breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 36,231 | T→C | 100% | intergenic (‑69/+40) | caiD ← / ← caiC | carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase |
RA | 53,012 | A→G | 100% | G135G (GGT→GGC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
RA | 88,208 | A→T | 100% | T61S (ACA→TCA) | cra → | transcriptional repressor‑activator for carbon metabolism |
RA | 107,553 | (T)9→8 | 100% | intergenic (+79/‑152) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
RA | 111,013 | G→A | 17.2% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
RA | 111,016 | T→C | 17.0% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
RA | 129,360 | G→T | 100% | intergenic (+24/+47) | lpd → / ← yacH | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase/DUF3300 family protein |
RA | 162,973 | G→A | 100% | C290Y (TGT→TAT) | hrpB → | putative ATP‑dependent helicase |
RA | 178,902 | C→T | 100% | L84L (TTG→TTA) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
RA | 179,327 | A→T | 100% | I31F (ATC→TTC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 179,442 | A→T | 100% | H69L (CAC→CTC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
MC JC | 190,553 | Δ14 bp | 100% | coding (680‑693/726 nt) | rpsB → | 30S ribosomal subunit protein S2 |
RA | 207,483 | A→C | 15.9% | V786V (GTA→GTC) | dnaE → | DNA polymerase III alpha subunit |
RA | 207,486 | G→T | 15.8% | M787I (ATG→ATT) | dnaE → | DNA polymerase III alpha subunit |
RA | 216,568 | C→T | 100% | A146T (GCC→ACC) | yaeF ← | putative lipoprotein |
RA | 232,196 | G→T | 100% | G91C (GGC→TGC) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
RA | 236,541 | C→T | 100% | R159* (CGA→TGA) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 252,589 | G→C | 15.8% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
RA | 252,594 | G→C | 15.4% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
RA | 265,418 | A→G | 100% | R42R (CGT→CGC) | ykfF ← | CP4‑6 prophage; uncharacterized protein |
RA | 281,581 | G→A | 100% | R135W (CGG→TGG) | yagA ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
RA | 317,566 | G→A | 17.6% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
RA | 362,884 | A→G | 100% | L99S (TTA→TCA) | lacY ← | lactose permease |
RA | 364,024 | C→T | 100% | R761H (CGC→CAC) | lacZ ← | beta‑D‑galactosidase |
RA | 367,830 | G→A | 100% | Y197Y (TAC→TAT) | mhpR ← | mhp operon transcriptional activator |
RA | 383,477 | G→A | 100% | G153G (GGC→GGT) | yaiP ← | putative family 2 glycosyltransferase |
RA | 400,214 | T→C | 100% | D237G (GAC→GGC) | ddlA ← | D‑alanine‑D‑alanine ligase A |
RA | 416,389 | (C)5→4 | 100% | coding (564/1203 nt) | sbcD ← | exonuclease, dsDNA, ATP‑dependent |
RA | 428,188 | G→T | 100% | R181L (CGC→CTC) | secD → | SecYEG protein translocase auxillary subunit |
RA | 459,256 | T→C | 100% | D123D (GAT→GAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 459,642 | A→G | 100% | E252G (GAA→GGA) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 481,228 | C→A | 15.2% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
RA | 497,139:1 | (T)5→6 | 100% | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
RA | 520,993 | T→G | 100% | V193G (GTC→GGC) | ybbP → | putative ABC transporter permease |
RA | 532,380 | A→G | 100% | intergenic (‑159/‑71) | allS ← / → allA | allD operon transcriptional activator/ureidoglycolate lyase, releasing urea |
RA | 584,262:1 | (A)7→8 | 100% | coding (582/750 nt) | appY → | global transcriptional activator; DLP12 prophage |
RA | 649,964:1 | +G | 100% | coding (527/909 nt) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
RA | 661,369 | T→C | 100% | N4D (AAT→GAT) | ybeF ← | LysR family putative transcriptional regulator |
RA | 662,636 | T→G | 100% | T3P (ACC→CCC) | ybeD ← | UPF0250 family protein |
RA | 681,694 | A→G | 18.0% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
RA | 681,699 | T→A | 18.4% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
RA | 681,700 | T→A | 17.7% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
RA | 681,705 | C→T | 18.6% | intergenic (+42/+18) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
RA | 700,805 | A→T | 100% | C264S (TGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
RA | 712,150 | A→T | 100% | L218Q (CTG→CAG) | ybfF ← | acyl‑CoA esterase |
RA | 720,946 | C→T | 100% | intergenic (+106/+110) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
RA | 750,896 | Δ1 bp | 100% | coding (1274/2448 nt) | ybgQ ← | putative outer membrane protein |
RA | 772,209 | C→A | 100% | T251N (ACC→AAC) | cydA → | cytochrome d terminal oxidase, subunit I |
RA | 824,572 | T→A | 15.2% | intergenic (‑75/‑58) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
RA | 824,573 | T→A | 15.2% | intergenic (‑76/‑57) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
RA | 834,352 | A→T | 100% | Q428L (CAG→CTG) | dinG → | ATP‑dependent DNA helicase |
RA | 851,094 | G→A | 100% | P502S (CCG→TCG) | opgE ← | OPG biosynthetic transmembrane phosphoethanolamine transferase |
RA | 869,724 | A→C | 15.3% | N105T (AAC→ACC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
RA | 882,722 | G→A | 100% | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
RA | 894,155 | T→G | 100% | D124E (GAT→GAG) | potF → | putrescine ABC transporter periplasmic binding protein |
RA | 905,720 | C→A | 100% | L270M (CTG→ATG) | amiD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase, Zn‑dependent; OM lipoprotein |
RA | 931,952 | C→T | 100% | V33V (GTG→GTA) | trxB ← | thioredoxin reductase, FAD/NAD(P)‑binding |
RA | 933,387 | C→T | 100% | A55V (GCC→GTC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
RA | 966,368 | A→G | 100% | A683A (GCA→GCG) | ycaI → | ComEC family inner membrane protein |
