Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F212 I0 R1 246 122.0 6097616 93.1% 5676880 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,658,592 C→T 100% A175V (GCC→GTC)  ynfE → putative selenate reductase, periplasmic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,658,5920CT96.9% 292.2 / ‑0.9 98A175V (GCC→GTC) ynfEputative selenate reductase, periplasmic
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base T (48/46);  total (50/48)
Fisher's exact test for biased strand distribution p-value = 6.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01

CTGAAGAAAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGCCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCTACA  >  NC_000913/1658495‑1658687
                                                                                                 |                                                                                               
cTGAAGAAAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCt                                                                                               >  1:2879463/1‑100 (MQ=255)
 tGAAGAAAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGtctc                                                                                              >  2:1627571/1‑100 (MQ=255)
    agaaAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTcggc                                                                                           <  2:1304498/100‑1 (MQ=255)
     gaaAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACTCGCTCTTCGCCATCAGTCTcggcg                                                                                          >  2:185421/1‑100 (MQ=255)
     gaaAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTcggcg                                                                                          >  1:102392/1‑100 (MQ=255)
      aaaaCCGTCGAACAATATGACAATGAGGCTGTATATAATCAGTACGCTTCGGGGATCGTTGGTGGCACTATGACCCGCTCTTCGCCATCAGCCTc                                                                                              >  2:1548438/1‑95 (MQ=255)
       aaaCCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGTGGATCGTTAGCGGCAATATGACCCTCTCTACACCATAAGTCTcgacgg                                                                                         >  1:1316498/1‑99 (MQ=255)
           cGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCaaa                                                                                    >  2:2799578/1‑100 (MQ=255)
            gTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGTCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGACGGTCAAAc                                                                                   >  1:538060/1‑100 (MQ=255)
            gTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAAc                                                                                   <  1:378181/100‑1 (MQ=255)
             tCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTTTTCGCCATCAGTCTCGGCGGTCAAACg                                                                                  <  2:2866997/100‑1 (MQ=255)
               gAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGcc                                                                                >  1:636555/1‑100 (MQ=255)
               gAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGcc                                                                                >  2:1954670/1‑100 (MQ=255)
                aaCAGTATGGCTATGATACTGTATCTATTCAGTTCTCTTCGGGGATCGTTAGAGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGcc                                                                                <  2:162672/99‑1 (MQ=255)
                 aCAATATGGCAATGAGGCTGTATATATTCAGTACTCTCCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCtg                                                                              >  1:819230/1‑100 (MQ=255)
                   aaTATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCtgat                                                                            >  1:2626014/1‑100 (MQ=255)
                    atatGGCAATGAGGCTGTATATATTCTGTACTCTTCGTGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCtgatg                                                                           <  1:601329/100‑1 (MQ=255)
                      atGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGaa                                                                         >  2:502336/1‑100 (MQ=255)
                       tGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAAc                                                                        >  1:2056736/1‑100 (MQ=255)
                       tGGCAATCAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTCGCGGCACTATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATCAAc                                                                        >  2:1226235/1‑100 (MQ=255)
                          cAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCAGCTCTTCGCCATCAGTCTCAGCGGTCAAACGCATGATGAACTGc                                                                     >  1:247836/1‑100 (MQ=255)
                          cAATGAGGCTGTATATAATCAGTACTCTTCGGAGATCGATGGCGGCAATATGACCCGATCTTACCCAACAGTCTCGGCGGTCACACGAATCATGAAATGc                                                                     >  2:238059/1‑100 (MQ=255)
                            aTGAGGCTGTATATATTCAGTAGTCTTCGGGGATCGTGGGGGGCAATATAACCCGCTCTTCGCCGTCAGTCTCGGCGGTCAAACGCCTGATGAACt                                                                       <  2:1261238/96‑1 (MQ=255)
                             tGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAc                                                                  <  1:819425/100‑1 (MQ=255)
                             tGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAc                                                                  >  1:326367/1‑100 (MQ=255)
                                ggCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAcggc                                                               >  1:747528/1‑100 (MQ=255)
                                ggCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAcggc                                                               <  1:2119224/100‑1 (MQ=255)
                                ggCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGGCAAACGCCTGATGAACTGCTAcggc                                                               <  1:185423/100‑1 (MQ=255)
                                 gCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAcggcg                                                              >  1:1029656/1‑100 (MQ=255)
                                  cTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTAcggcgg                                                             <  1:981095/100‑1 (MQ=255)
