547,319 | C→A | 100% | R742S (CGT→AGT) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| RA | 4,573,188 | G→A | 17.4% | pseudogene (775/1503 nt) | yjiT → | pseudogene |
| RA | 4,573,189 | T→C | 17.8% | pseudogene (776/1503 nt) | yjiT → | pseudogene |
| RA | 4,615,859 | T→G | 100% | T403P (ACC→CCC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,627,837 | A→T | 100% | I175F (ATC→TTC) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| RA | 4,631,700 | T→C | 100% | L323P (CTT→CCT) | slt → | lytic murein transglycosylase, soluble |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 157667 = | 88 (0.960) | 13 (0.150) | 5/164 | NT | 16.8% | coding (66/480 nt) | folK | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
| ? | NC_000913 | 157709 = | 48 (0.570) | coding (24/480 nt) | folK | 2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 40 (0.480) | 14/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 224065 | NA (NA) | 31 (0.370) | 8/164 | NT | NA | noncoding (295/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224074 | NA (NA) | noncoding (304/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 33 (0.380) | 18/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225915 | NA (NA) | 10 (0.120) | 8/162 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225926 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 16 (0.190) | 11/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 54 (0.640) | 18/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 13 (0.150) | 7/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 21 (0.250) | 11/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 18 (0.220) | 9/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 24 (0.270) | 10/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 315520 | NA (NA) | 6 (0.070) | 5/164 | NT | NA | noncoding (292/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315537 | NA (NA) | noncoding (309/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 19 (0.220) | 13/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 22 (0.250) | 11/170 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315991 = | NA (NA) | 16 (0.180) | 8/170 | NT | NA | noncoding (763/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316014 = | NA (NA) | noncoding (786/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 18 (0.220) | 9/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 354733 | NA (NA) | 7 (0.080) | 7/164 | NT | NA | noncoding (135/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 354765 | NA (NA) | noncoding (167/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 22 (0.260) | 8/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 25 (0.300) | 10/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381825 | NA (NA) | 10 (0.120) | 10/164 | NT | NA | noncoding (566/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381833 | NA (NA) | noncoding (574/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381837 | NA (NA) | 7 (0.080) | 5/166 | NT | NA | noncoding (578/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 14 (0.160) | 9/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 385205 | 68 (0.750) | 19 (0.230) | 7/162 | NT | 21.7% | intergenic (‑589/‑27) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 385217 | 75 (0.900) | intergenic (‑601/‑15) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 409056 = | NA (NA) | 11 (0.130) | 7/164 | NT | NA | noncoding (5/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 409089 = | NA (NA) | intergenic (+139/+19) | ykiA/rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function | |||||
| * | ? | NC_000913 | = 535514 | 74 (0.810) | 14 (0.180) | 11/154 | NT | 16.0% | coding (1599/1782 nt) | gcl | glyoxylate carboligase |
| ? | NC_000913 | = 535539 | 83 (1.050) | coding (1624/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | NC_000913 | = 580768 | 56 (0.610) | 10 (0.130) | 6/146 | NT | 18.0% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 45 (0.600) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 683435 | 72 (0.790) | 16 (0.190) | 12/162 | NT | 18.7% | intergenic (‑42/+42) | hscC/rihA | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor/ribonucleoside hydrolase 1 |
| ? | NC_000913 | = 683457 | 74 (0.890) | intergenic (‑64/+20) | hscC/rihA | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor/ribonucleoside hydrolase 1 | |||||
| * | ? | NC_000913 | 730041 = | 0 (0.000) | 12 (0.140) | 7/168 | NT | 100% | coding (459/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619682 = | NA (NA) | coding (491/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 10 (0.120) | 6/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 730973 = | 90 (0.990) | 21 (0.250) | 6/166 | NT | 20.0% | coding (1391/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620569 = | NA (NA) | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 808417 = | 73 (0.800) | 13 (0.150) | 10/164 | NT | 16.2% | coding (841/1290 nt) | bioA | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| ? | NC_000913 | 808451 = | 67 (0.800) | coding (807/1290 nt) | bioA | 7,8‑diaminopelargonic acid synthase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 867819 | 72 (0.790) | 12 (0.140) | 7/166 | NT | 15.5% | coding (300/1872 nt) | gsiA | glutathione ABC transporter ATPase |
| ? | NC_000913 | = 867834 | 64 (0.750) | coding (315/1872 nt) | gsiA | glutathione ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 1040546 | NA (NA) | 10 (0.120) | 7/158 | NT | NA | noncoding (4/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1040578 | NA (NA) | noncoding (36/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 8 (0.100) | 7/158 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 98 (1.130) | 69/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1443460 | 87 (0.950) | 15 (0.180) | 8/166 | NT | 15.3% | coding (410/2640 nt) | ydbH | putative membrane‑anchored protein, function unknown |
| ? | NC_000913 | = 1443470 | 85 (1.000) | coding (420/2640 nt) | ydbH | putative membrane‑anchored protein, function unknown | |||||