RA | 975,083 | T→A | 100% | D255E (GAT→GAA) | mukF → | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium |
RA | 1,017,296 | A→C | 100% | I335S (ATC→AGC) | ycbZ ← | putative peptidase |
RA | 1,036,094 | A→G | 15.2% | I109V (ATC→GTC) | hyaD → | hydrogenase 1 maturation protease |
RA | 1,036,103 | C→T | 16.0% | H112Y (CAT→TAT) | hyaD → | hydrogenase 1 maturation protease |
RA | 1,073,307 | Δ1 bp | 100% | coding (705/1149 nt) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
RA | 1,097,209 | T→G | 100% | intergenic (+380/+356) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
RA | 1,100,233 | G→A | 100% | intergenic (+39/‑63) | ycdY → / → ycdZ | redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein |
RA | 1,111,377 | A→G | 100% | D172G (GAT→GGT) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
RA | 1,143,125 | C→T | 100% | D415N (GAC→AAC) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
RA | 1,170,338 | (A)6→5 | 100% | coding (37/963 nt) | ldtC ← | L,D‑transpeptidase linking Lpp to murein |
RA | 1,197,340 | T→C | 100% | T65A (ACT→GCT) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
RA | 1,197,739 | A→G | 100% | S167P (TCC→CCC) | ymfE ← | e14 prophage; putative inner membrane protein |
RA | 1,206,070 | T→C | 15.9% | pseudogene (340/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
RA | 1,207,981 | G→A | 100% | A161T (GCC→ACC) | stfP → | e14 prophage; uncharacterized protein |
RA | 1,232,481 | C→T | 19.2% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
RA | 1,232,484 | A→G | 18.4% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
RA | 1,292,944 | T→C | 100% | intergenic (‑22/‑583) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
JC JC | 1,293,196 | IS5 (+) +4 bp | 100% | intergenic (‑274/‑328) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,298,278 | T→A | 18.2% | intergenic (‑157/‑320) | adhE ← / → ychE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein |
RA | 1,298,281 | T→A | 18.3% | intergenic (‑160/‑317) | adhE ← / → ychE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein |
RA | 1,298,284 | T→A | 18.5% | intergenic (‑163/‑314) | adhE ← / → ychE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein |
RA | 1,307,634 | T→A | 100% | I338F (ATC→TTC) | clsA ← | cardiolipin synthase 1 |
RA | 1,311,831 | C→T | 15.3% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
RA | 1,369,793 | G→A | 100% | E35E (GAG→GAA) | pspE → | thiosulfate:cyanide sulfurtransferase (rhodanese) |
RA | 1,382,820 | T→C | 100% | Y292H (TAT→CAT) | ompG → | outer membrane porin G |
RA | 1,399,677 | C→T | 100% | intergenic (‑151/+44) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
RA | 1,401,844 | A→G | 100% | I471T (ATC→ACC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,406,093 | A→G | 18.4% | I39V (ATC→GTC) | smrA → | DNA endonuclease |
RA | 1,406,098 | C→T | 18.1% | D40D (GAC→GAT) | smrA → | DNA endonuclease |
RA | 1,407,859 | A→G | 100% | intergenic (‑64/‑191) | ydaM ← / → ydaN | diguanylate cyclase, csgD regulator/putative Zn(II) transporter |
RA | 1,433,718 | T→C | 100% | intergenic (‑44/+273) | pinR ← / ← ynaE | Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage |
RA | 1,434,459 | C→T | 100% | intergenic (‑235/+499) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,435,737 | G→A | 23.7% | intergenic (‑118/+23) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
RA | 1,441,833 | G→C | 15.2% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
RA | 1,446,357:1 | +T | 17.3% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
RA | 1,446,362 | Δ1 bp | 17.7% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
RA | 1,448,947 | A→C | 100% | T477P (ACG→CCG) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,470,558 | G→A | 100% | pseudogene (42/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,493,774 | A→G | 100% | L435L (TTA→TTG) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
RA | 1,501,912 | T→A | 100% | I117I (ATT→ATA) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
RA | 1,509,243 | C→T | 15.5% | intergenic (‑179/‑43) | yncJ ← / → hicA | uncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system |
RA | 1,509,246 | A→G | 15.2% | intergenic (‑182/‑40) | yncJ ← / → hicA | uncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system |
RA | 1,530,076:1 | (A)7→8 | 100% | coding (155/483 nt) | ydcD → | putative immunity protein for RhsE |
RA | 1,547,395 | A→G | 100% | intergenic (‑226/‑6) | yddG ← / → fdnG | aromatic amino acid exporter/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
RA | 1,555,324 | A→G | 100% | S116P (TCT→CCT) | maeA ← | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
RA | 1,580,094 | C→T | 100% | D233N (GAT→AAT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
RA | 1,658,592 | C→T | 100% | A175V (GCC→GTC) | ynfE → | putative selenate reductase, periplasmic |
RA | 1,665,195:1 | (T)7→8 | 100% | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
RA | 1,681,932 | T→C | 100% | P33P (CCA→CCG) | ydgC ← | GlpM family inner membrane protein |
RA | 1,707,029 | A→G | 100% | V37V (GTA→GTG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,712,306:1 | (T)7→8 | 100% | intergenic (+148/‑463) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,712,518 | (C)6→5 | 100% | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,728,444 | C→A | 100% | T33N (ACC→AAC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
RA | 1,795,227 | A→T | 15.9% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
RA | 1,795,229 | A→T | 15.8% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
RA | 1,827,031 | T→A | 100% | D410V (GAT→GTT) | astB ← | succinylarginine dihydrolase |
RA | 1,880,549 | T→C | 100% | T71A (ACC→GCC) | leuE ← | leucine efflux protein |