                                    gTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGtt                                                           >  1:2072507/1‑100 (MQ=255)
                                     tatataTTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGtt                                                           <  1:2767342/99‑1 (MQ=255)
                                     tatataTTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTc                                                          <  1:1696931/100‑1 (MQ=255)
                                     tatataTTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTc                                                          <  1:2711836/100‑1 (MQ=255)
                                     tatataTTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTc                                                          <  1:2560758/100‑1 (MQ=255)
                                       tatatTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCAc                                                        <  1:177263/100‑1 (MQ=255)
                                       tatatTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCAc                                                        <  1:2090392/100‑1 (MQ=255)
                                       tatatTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCAc                                                        <  2:326364/100‑1 (MQ=255)
                                         tatTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTc                                                      <  2:1024190/100‑1 (MQ=255)
                                          atTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCa                                                     >  1:2312593/1‑100 (MQ=255)
                                           ttCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCaa                                                    >  2:2973929/1‑100 (MQ=255)
                                            tCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGTTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAAc                                                   <  1:1448135/100‑1 (MQ=255)
                                              aGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCTATCAGTCTTGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCa                                                 >  1:2529870/1‑100 (MQ=255)
                                               gTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAg                                                <  1:1653241/100‑1 (MQ=255)
                                                tACTCTCCGGCCATCGTTGTCGGCAATATGACCCGCTCTTCGCCATCAGTCTCAGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGt                                               <  2:2056713/100‑1 (MQ=255)
                                                 aCTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTa                                              <  1:1068161/100‑1 (MQ=255)
                                                   tctTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATg                                            <  1:1077174/100‑1 (MQ=255)
                                                   tctTCGGGGATCGTTGGAGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATg                                            <  2:988106/100‑1 (MQ=255)
                                                    ctTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATgg                                           <  1:1667397/100‑1 (MQ=255)
                                                     ttCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGc                                          <  1:95292/100‑1 (MQ=255)
                                                     ttCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGc                                          >  2:1709088/1‑100 (MQ=255)
                                                     ttCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGc                                          <  1:1473944/100‑1 (MQ=255)
                                                     ttCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGc                                          <  1:2315888/100‑1 (MQ=255)
                                                        ggggATCGTTGGCGGCAATATGACCCGCTCTTCGTCATCAGTCTCGGAGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTc                                        <  1:1155980/99‑1 (MQ=255)
                                                        ggggATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTcc                                       >  1:905787/1‑100 (MQ=255)
                                                         gggATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCt                                      <  1:646892/100‑1 (MQ=255)
                                                            aTCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACa                                   <  1:2414606/100‑1 (MQ=255)
                                                            aTCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGATCACTCAACCAGTATGGCTCCTACa                                   >  1:929780/1‑100 (MQ=255)
                                                            aTCGTGGGCGGCAACATGACCCGCTCTTCGCCATCAGTCTCGGCGTTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACa                                   <  2:2072484/100‑1 (MQ=255)
                                                              cGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGCCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGc                                 <  2:431655/100‑1 (MQ=255)
                                                               gTTGGCGGCAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCa                                >  1:2002012/1‑100 (MQ=255)
                                                                  ggcggcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACt                              >  2:8727/1‑99 (MQ=255)
                                                                   gcggcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTgc                            >  1:1835594/1‑100 (MQ=255)
                                                                    cggcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTgcg                           >  1:1453340/1‑100 (MQ=255)
                                                                    cggcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGACGGATCACTCAACCAGTATGGCTCCTACAGCACTg                             >  1:1099491/1‑98 (MQ=255)
                                                                     ggcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGTCGGTTCACTCAACCAGTATGGCTCCTACAGCAATgcg                           >  1:2591043/1‑99 (MQ=255)