| * | ? | NC_000913 | 1468596 = | NA (NA) | 41 (0.480) | 10/166 | NT | 50.6% | noncoding (645/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1650887 | 43 (0.470) | noncoding (45/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1670967 | 70 (0.770) | 14 (0.180) | 9/152 | NT | 17.8% | intergenic (+15/‑409) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | NC_000913 | = 1670981 | 70 (0.900) | intergenic (+29/‑395) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_000913 | = 1748833 | 54 (0.590) | 11 (0.130) | 7/160 | NT | 18.0% | coding (727/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | = 1748842 | 52 (0.630) | coding (718/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | = 2042125 | 66 (0.720) | 12 (0.150) | 7/158 | NT | 16.8% | intergenic (+100/‑243) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| ? | NC_000913 | = 2042138 | 60 (0.740) | intergenic (+113/‑230) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 20 (0.240) | 8/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2280409 = | 66 (0.720) | 13 (0.150) | 8/164 | NT | 20.2% | coding (75/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase |
| ? | NC_000913 | 2280436 = | 42 (0.500) | coding (48/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase | |||||
| * | ? | NC_000913 | = 2304696 | NA (NA) | 26 (0.310) | 10/164 | NT | 43.3% | noncoding (280/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304728 | 37 (0.410) | noncoding (312/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2662541 | NA (NA) | 20 (0.240) | 9/164 | NT | NA | noncoding (233/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 2662574 | NA (NA) | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 43 (0.490) | 12/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2888334 = | NA (NA) | 10 (0.120) | 6/164 | NT | NA | noncoding (1/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2888367 = | NA (NA) | noncoding (34/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2900530 | 76 (0.830) | 13 (0.160) | 6/156 | NT | 15.7% | intergenic (‑257/‑62) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913 | = 2900548 | 73 (0.910) | intergenic (‑275/‑44) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | 2981436 = | 74 (0.810) | 13 (0.150) | 7/166 | NT | 15.8% | coding (747/1419 nt) | araE | arabinose transporter |
| ? | NC_000913 | 2981460 = | 70 (0.820) | coding (723/1419 nt) | araE | arabinose transporter | |||||
| * | ? | NC_000913 | 3083831 = | 88 (0.960) | 16 (0.200) | 11/160 | NT | 17.2% | intergenic (‑34/+104) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | 3083868 = | 75 (0.920) | intergenic (‑71/+67) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | = 3159421 | 77 (0.840) | 14 (0.160) | 10/166 | NT | 15.7% | coding (1726/2220 nt) | ygiQ | Radical SAM superfamily protein |
| ? | NC_000913 | = 3159442 | 79 (0.930) | coding (1705/2220 nt) | ygiQ | Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | = 3241202 | 81 (0.890) | 16 (0.190) | 11/162 | NT | 17.1% | coding (543/552 nt) | ygjV | Imp‑YgjV family inner membrane protein |
| ? | NC_000913 | = 3241215 | 81 (0.980) | coding (530/552 nt) | ygjV | Imp‑YgjV family inner membrane protein | |||||
| * | ? | NC_000913 | 3281702 = | NA (NA) | 9 (0.110) | 6/164 | NT | NA | noncoding (1/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3281734 = | NA (NA) | noncoding (33/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 11 (0.130) | 6/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 9 (0.110) | 5/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 18 (0.210) | 11/166 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620614 | NA (NA) | 14 (0.160) | 7/166 | NT | 100% | coding (1423/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620635 | 0 (0.000) | coding (1444/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3622466 = | NA (NA) | 16 (0.180) | 8/170 | NT | 39.2% | coding (3275/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622497 = | 26 (0.280) | coding (3306/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 8 (0.090) | 7/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3765547 = | 0 (0.000) | 23 (0.270) | 5/168 | NT | 32.2% | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3767284 = | 97 (1.130) | pseudogene (64/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | 3781698 = | NA (NA) | 6 (0.070) | 5/164 | NT | NA | noncoding (1/29 nt) | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3781727 = | NA (NA) | intergenic (+39/+14) | trmL/cysE | tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent/serine acetyltransferase | |||||
| * | ? | NC_000913 | = 4035360 | NA (NA) | 25 (0.290) | 10/166 | NT | 100% | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035384 | 0 (0.000) | intergenic (+231/‑147) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 61 (0.720) | 12/166 | NT | 100% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4040505 | 0 (0.000) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4040482 = | NA (NA) | 35 (0.410) | 11/166 | NT | NA | intergenic (+59/‑35) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4295912 = | NA (NA) | 7 (0.080) | 4/164 | NT | NA | noncoding (78/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295942 = | NA (NA) | noncoding (108/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4326250 | NA (NA) | 5 (0.060) | 3/164 | NT | NA | noncoding (449/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4326350 | NA (NA) | 10 (0.120) | 6/164 | NT | NA | noncoding (549/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326380 | NA (NA) | noncoding (579/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4344813 = | NA (NA) | 12 (0.150) | 7/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4614762 | 90 (0.990) | 17 (0.200) | 7/170 | NT | 16.6% | coding (782/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4614786 | 85 (0.980) | coding (758/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||