RA | 1,881,128 | C→A | 100% | E228* (GAA→TAA) | dmlR ← | transcriptional activator of dmlA |
RA | 1,946,790 | T→G | 100% | G180G (GGT→GGG) | yebB → | DUF830 family protein |
RA | 1,971,761 | T→C | 100% | T311A (ACC→GCC) | tar ← | methyl‑accepting chemotaxis protein II |
MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
RA | 1,983,761 | C→T | 100% | E437K (GAA→AAA) | araG ← | L‑arabinose ABC transporter ATPase |
RA | 1,985,112 | C→G | 15.0% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
RA | 2,071,321 | A→G | 100% | intergenic (+110/‑218) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,159,354 | C→T | 100% | R323R (CGC→CGT) | mdtC → | multidrug efflux system, subunit C |
RA | 2,161,946 | A→G | 100% | A161A (GCA→GCG) | iceT → | putative citrate/iron‑citrate/zinc‑citrate efflux transporter |
RA | 2,168,420 | A→T | 17.0% | intergenic (‑114/‑292) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
RA | 2,168,423 | A→T | 15.8% | intergenic (‑117/‑289) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
RA | 2,173,076 | C→A | 100% | pseudogene (287/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
RA | 2,191,432 | C→T | 100% | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
RA | 2,197,365 | G→A | 100% | pseudogene (892/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,210,811 | C→T | 100% | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
RA | 2,235,656 | T→C | 100% | I131T (ATC→ACC) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
RA | 2,246,800 | A→G | 100% | intergenic (‑31/+263) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
RA | 2,250,210 | T→A | 32.2% | V165E (GTG→GAG) | yeiH → | UPF0324 family inner membrane protein |
RA | 2,278,298 | C→T | 100% | intergenic (‑61/+272) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
RA | 2,279,021 | G→A | 100% | A247V (GCG→GTG) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
RA | 2,307,386 | A→T | 100% | D410E (GAT→GAA) | yojI ← | microcin J25 efflux ABC transporter permease/ATPase |
RA | 2,323,286 | C→T | 15.2% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
RA | 2,361,323 | T→A | 100% | Q31L (CAG→CTG) | rhmD ← | L‑rhamnonate dehydratase |
RA | 2,386,365 | T→A | 100% | F169Y (TTC→TAC) | yfbL → | putative M28A family peptidase |
RA | 2,411,637 | Δ1 bp | 100% | coding (453/651 nt) | yfbT ← | sugar phosphatas |
RA | 2,420,727 | G→A | 100% | G36D (GGC→GAC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
RA | 2,436,937 | A→T | 100% | D305E (GAT→GAA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
RA | 2,441,682 | A→C | 15.2% | intergenic (‑77/‑82) | fabB ← / → mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
RA | 2,469,656:1 | (T)7→8 | 100% | coding (526/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,493,645 | G→A | 100% | intergenic (‑391/+122) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
RA | 2,495,173 | T→A | 100% | A40A (GCA→GCT) | yfdY ← | DUF2545 family putative inner membrane protein |
RA | 2,521,967 | C→A | 100% | A171S (GCG→TCG) | xapR ← | transcriptional activator of xapAB |
RA | 2,525,135 | (A)6→5 | 100% | coding (9/765 nt) | yfeN → | putative outer membrane protein |
RA | 2,530,925 | T→C | 100% | Q103Q (CAA→CAG) | zipA ← | FtsZ stabilizer |
RA | 2,534,206 | T→G | 100% | R47R (CGT→CGG) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
RA | 2,541,456 | A→G | 100% | I75T (ATT→ACT) | cysW ← | sulfate/thiosulfate ABC transporter permease |
RA | 2,560,321 | C→T | 15.6% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
RA | 2,560,330 | G→T | 16.2% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
RA | 2,563,518:1 | (A)5→6 | 100% | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,564,501 | T→C | 25.2% | intergenic (+129/‑22) | yffR → / → yffS | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,564,525 | G→A | 100% | M1M (ATG→ATA) † | yffS → | CPZ‑55 prophage; uncharacterized protein |
RA | 2,593,917 | G→A | 100% | A648V (GCG→GTG) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
RA | 2,600,288 | C→T | 100% | S128L (TCG→TTG) | gcvR → | transcriptional repressor, regulatory protein accessory to GcvA |
RA | 2,638,037 | C→A | 100% | A206S (GCG→TCG) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
RA | 2,653,367 | G→A | 15.6% | intergenic (+28/+790) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
RA | 2,653,372 | T→C | 15.1% | intergenic (+33/+785) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
RA | 2,707,320 | A→T | 15.3% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
RA | 2,707,321 | A→T | 16.8% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
RA | 2,758,577 | G→T | 100% | N8K (AAC→AAA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
RA | 2,777,363 | T→C | 100% | F83F (TTT→TTC) | yfjZ → | CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system |
RA | 2,810,756 | G→A | 100% | intergenic (+77/‑14) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
RA | 2,852,356 | T→A | 100% | L74Q (CTG→CAG) | hypD → | hydrogenase maturation protein |
RA | 2,867,164 | C→T | 100% | A130T (GCG→ACG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
RA | 2,887,352 | T→A | 100% | intergenic (‑133/+226) | ygcB ← / ← cysH | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
RA | 2,900,481 | G→T | 100% | intergenic (‑208/‑111) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
RA | 2,971,151 | T→C | 16.7% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
RA | 2,971,154 | G→A | 15.8% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
RA | 2,971,159 | G→A | 17.0% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
RA | 3,041,028 | G→A | 100% | R15C (CGT→TGT) | sdhE ← | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