                                                                      gcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTgcgc                          >  2:1325721/1‑99 (MQ=255)
                                                                      gcAATATGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCa                         <  2:2312567/100‑1 (MQ=255)
                                                                         ctatTACCCGCTCTTCGCCATTAATCTCGGCGATAAAACGCCTAATGAACTGCTACCGCATTACACTTACCCATTATAGCTCTTACAGAACTATGCaact                      >  2:703101/2‑98 (MQ=255)
                                                                         atatGACCCGCTCTTCGCCATCAGACTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCCCCTACAGCACTGCGCAAAt                      >  2:522767/1‑100 (MQ=255)
                                                                          tatGACCCGCTCTTCGCCATCAGTCTCGGCGGTTAATCGCCTGATTAATTGCTACGGCTTTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAAtt                     <  1:2539547/100‑1 (MQ=255)
                                                                          tatGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAAtt                     >  1:589315/1‑100 (MQ=255)
                                                                            tGACCCGCTCTTCGCCATCAGTCTCGGCGGTCGAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTc                   >  1:1265333/1‑100 (MQ=255)
                                                                            tGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCCAATTTc                   >  2:1376713/1‑100 (MQ=255)
                                                                            tGACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTc                   <  1:45210/100‑1 (MQ=255)
                                                                             gACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTcc                  >  1:1683784/1‑100 (MQ=255)
                                                                             gACCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTcc                  >  2:1402209/1‑100 (MQ=255)
                                                                              aCCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCt                 >  2:2457092/1‑100 (MQ=255)
                                                                              aCCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCt                 >  2:2064354/1‑100 (MQ=255)
                                                                              aCCCGCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCt                 >  1:1424182/1‑100 (MQ=255)
                                                                              aCCCGCTCTTCGCCATCAGTCACGGCGCTCAAACGCCTGATGAACTACTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTAcc                  >  2:1167333/1‑99 (MQ=255)
                                                                               cccGCTCTTCGCCATCAGTCTCGGCGGTCGAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCtg                <  2:1265321/100‑1 (MQ=255)
                                                                                ccGCTCTTCGCCATCAGTCTCGGCGGTCAAACGTCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCt                 >  2:1817550/1‑98 (MQ=255)
                                                                                 cGCTCTTCGCCATCAGCCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCtgtg              <  2:2459137/100‑1 (MQ=255)
                                                                                  gCTCTTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGc             >  2:950677/1‑100 (MQ=255)
                                                                                    tctTCGCCGTCAGTCGCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCTTACAGCACTGCGCAAATTTCCTGTGcc            <  2:332510/99‑1 (MQ=255)
                                                                                     ctTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCAt          >  2:2386000/1‑100 (MQ=255)
                                                                                     ctTCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCAt          >  1:895381/1‑100 (MQ=255)
                                                                                     ccactcctccAGTCTCGGCCGTCAAACGCTTGATGAACTGCTACGGCTGTTCACTCAACCATTATGGCTCCTATAGCACTGCGCAAATTTCCTGTGc             <  2:2997698/88‑1 (MQ=255)
                                                                                       tCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGc        <  1:421768/100‑1 (MQ=255)
                                                                                       tCGCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTAAAGCACTGCGCAAATTTCCTGTGCCATGc        >  2:2428034/1‑100 (MQ=255)
                                                                                         gCCATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGccc      <  1:2511705/100‑1 (MQ=255)
                                                                                          ccATCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCt     >  1:1629153/1‑100 (MQ=255)
                                                                                          ccATCAGTCTCGGCGGTCAAACGCCTGATAAACTGCCACGGCGGTTCTCTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGccc      <  2:1043270/99‑1 (MQ=255)
                                                                                            aTCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCTac   <  1:2457121/100‑1 (MQ=255)
                                                                                             tCAGTCTCTGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCTa    <  1:2683585/98‑1 (MQ=255)
                                                                                             tCAGTCTCGGCGGTCAAACGCCTGATGAACTGTAACGTAGGTTGGCTCAACCTGTATGGCGCCTACAGCAGTGCGCTAATTTCCTGTTCCAGGGCCTaca  <  2:1360255/100‑1 (MQ=255)
                                                                                             tCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCTAATTTCCTGTGCCATGCCCTaca  <  2:628656/100‑1 (MQ=255)
                                                                                             tCAGTCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCTaca  <  2:1970487/100‑1 (MQ=255)
                                                                                                 |                                                                                               
CTGAAGAAAACCGTCGAACAATATGGCAATGAGGCTGTATATATTCAGTACTCTTCGGGGATCGTTGGCGGCAATATGACCCGCTCTTCGCCATCAGCCTCGGCGGTCAAACGCCTGATGAACTGCTACGGCGGTTCACTCAACCAGTATGGCTCCTACAGCACTGCGCAAATTTCCTGTGCCATGCCCTACA  >  NC_000913/1658495‑1658687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A