RA | 3,058,585 | C→T | 30.4% | intergenic (‑175/+81) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
RA | 3,150,120 | T→C | 100% | F153F (TTT→TTC) | yghA → | putative oxidoreductase |
RA | 3,165,015 | T→A | 100% | D320V (GAT→GTT) | parC ← | DNA topoisomerase IV, subunit A |
RA | 3,332,822 | G→A | 16.9% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
RA | 3,332,823 | T→C | 16.3% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
RA | 3,443,086 | T→A | 100% | N338Y (AAC→TAC) | secY ← | preprotein translocase membrane subunit |
RA | 3,452,057 | A→T | 100% | I77N (ATC→AAC) | rplD ← | 50S ribosomal subunit protein L4 |
RA | 3,477,434 | T→C | 100% | intergenic (‑15/‑206) | fkpA ← / → slyX | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/phi X174 lysis protein |
RA | 3,524,413 | A→G | 100% | I515V (ATT→GTT) | mrcA → | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
RA | 3,541,962 | T→G | 100% | I519S (ATC→AGC) | feoB → | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
RA | 3,597,846 | (T)5→4 | 100% | intergenic (‑286/‑138) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
RA | 3,622,796 | T→G | 100% | L1202R (CTG→CGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
RA | 3,648,042 | T→C | 100% | intergenic (‑254/‑486) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
RA | 3,669,340 | A→G | 100% | intergenic (‑152/‑252) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,669,920 | A→G | 100% | E110G (GAA→GGA) | treF → | cytoplasmic trehalase |
RA | 3,705,970 | G→A | 21.8% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,971 | C→A | 22.0% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,978 | A→C | 23.2% | intergenic (‑188/+120) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,984 | T→G | 31.4% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,705,985 | T→C | 31.4% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,706,017 | C→T | 23.1% | intergenic (‑227/+81) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,706,028 | T→C | 15.8% | intergenic (‑238/+70) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,706,048 | G→T | 25.9% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
RA | 3,708,410 | T→A | 100% | intergenic (‑705/+206) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
RA | 3,770,087 | C→A | 100% | pseudogene (55/114 nt) | yibU → | pseudogene, H repeat‑associated protein |
RA | 3,805,475 | T→C | 100% | N159S (AAT→AGT) | waaP ← | kinase that phosphorylates core heptose of lipopolysaccharide |
RA | 3,840,547 | T→C | 100% | intergenic (+39/+2) | yicS → / ← nepI | putative periplasmic protein/putative transporter |
RA | 3,853,909 | A→G | 100% | intergenic (+267/‑13) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
RA | 3,910,662 | A→T | 100% | D288E (GAT→GAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
RA | 3,920,809 | G→A | 15.8% | P27L (CCG→CTG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
RA | 3,927,735 | Δ1 bp | 100% | coding (581/993 nt) | asnA → | asparagine synthetase A |
RA | 3,950,468 | G→T | 100% | intergenic (+48/‑39) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
RA | 3,971,690 | A→C | 100% | Q144P (CAG→CCG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
RA | 4,017,924 | G→A | 100% | D198N (GAC→AAC) | rmuC → | DNA recombination protein |
RA | 4,022,987 | G→T | 33.0% | A84A (GCG→GCT) | tatC → | TatABCE protein translocation system subunit |
RA | 4,051,259 | G→T | 20.4% | intergenic (‑494/‑88) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
RA | 4,051,262 | A→C | 18.1% | intergenic (‑497/‑85) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
RA | 4,098,512 | C→A | 100% | R259R (CGC→CGA) | rhaS → | transcriptional activator of rhaBAD and rhaT |
RA | 4,152,760 | G→T | 100% | N113K (AAC→AAA) | ppc ← | phosphoenolpyruvate carboxylase |
RA | 4,168,540 | T→A | 100% | intergenic (+93/‑101) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,177,171 | T→A | 16.8% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
RA | 4,177,172 | T→A | 15.8% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
RA | 4,178,296 | A→T | 100% | intergenic (+8/‑151) | nusG → / → rplK | transcription termination factor/50S ribosomal subunit protein L11 |
RA | 4,188,787 | A→T | 34.0% | E1146D (GAA→GAT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,227,550 | G→A | 15.3% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
RA | 4,227,555 | A→T | 15.5% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
RA | 4,227,560 | T→C | 15.0% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
RA | 4,235,689:1 | +A | 100% | intergenic (+282/‑217) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
RA | 4,238,726 | A→G | 17.7% | I365V (ATT→GTT) | yjbH → | DUF940 family extracellular polysaccharide protein |
JC | 4,242,942 | Δ66 bp | 100% | coding (510‑575/891 nt) | malG ← | maltose transporter subunit |
RA | 4,279,370 | G→T | 100% | A298S (GCA→TCA) | ghxP → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
RA | 4,289,526 | A→G | 100% | K94K (AAA→AAG) | nrfB → | nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
RA | 4,296,060 | C→T | 32.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,340,287 | G→A | 100% | L79F (CTT→TTT) | adiA ← | arginine decarboxylase |
RA | 4,352,460 | T→G | 100% | intergenic (+103/‑124) | yjdJ → / → ghoS | GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA |
RA | 4,358,482 | T→A | 18.5% | I46F (ATC→TTC) | cadA ← | lysine decarboxylase, acid‑inducible |
RA | 4,360,814 | T→G | 100% | Y374S (TAC→TCC) | cadC ← | cadBA operon transcriptional activator |
JC | 4,370,611 | Δ5 bp | 100% | intergenic (‑199/‑73) | yjeH ← / → groS | putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
RA | 4,478,879 | T→C | 100% | V136A (GTT→GCT) | rraB → | protein inhibitor of RNase E |
RA | 4,490,055 | T→G | 100% | E3D (GAA→GAC) | yjgR ← | DUF853 family protein with NTPase fold |
RA | 4,500,814 | Δ1 bp | 100% | intergenic (‑23/‑446) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
RA | 4,503,627 | A→G | 31.5% | intergenic (‑196/‑431) | insG ← / → yjhB | IS4 transposase/putative MFS transporter, membrane protein |
RA | 4,520,500 | Δ1 bp | 16.8% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
RA | 4,520,504:1 | +T | 16.9% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
RA | 4,547,319 | C→A | 100% | R742S (CGT→AGT) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
RA | 4,615,859 | T→G | 100% | T403P (ACC→CCC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
RA | 4,627,837 | A→T | 38.1% | I175F (ATC→TTC) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
RA | 4,631,700 | T→C | 100% | L323P (CTT→CCT) | slt → | lytic murein transglycosylase, soluble |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3423708–3424234 | 3424593–3424238 | 5–886 | 61 [60] | [58] 61 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 16653 | NA (NA) | 15 (0.150) | 9/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
* | ? | NC_000913 | 19879 = | NA (NA) | 9 (0.090) | 5/172 | NT | NA | noncoding (685/768 nt) | IS1 | repeat region |
? | NC_000913 | 19905 = | NA (NA) | noncoding (659/768 nt) | IS1 | repeat region | |||||
* | ? | NC_000913 | 50327 = | NA (NA) | 7 (0.070) | 3/164 | NT | NA | noncoding (1/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 50360 = | NA (NA) | noncoding (34/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 149687 | 84 (0.780) | 15 (0.160) | 11/152 | NT | 16.2% | intergenic (‑86/+28) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein |
? | NC_000913 | = 149698 | 84 (0.910) | intergenic (‑97/+17) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein | |||||
* | ? | NC_000913 | = 224286 | NA (NA) | 5 (0.050) | 4/166 | NT | NA | noncoding (516/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | = 224304 | NA (NA) | noncoding (534/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 224572 = | NA (NA) | 5 (0.050) | 5/170 | NT | NA | noncoding (802/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | 224598 = | NA (NA) | noncoding (828/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 225078 = | NA (NA) | 37 (0.370) | 11/164 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 225154 = | NA (NA) | 31 (0.300) | 14/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 225889 = | NA (NA) | 38 (0.380) | 15/164 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 225998 | NA (NA) | 32 (0.310) | 11/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 226704 = | NA (NA) | 22 (0.210) | 5/170 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 227242 = | NA (NA) | 23 (0.230) | 5/166 | NT | NA | noncoding (1484/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 227264 = | NA (NA) | noncoding (1506/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 227444 | NA (NA) | 29 (0.280) | 14/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 228016 = | NA (NA) | 38 (0.380) | 8/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 228022 | NA (NA) | 32 (0.320) | 8/164 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 228219 = | NA (NA) | 9 (0.090) | 5/166 | NT | NA | noncoding (2461/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | 228248 = | NA (NA) | noncoding (2490/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | = 228224 | NA (NA) | 22 (0.220) | 10/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
* | ? | NC_000913 | 247464 = | NA (NA) | 7 (0.070) | 4/168 | NT | NA | noncoding (7/84 nt) | REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 247490 = | NA (NA) | noncoding (33/84 nt) | REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 257907 | 0 (0.000) | 120 (1.220) | 74/162 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
* | ? | NC_000913 | = 258586 | NA (NA) | 28 (0.270) | 7/168 | NT | NA | noncoding (90/768 nt) | IS1 | repeat region |
? | NC_000913 | = 279852 | NA (NA) | noncoding (79/768 nt) | IS1 | repeat region | |||||
* | ? | NC_000913 | 274347 = | NA (NA) | 30 (0.300) | 9/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 274384 = | NA (NA) | 28 (0.270) | 8/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 274531 | NA (NA) | 7 (0.070) | 5/164 | NT | NA | noncoding (619/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 274551 | NA (NA) | noncoding (599/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 274695 | NA (NA) | 17 (0.160) | 9/170 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 274965 = | NA (NA) | 36 (0.340) | 14/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 275005 = | NA (NA) | 31 (0.300) | 10/172 | NT | NA | noncoding (145/1195 nt) | IS5 | repeat region |
? | NC_000913 | 275029 = | NA (NA) | noncoding (121/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 275007 | NA (NA) | 59 (0.560) | 12/172 | NT | NA | noncoding (143/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 277706 | NA (NA) | 9 (0.090) | 7/164 | NT | NA | noncoding (32/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 277737 | NA (NA) | noncoding (63/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 315265 | 71 (0.660) | 11 (0.110) | 6/166 | NT | 20.5% | noncoding (37/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 566835 | 19 (0.190) | noncoding (59/1258 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | 315563 = | NA (NA) | 18 (0.190) | 11/158 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 315572 | NA (NA) | 18 (0.190) | 8/158 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | 315642 = | NA (NA) | 22 (0.220) | 9/168 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
? | NC_000913 | 315671 = | NA (NA) | noncoding (443/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 315646 | NA (NA) | 14 (0.140) | 8/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | 315892 = | NA (NA) | 13 (0.120) | 7/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 315938 | NA (NA) | 8 (0.080) | 4/166 | NT | NA | noncoding (710/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 315949 | NA (NA) | noncoding (721/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 316106 | NA (NA) | 4 (0.040) | 4/168 | NT | NA | noncoding (878/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 316141 | NA (NA) | noncoding (913/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | = 316201 | NA (NA) | 18 (0.190) | 9/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
* | ? | NC_000913 | 343971 = | 91 (0.840) | 16 (0.170) | 11/158 | NT | 17.1% | intergenic (+38/‑205) | yahK/yahL | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein |
? | NC_000913 | 344009 = | 74 (0.770) | intergenic (+76/‑167) | yahK/yahL | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein | |||||
* | ? | NC_000913 | = 349938 | NA (NA) | 14 (0.140) | 5/164 | NT | NA | noncoding (334/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
? | NC_000913 | = 349969 | NA (NA) | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
* | ? | NC_000913 | = 354733 | NA (NA) | 14 (0.140) | 10/164 | NT | NA | noncoding (135/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
? | NC_000913 | = 354765 | NA (NA) | noncoding (167/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
* | ? | NC_000913 | 381292 = | NA (NA) | 23 (0.240) | 21/160 | NT | NA | noncoding (33/1331 nt) | IS2 | repeat region |
? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | 381663 = | NA (NA) | 24 (0.240) | 9/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 381669 | NA (NA) | 25 (0.250) | 12/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 381910 | NA (NA) | 35 (0.350) | 8/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | 382110 = | NA (NA) | 23 (0.230) | 8/168 | NT | NA | noncoding (851/1331 nt) | IS2 | repeat region |
? | NC_000913 | 382141 = | NA (NA) | noncoding (882/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 382242 | NA (NA) | 15 (0.150) | 8/166 | NT | NA | noncoding (983/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 382260 | NA (NA) | noncoding (1001/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | 382282 = | NA (NA) | 22 (0.220) | 13/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 382287 | NA (NA) | 6 (0.060) | 4/166 | NT | NA | noncoding (1028/1331 nt) | IS2 | repeat region |
? | NC_000913 | = 382306 | NA (NA) | noncoding (1047/1331 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 409055 | NA (NA) | 13 (0.130) | 7/164 | NT | NA | noncoding (4/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 409088 | NA (NA) | noncoding (37/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 409056 = | NA (NA) | 8 (0.080) | 5/164 | NT | NA | noncoding (5/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 409089 = | NA (NA) | intergenic (+139/+19) | ykiA/rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function | |||||
* | ? | NC_000913 | 474269 = | NA (NA) | 14 (0.140) | 9/166 | NT | NA | intergenic (+17/+32) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
* | ? | NC_000913 | = 705938 | NA (NA) | 11 (0.110) | 7/166 | NT | NA | intergenic (+48/‑155) | nagE/glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
? | NC_000913 | = 705965 | NA (NA) | intergenic (+75/‑128) | nagE/glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase | |||||
* | ? | NC_000913 | 729837 = | NA (NA) | 12 (0.110) | 6/172 | NT | NA | coding (255/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 729868 = | NA (NA) | coding (286/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | = 730045 | NA (NA) | 17 (0.170) | 10/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 805804 = | NA (NA) | 13 (0.130) | 6/164 | NT | NA | noncoding (1/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
? | NC_000913 | 805836 = | NA (NA) | noncoding (33/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
* | ? | NC_000913 | = 819757 | NA (NA) | 6 (0.060) | 5/166 | NT | NA | intergenic (+10/‑127) | moaE/ybhL | molybdopterin synthase, large subunit/putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein |
? | NC_000913 | = 819784 | NA (NA) | noncoding (27/27 nt) | REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 937227 | NA (NA) | 6 (0.060) | 4/162 | NT | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 1269694 | 72 (0.670) | 11 (0.110) | 5/166 | NT | 16.3% | intergenic (‑419/+9) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small |
? | NC_000913 | = 1270193 | 46 (0.460) | intergenic (‑383/+45) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small | |||||
* | ? | NC_000913 | = 1299498 | 0 (0.000) | 103 (1.000) | 72/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
* | ? | NC_000913 | = 1432761 | NA (NA) | 9 (0.090) | 6/170 | NT | NA | coding (351/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
? | NC_000913 | = 1432785 | NA (NA) | coding (375/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
* | ? | NC_000913 | = 1445179 | 87 (0.800) | 15 (0.150) | 6/160 | NT | 15.5% | coding (2129/2640 nt) | ydbH | putative membrane‑anchored protein, function unknown |
? | NC_000913 | = 1445190 | 85 (0.880) | coding (2140/2640 nt) | ydbH | putative membrane‑anchored protein, function unknown | |||||
* | ? | NC_000913 | = 1468681 | NA (NA) | 66 (1.220) +44 bp |
15/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
* | ? | NC_000913 | = 1508794 | NA (NA) | 8 (0.080) | 5/166 | NT | NA | noncoding (4/33 nt) | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | = 1508823 | NA (NA) | noncoding (33/33 nt) | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 1557071 = | NA (NA) | 6 (0.060) | 5/170 | NT | NA | noncoding (9/19 nt) | REP122 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP122 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 1557101 = | NA (NA) | intergenic (+45/+11) | osmC/ddpF | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin/D,D‑dipeptide ABC transporter ATPase | |||||
* | ? | NC_000913 | 1886815 = | 93 (0.860) | 15 (0.160) | 8/156 | NT | 16.4% | intergenic (+5/+49) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
? | NC_000913 | 1886858 = | 71 (0.750) | intergenic (+48/+6) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D | |||||
* | ? | NC_000913 | 1929923 = | NA (NA) | 8 (0.080) | 6/172 | NT | NA | noncoding (1/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 1929955 = | NA (NA) | noncoding (33/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 2066832 | 0 (0.000) | 22 (0.230) | 8/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 2133462 = | NA (NA) | 4 (0.040) | 3/164 | NT | NA | noncoding (31/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 3639209 = | NA (NA) | noncoding (1/98 nt) | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | 2219625 = | NA (NA) | 6 (0.060) | 5/164 | NT | NA | noncoding (1/34 nt) | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences |
? | NC_000913 | 2219655 = | NA (NA) | noncoding (31/34 nt) | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | = 2304653 | 37 (0.340) | 30 (0.300) | 9/164 | NT | 63.8% | noncoding (237/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913 | = 2304669 | 0 (0.000) | noncoding (253/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
* | ? | NC_000913 | 2304654 = | NA (NA) | 8 (0.080) | 4/164 | NT | 100% | noncoding (238/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
? | NC_000913 | 2304670 = | 0 (0.000) | noncoding (254/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
* | ? | NC_000913 | 2306932 = | 104 (0.960) | 17 (0.170) | 7/164 | NT | 15.7% | intergenic (‑178/+40) | mqo/yojI | malate dehydrogenase, FAD/NAD(P)‑binding domain/microcin J25 efflux ABC transporter permease/ATPase |
? | NC_000913 | 2306961 = | 87 (0.870) | intergenic (‑207/+11) | mqo/yojI | malate dehydrogenase, FAD/NAD(P)‑binding domain/microcin J25 efflux ABC transporter permease/ATPase | |||||
* | ? | NC_000913 | = 2405625 | 81 (0.750) | 14 (0.140) | 8/164 | NT | 15.8% | intergenic (‑553/+78) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
? | NC_000913 | = 2405660 | 75 (0.750) | intergenic (‑588/+43) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
* | ? | NC_000913 | 2568139 = | NA (NA) | 7 (0.070) | 4/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
* | ? | NC_000913 | 2568139 = | NA (NA) | 10 (0.100) | 6/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
? | NC_000913 | 3231282 = | NA (NA) | noncoding (31/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
* | ? | NC_000913 | 2617939 = | NA (NA) | 7 (0.070) | 5/164 | NT | NA | intergenic (+2/+136) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation |
? | NC_000913 | 2617967 = | NA (NA) | intergenic (+30/+108) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation | |||||
* | ? | NC_000913 | = 2651755 | 84 (0.780) | 15 (0.150) | 11/162 | NT | 15.5% | coding (533/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
? | NC_000913 | = 2651772 | 87 (0.890) | coding (516/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein | |||||
* | ? | NC_000913 | = 2662429 | 60 (0.550) | 11 (0.100) | 6/174 | NT | 15.8% | noncoding (121/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
? | NC_000913 | = 2662581 | NA (NA) | intergenic (‑450/+2) | iscR/trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
* | ? | NC_000913 | = 2662541 | NA (NA) | 14 (0.140) | 7/164 | NT | NA | noncoding (233/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
? | NC_000913 | = 2662574 | NA (NA) | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
* | ? | NC_000913 | 2727847 = | NA (NA) | 15 (0.150) | 6/170 | NT | NA | noncoding (1338/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
? | NC_000913 | 2727872 = | NA (NA) | noncoding (1313/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2727891 = | NA (NA) | 46 (0.460) | 11/166 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2728214 = | NA (NA) | 40 (0.390) | 12/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
* | ? | NC_000913 | 2798052 = | NA (NA) | 11 (0.100) | 7/174 | NT | NA | intergenic (+8/+39) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated |
? | NC_000913 | 2798084 = | NA (NA) | intergenic (+40/+7) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
* | ? | NC_000913 | 2808135 = | NA (NA) | 11 (0.110) | 8/164 | NT | NA | noncoding (5/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 2808165 = | NA (NA) | noncoding (35/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 2837464 | NA (NA) | 11 (0.110) | 7/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
* | ? | NC_000913 | 3203112 = | NA (NA) | 16 (0.160) | 11/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
* | ? | NC_000913 | 3296997 = | NA (NA) | 10 (0.100) | 8/168 | NT | NA | intergenic (+13/+101) | yraP/yraQ | outer membrane lipoprotein/putative inner membrane permease |
? | NC_000913 | 3297033 = | NA (NA) | noncoding (35/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 3299608 | 108 (1.000) | 20 (0.210) | 7/158 | NT | 17.2% | coding (308/444 nt) | yhbP | UPF0306 family protein |
? | NC_000913 | = 3299630 | 97 (1.010) | coding (286/444 nt) | yhbP | UPF0306 family protein | |||||
* | ? | NC_000913 | = 3392342 | NA (NA) | 13 (0.130) +CTACAAACG |
6/160 | NT | NA | noncoding (267/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
? | NC_000913 | = 3392393 | NA (NA) | intergenic (‑365/+65) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein | |||||
* | ? | NC_000913 | 3470277 = | NA (NA) | 11 (0.110) | 7/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
* | ? | NC_000913 | 3470738 = | NA (NA) | 9 (0.090) | 5/168 | NT | NA | coding (592/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
? | NC_000913 | 3470767 = | NA (NA) | coding (563/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
* | ? | NC_000913 | = 3471082 | 50 (0.460) | 16 (0.160) | 10/168 | NT | 30.4% | coding (248/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
? | NC_000913 | = 3471110 | 26 (0.250) | coding (220/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
* | ? | NC_000913 | 3619655 = | NA (NA) | 10 (0.100) | 7/168 | NT | 100% | coding (464/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 3619677 = | 0 (0.000) | coding (486/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 3620227 = | NA (NA) | 10 (0.100) | 7/166 | NT | 100% | coding (1036/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 3620250 = | 0 (0.000) | coding (1059/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 3620569 = | NA (NA) | 19 (0.190) | 8/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
* | ? | NC_000913 | 3650712 = | NA (NA) | 8 (0.080) | 5/164 | NT | NA | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | 3650744 = | NA (NA) | noncoding (33/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 3674441 | NA (NA) | 12 (0.120) | 9/164 | NT | NA | noncoding (61/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 3674473 | NA (NA) | noncoding (93/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 3754860 = | NA (NA) | 5 (0.050) | 5/164 | NT | NA | noncoding (1/82 nt) | REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 3754890 = | NA (NA) | noncoding (31/82 nt) | REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 3898629 = | NA (NA) | 8 (0.080) | 4/162 | NT | NA | intergenic (+20/+42) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
? | NC_000913 | 3898659 = | NA (NA) | intergenic (+50/+12) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase | |||||
* | ? | NC_000913 | 4040482 = | NA (NA) | 48 (0.480) | 14/166 | NT | NA | intergenic (+59/‑35) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
* | ? | NC_000913 | = 4086865 | 96 (0.890) | 20 (0.210) | 9/154 | NT | 17.9% | intergenic (+16/‑137) | fdhD/yiiG | formate dehydrogenase formation protein/DUF3829 family lipoprotein |
? | NC_000913 | = 4086880 | 100 (1.070) | intergenic (+31/‑122) | fdhD/yiiG | formate dehydrogenase formation protein/DUF3829 family lipoprotein | |||||
* | ? | NC_000913 | 4103511 = | NA (NA) | 6 (0.060) | 5/164 | NT | NA | noncoding (5/84 nt) | REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 4103544 = | NA (NA) | noncoding (38/84 nt) | REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | = 4171607 | 34 (0.310) | 60 (0.600) | 12/166 | NT | 65.4% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
* | ? | NC_000913 | = 4176631 | 9 (0.080) | 3 (0.030) | 3/168 | NT | 26.1% | coding (688/1185 nt) | tufB | translation elongation factor EF‑Tu 2 |
? | NC_000913 | = 4176644 | NA (NA) | coding (701/1185 nt) | tufB | translation elongation factor EF‑Tu 2 | |||||
* | ? | NC_000913 | 4200145 = | 96 (0.890) | 14 (0.150) | 10/156 | NT | 15.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
? | NC_000913 | 4200182 = | 71 (0.750) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
* | ? | NC_000913 | 4209894 = | NA (NA) | 6 (0.060) | 4/156 | NT | 100% | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
? | NC_000913 | 4209912 = | 0 (0.000) | intergenic (+63/‑131) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
* | ? | NC_000913 | 4235376 = | NA (NA) | 9 (0.100) | 6/156 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
? | NC_000913 | 4235411 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
* | ? | NC_000913 | = 4254000 | NA (NA) | 7 (0.070) | 6/164 | NT | NA | noncoding (100/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
? | NC_000913 | = 4254030 | NA (NA) | noncoding (130/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 4296093 | 97 (0.900) | 17 (0.170) | 7/164 | NT | 16.0% | noncoding (259/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
? | NC_000913 | = 4296173 | NA (NA) | noncoding (339/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
* | ? | NC_000913 | = 4296144 | 21 (0.190) | 6 (0.060) | 4/164 | NT | 23.7% | noncoding (310/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
? | NC_000913 | = 4296160 | NA (NA) | noncoding (326/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
* | ? | NC_000913 | 4344813 = | NA (NA) | 6 (0.060) | 4/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 4344880 | NA (NA) | 4 (0.040) | 4/166 | NT | NA | noncoding (66/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
? | NC_000913 | = 4344908 | NA (NA) | noncoding (94/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
* | ? | NC_000913 | = 4457231 | NA (NA) | 11 (0.110) | 7/164 | NT | NA | noncoding (47/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | = 4457264 | NA (NA) | noncoding (80/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 4460417 = | NA (NA) | 11 (0.110) | 9/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
* | ? | NC_000913 | 4486252 = | 81 (0.750) | 17 (0.170) | 10/162 | NT | 17.7% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
? | NC_000913 | 4486291 = | 84 (0.850) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease |