breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 36,231 T→C 100% intergenic (‑69/+40) caiD ← / ← caiC carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase
RA 53,012 A→G 100% G135G (GGT→GGC pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 88,208 A→T 100% T61S (ACA→TCA)  cra → transcriptional repressor‑activator for carbon metabolism
RA 107,553 (T)9→8 100% intergenic (+79/‑152) lpxC → / → secM UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation
RA 111,013 G→A 17.2% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 111,016 T→C 17.0% intergenic (+32/‑28) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 129,360 G→T 100% intergenic (+24/+47) lpd → / ← yacH dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase/DUF3300 family protein
RA 162,973 G→A 100% C290Y (TGT→TAT)  hrpB → putative ATP‑dependent helicase
RA 178,902 C→T 100% L84L (TTG→TTA mtn ← 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase
RA 179,327 A→T 100% I31F (ATC→TTC)  dgt → deoxyguanosine triphosphate triphosphohydrolase
RA 179,442 A→T 100% H69L (CAC→CTC)  dgt → deoxyguanosine triphosphate triphosphohydrolase
MC JC 190,553 Δ14 bp 100% coding (680‑693/726 nt) rpsB → 30S ribosomal subunit protein S2
RA 207,483 A→C 15.9% V786V (GTA→GTC dnaE → DNA polymerase III alpha subunit
RA 207,486 G→T 15.8% M787I (ATG→ATT dnaE → DNA polymerase III alpha subunit
RA 216,568 C→T 100% A146T (GCC→ACC)  yaeF ← putative lipoprotein
RA 232,196 G→T 100% G91C (GGC→TGC)  yafE → putative S‑adenosyl‑L‑methionine‑dependent methyltransferase
RA 236,541 C→T 100% R159* (CGA→TGA)  dnaQ → DNA polymerase III epsilon subunit
RA 252,589 G→C 15.8% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 252,594 G→C 15.4% W98C (TGG→TGC yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 265,418 A→G 100% R42R (CGT→CGC ykfF ← CP4‑6 prophage; uncharacterized protein
RA 281,581 G→A 100% R135W (CGG→TGG)  yagA ← CP4‑6 prophage; putative DNA‑binding transcriptional regulator
RA 317,566 G→A 17.6% pseudogene (128/129 nt) ykgQ → pseudogene, putative dehydrogenase
RA 362,884 A→G 100% L99S (TTA→TCA)  lacY ← lactose permease
RA 364,024 C→T 100% R761H (CGC→CAC)  lacZ ← beta‑D‑galactosidase
RA 367,830 G→A 100% Y197Y (TAC→TAT mhpR ← mhp operon transcriptional activator
RA 383,477 G→A 100% G153G (GGC→GGT yaiP ← putative family 2 glycosyltransferase
RA 400,214 T→C 100% D237G (GAC→GGC)  ddlA ← D‑alanine‑D‑alanine ligase A
RA 416,389 (C)5→4 100% coding (564/1203 nt) sbcD ← exonuclease, dsDNA, ATP‑dependent
RA 428,188 G→T 100% R181L (CGC→CTC)  secD → SecYEG protein translocase auxillary subunit
RA 459,256 T→C 100% D123D (GAT→GAC lon → DNA‑binding ATP‑dependent protease La
RA 459,642 A→G 100% E252G (GAA→GGA)  lon → DNA‑binding ATP‑dependent protease La
RA 481,228 C→A 15.2% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 497,139:1 (T)5→6 100% intergenic (+145/‑36) htpG → / → adk protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase
RA 520,993 T→G 100% V193G (GTC→GGC)  ybbP → putative ABC transporter permease
RA 532,380 A→G 100% intergenic (‑159/‑71) allS ← / → allA allD operon transcriptional activator/ureidoglycolate lyase, releasing urea
RA 584,262:1 (A)7→8 100% coding (582/750 nt) appY → global transcriptional activator; DLP12 prophage
RA 649,964:1 +G 100% coding (527/909 nt) citE ← citrate lyase, citryl‑ACP lyase (beta) subunit
RA 661,369 T→C 100% N4D (AAT→GAT)  ybeF ← LysR family putative transcriptional regulator
RA 662,636 T→G 100% T3P (ACC→CCC)  ybeD ← UPF0250 family protein
RA 681,694 A→G 18.0% intergenic (+31/+29) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,699 T→A 18.4% intergenic (+36/+24) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,700 T→A 17.7% intergenic (+37/+23) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 681,705 C→T 18.6% intergenic (+42/+18) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 700,805 A→T 100% C264S (TGC→AGC)  nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
RA 712,150 A→T 100% L218Q (CTG→CAG)  ybfF ← acyl‑CoA esterase
RA 720,946 C→T 100% intergenic (+106/+110) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 750,896 Δ1 bp 100% coding (1274/2448 nt) ybgQ ← putative outer membrane protein
RA 772,209 C→A 100% T251N (ACC→AAC)  cydA → cytochrome d terminal oxidase, subunit I
RA 824,572 T→A 15.2% intergenic (‑75/‑58) ybhP ← / → ybhQ endo/exonuclease/phosphatase family protein/inner membrane protein
RA 824,573 T→A 15.2% intergenic (‑76/‑57) ybhP ← / → ybhQ endo/exonuclease/phosphatase family protein/inner membrane protein
RA 834,352 A→T 100% Q428L (CAG→CTG)  dinG → ATP‑dependent DNA helicase
RA 851,094 G→A 100% P502S (CCG→TCG)  opgE ← OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 869,724 A→C 15.3% N105T (AAC→ACC)  gsiB → glutathione ABC transporter periplasmic binding protein
RA 882,722 G→A 100% R5C (CGC→TGC)  deoR ← deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx
RA 894,155 T→G 100% D124E (GAT→GAG potF → putrescine ABC transporter periplasmic binding protein
RA 905,720 C→A 100% L270M (CTG→ATG)  amiD → 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase, Zn‑dependent; OM lipoprotein
RA 931,952 C→T 100% V33V (GTG→GTA trxB ← thioredoxin reductase, FAD/NAD(P)‑binding
RA 933,387 C→T 100% A55V (GCC→GTC)  ftsK → DNA translocase at septal ring sorting daughter chromsomes
RA 966,368 A→G 100% A683A (GCA→GCG ycaI → ComEC family inner membrane protein
RA 975,083 T→A 100% D255E (GAT→GAA mukF → chromosome condensin MukBEF, kleisin‑like subunit, binds calcium
RA 1,017,296 A→C 100% I335S (ATC→AGC)  ycbZ ← putative peptidase
RA 1,036,094 A→G 15.2% I109V (ATC→GTC)  hyaD → hydrogenase 1 maturation protease
RA 1,036,103 C→T 16.0% H112Y (CAT→TAT)  hyaD → hydrogenase 1 maturation protease
RA 1,073,307 Δ1 bp 100% coding (705/1149 nt) rutA ← pyrimidine oxygenase, FMN‑dependent
RA 1,097,209 T→G 100% intergenic (+380/+356) ycdU → / ← serX putative inner membrane protein/tRNA‑Ser
RA 1,100,233 G→A 100% intergenic (+39/‑63) ycdY → / → ycdZ redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein
RA 1,111,377 A→G 100% D172G (GAT→GGT)  opgH → OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist
RA 1,143,125 C→T 100% D415N (GAC→AAC)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,170,338 (A)6→5 100% coding (37/963 nt) ldtC ← L,D‑transpeptidase linking Lpp to murein
RA 1,197,340 T→C 100% T65A (ACT→GCT)  ymfD ← e14 prophage; putative SAM‑dependent methyltransferase
RA 1,197,739 A→G 100% S167P (TCC→CCC)  ymfE ← e14 prophage; putative inner membrane protein
RA 1,206,070 T→C 15.9% pseudogene (340/412 nt) beeE → pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA 1,207,981 G→A 100% A161T (GCC→ACC)  stfP → e14 prophage; uncharacterized protein
RA 1,232,481 C→T 19.2% intergenic (+27/+19) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,232,484 A→G 18.4% intergenic (+30/+16) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,292,944 T→C 100% intergenic (‑22/‑583) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
JC JC 1,293,196 IS5 (+) +4 bp 100% intergenic (‑274/‑328) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
RA 1,298,278 T→A 18.2% intergenic (‑157/‑320) adhE ← / → ychE fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein
RA 1,298,281 T→A 18.3% intergenic (‑160/‑317) adhE ← / → ychE fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein
RA 1,298,284 T→A 18.5% intergenic (‑163/‑314) adhE ← / → ychE fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein
RA 1,307,634 T→A 100% I338F (ATC→TTC)  clsA ← cardiolipin synthase 1
RA 1,311,831 C→T 15.3% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,369,793 G→A 100% E35E (GAG→GAA pspE → thiosulfate:cyanide sulfurtransferase (rhodanese)
RA 1,382,820 T→C 100% Y292H (TAT→CAT)  ompG → outer membrane porin G
RA 1,399,677 C→T 100% intergenic (‑151/+44) fnr ← / ← ogt oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase
RA 1,401,844 A→G 100% I471T (ATC→ACC)  abgB ← p‑aminobenzoyl‑glutamate hydrolase, B subunit
RA 1,406,093 A→G 18.4% I39V (ATC→GTC)  smrA → DNA endonuclease
RA 1,406,098 C→T 18.1% D40D (GAC→GAT smrA → DNA endonuclease
RA 1,407,859 A→G 100% intergenic (‑64/‑191) ydaM ← / → ydaN diguanylate cyclase, csgD regulator/putative Zn(II) transporter
RA 1,433,718 T→C 100% intergenic (‑44/+273) pinR ← / ← ynaE Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage
RA 1,434,459 C→T 100% intergenic (‑235/+499) ynaE ← / ← ttcC cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
RA 1,435,737 G→A 23.7% intergenic (‑118/+23) uspF ← / ← ompN stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific
RA 1,441,833 G→C 15.2% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,446,357:1 +T 17.3% intergenic (+151/+21) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,446,362 Δ1 bp 17.7% intergenic (+156/+16) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,448,947 A→C 100% T477P (ACG→CCG)  feaB → phenylacetaldehyde dehydrogenase
RA 1,470,558 G→A 100% pseudogene (42/3497 nt) ydbA → pseudogene, autotransporter homolog; interrupted by IS2 and IS30
RA 1,493,774 A→G 100% L435L (TTA→TTG trg → methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
RA 1,501,912 T→A 100% I117I (ATT→ATA tehB → tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein
RA 1,509,243 C→T 15.5% intergenic (‑179/‑43) yncJ ← / → hicA uncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system
RA 1,509,246 A→G 15.2% intergenic (‑182/‑40) yncJ ← / → hicA uncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system
RA 1,530,076:1 (A)7→8 100% coding (155/483 nt) ydcD → putative immunity protein for RhsE
RA 1,547,395 A→G 100% intergenic (‑226/‑6) yddG ← / → fdnG aromatic amino acid exporter/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible
RA 1,555,324 A→G 100% S116P (TCT→CCT)  maeA ← malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme
RA 1,580,094 C→T 100% D233N (GAT→AAT)  ydeM ← putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,658,592 C→T 100% A175V (GCC→GTC)  ynfE → putative selenate reductase, periplasmic
RA 1,665,195:1 (T)7→8 100% intergenic (+75/‑120) dmsD → / → clcB twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter
RA 1,681,932 T→C 100% P33P (CCA→CCG ydgC ← GlpM family inner membrane protein
RA 1,707,029 A→G 100% V37V (GTA→GTG rsxC → SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
RA 1,712,306:1 (T)7→8 100% intergenic (+148/‑463) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,712,518 (C)6→5 100% intergenic (+360/‑251) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,728,444 C→A 100% T33N (ACC→AAC)  rnt → RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair
RA 1,795,227 A→T 15.9% intergenic (‑75/+26) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,229 A→T 15.8% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,827,031 T→A 100% D410V (GAT→GTT)  astB ← succinylarginine dihydrolase
RA 1,880,549 T→C 100% T71A (ACC→GCC)  leuE ← leucine efflux protein
RA 1,881,128 C→A 100% E228* (GAA→TAA)  dmlR ← transcriptional activator of dmlA
RA 1,946,790 T→G 100% G180G (GGT→GGG yebB → DUF830 family protein
RA 1,971,761 T→C 100% T311A (ACC→GCC)  tar ← methyl‑accepting chemotaxis protein II
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,983,761 C→T 100% E437K (GAA→AAA)  araG ← L‑arabinose ABC transporter ATPase
RA 1,985,112 C→G 15.0% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 2,071,321 A→G 100% intergenic (+110/‑218) yeeP → / → flu pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
RA 2,159,354 C→T 100% R323R (CGC→CGT mdtC → multidrug efflux system, subunit C
RA 2,161,946 A→G 100% A161A (GCA→GCG iceT → putative citrate/iron‑citrate/zinc‑citrate efflux transporter
RA 2,168,420 A→T 17.0% intergenic (‑114/‑292) yegR ← / → yegS uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA 2,168,423 A→T 15.8% intergenic (‑117/‑289) yegR ← / → yegS uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA 2,173,076 C→A 100% pseudogene (287/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,191,432 C→T 100% G72S (GGC→AGC)  yehC ← putative periplasmic pilin chaperone
RA 2,197,365 G→A 100% pseudogene (892/2847 nt) yehH → DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function
RA 2,210,811 C→T 100% pseudogene (1712/2001 nt) yehQ → pseudogene
RA 2,235,656 T→C 100% I131T (ATC→ACC)  preA → dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C
RA 2,246,800 A→G 100% intergenic (‑31/+263) cirA ← / ← lysP colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA 2,250,210 T→A 32.2% V165E (GTG→GAG)  yeiH → UPF0324 family inner membrane protein
RA 2,278,298 C→T 100% intergenic (‑61/+272) yejG ← / ← bcr uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter
RA 2,279,021 G→A 100% A247V (GCG→GTG)  bcr ← bicyclomycin/cysteine/sulfonamide efflux transporter
RA 2,307,386 A→T 100% D410E (GAT→GAA yojI ← microcin J25 efflux ABC transporter permease/ATPase
RA 2,323,286 C→T 15.2% intergenic (+35/‑161) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA 2,361,323 T→A 100% Q31L (CAG→CTG)  rhmD ← L‑rhamnonate dehydratase
RA 2,386,365 T→A 100% F169Y (TTC→TAC)  yfbL → putative M28A family peptidase
RA 2,411,637 Δ1 bp 100% coding (453/651 nt) yfbT ← sugar phosphatas
RA 2,420,727 G→A 100% G36D (GGC→GAC)  yfcG → GSH‑dependent disulfide bond oxidoreductase
RA 2,436,937 A→T 100% D305E (GAT→GAA pdxB ← erythronate‑4‑phosphate dehydrogenase
RA 2,441,682 A→C 15.2% intergenic (‑77/‑82) fabB ← / → mnmC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme
RA 2,469,656:1 (T)7→8 100% coding (526/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
RA 2,493,645 G→A 100% intergenic (‑391/+122) frc ← / ← yfdX formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein
RA 2,495,173 T→A 100% A40A (GCA→GCT yfdY ← DUF2545 family putative inner membrane protein
RA 2,521,967 C→A 100% A171S (GCG→TCG)  xapR ← transcriptional activator of xapAB
RA 2,525,135 (A)6→5 100% coding (9/765 nt) yfeN → putative outer membrane protein
RA 2,530,925 T→C 100% Q103Q (CAA→CAG zipA ← FtsZ stabilizer
RA 2,534,206 T→G 100% R47R (CGT→CGG ptsI → PEP‑protein phosphotransferase of PTS system (enzyme I)
RA 2,541,456 A→G 100% I75T (ATT→ACT)  cysW ← sulfate/thiosulfate ABC transporter permease
RA 2,560,321 C→T 15.6% A22V (GCT→GTT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,330 G→T 16.2% C25F (TGC→TTC)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,563,518:1 (A)5→6 100% intergenic (+401/‑74) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,564,501 T→C 25.2% intergenic (+129/‑22) yffR → / → yffS CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,564,525 G→A 100% M1M (ATG→ATA) † yffS → CPZ‑55 prophage; uncharacterized protein
RA 2,593,917 G→A 100% A648V (GCG→GTG)  tmcA ← elongator methionine tRNA (ac4C34) acetyltransferase
RA 2,600,288 C→T 100% S128L (TCG→TTG)  gcvR → transcriptional repressor, regulatory protein accessory to GcvA
RA 2,638,037 C→A 100% A206S (GCG→TCG)  bamB ← BamABCDE complex OM biogenesis lipoprotein
RA 2,653,367 G→A 15.6% intergenic (+28/+790) sseA → / ← sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
RA 2,653,372 T→C 15.1% intergenic (+33/+785) sseA → / ← sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
RA 2,707,320 A→T 15.3% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 16.8% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,758,577 G→T 100% N8K (AAC→AAA yfjH ← CP4‑57 prophage; uncharacterized protein
RA 2,777,363 T→C 100% F83F (TTT→TTC yfjZ → CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,810,756 G→A 100% intergenic (+77/‑14) ygaH → / → mprA putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,852,356 T→A 100% L74Q (CTG→CAG)  hypD → hydrogenase maturation protein
RA 2,867,164 C→T 100% A130T (GCG→ACG)  rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 2,887,352 T→A 100% intergenic (‑133/+226) ygcB ← / ← cysH Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
RA 2,900,481 G→T 100% intergenic (‑208/‑111) ygcW ← / → yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA 2,971,151 T→C 16.7% intergenic (+18/‑120) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,154 G→A 15.8% intergenic (+21/‑117) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,159 G→A 17.0% intergenic (+26/‑112) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 3,041,028 G→A 100% R15C (CGT→TGT)  sdhE ← flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair
RA 3,058,585 C→T 30.4% intergenic (‑175/+81) serA ← / ← rpiA D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive
RA 3,150,120 T→C 100% F153F (TTT→TTC yghA → putative oxidoreductase
RA 3,165,015 T→A 100% D320V (GAT→GTT)  parC ← DNA topoisomerase IV, subunit A
RA 3,332,822 G→A 16.9% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 16.3% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,443,086 T→A 100% N338Y (AAC→TAC)  secY ← preprotein translocase membrane subunit
RA 3,452,057 A→T 100% I77N (ATC→AAC)  rplD ← 50S ribosomal subunit protein L4
RA 3,477,434 T→C 100% intergenic (‑15/‑206) fkpA ← / → slyX FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/phi X174 lysis protein
RA 3,524,413 A→G 100% I515V (ATT→GTT)  mrcA → penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,541,962 T→G 100% I519S (ATC→AGC)  feoB → ferrous iron transporter protein B and GTP‑binding protein; membrane protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,597,846 (T)5→4 100% intergenic (‑286/‑138) livK ← / → panM leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis
RA 3,622,796 T→G 100% L1202R (CTG→CGG)  rhsB → Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
RA 3,648,042 T→C 100% intergenic (‑254/‑486) dinQ ← / → arsR UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor
RA 3,669,340 A→G 100% intergenic (‑152/‑252) yhjA ← / → treF putative cytochrome C peroxidase/cytoplasmic trehalase
RA 3,669,920 A→G 100% E110G (GAA→GGA)  treF → cytoplasmic trehalase
RA 3,705,970 G→A 21.8% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 22.0% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,978 A→C 23.2% intergenic (‑188/+120) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 31.4% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 31.4% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,017 C→T 23.1% intergenic (‑227/+81) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,028 T→C 15.8% intergenic (‑238/+70) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,048 G→T 25.9% intergenic (‑258/+50) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,708,410 T→A 100% intergenic (‑705/+206) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,770,087 C→A 100% pseudogene (55/114 nt) yibU → pseudogene, H repeat‑associated protein
RA 3,805,475 T→C 100% N159S (AAT→AGT)  waaP ← kinase that phosphorylates core heptose of lipopolysaccharide
RA 3,840,547 T→C 100% intergenic (+39/+2) yicS → / ← nepI putative periplasmic protein/putative transporter
RA 3,853,909 A→G 100% intergenic (+267/‑13) tisB → / → emrD toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein
RA 3,910,662 A→T 100% D288E (GAT→GAA pstS ← phosphate ABC transporter periplasmic binding protein
RA 3,920,809 G→A 15.8% P27L (CCG→CTG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,927,735 Δ1 bp 100% coding (581/993 nt) asnA → asparagine synthetase A
RA 3,950,468 G→T 100% intergenic (+48/‑39) ilvL → / → ilvX ilvG operon leader peptide/uncharacterized protein
RA 3,971,690 A→C 100% Q144P (CAG→CCG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 4,017,924 G→A 100% D198N (GAC→AAC)  rmuC → DNA recombination protein
RA 4,022,987 G→T 33.0% A84A (GCG→GCT tatC → TatABCE protein translocation system subunit
RA 4,051,259 G→T 20.4% intergenic (‑494/‑88) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,051,262 A→C 18.1% intergenic (‑497/‑85) yihA ← / → yihI cell division GTP‑binding protein/activator of Der GTPase
RA 4,098,512 C→A 100% R259R (CGC→CGA rhaS → transcriptional activator of rhaBAD and rhaT
RA 4,152,760 G→T 100% N113K (AAC→AAA ppc ← phosphoenolpyruvate carboxylase
RA 4,168,540 T→A 100% intergenic (+93/‑101) gltT → / → rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
RA 4,177,171 T→A 16.8% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,177,172 T→A 15.8% intergenic (+44/‑186) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,178,296 A→T 100% intergenic (+8/‑151) nusG → / → rplK transcription termination factor/50S ribosomal subunit protein L11
RA 4,188,787 A→T 34.0% E1146D (GAA→GAT rpoC → RNA polymerase, beta prime subunit
RA 4,227,550 G→A 15.3% intergenic (+39/‑181) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,227,555 A→T 15.5% intergenic (+44/‑176) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,227,560 T→C 15.0% intergenic (+49/‑171) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,235,689:1 +A 100% intergenic (+282/‑217) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA 4,238,726 A→G 17.7% I365V (ATT→GTT)  yjbH → DUF940 family extracellular polysaccharide protein
JC 4,242,942 Δ66 bp 100% coding (510‑575/891 nt) malG ← maltose transporter subunit
RA 4,279,370 G→T 100% A298S (GCA→TCA)  ghxP → guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter
RA 4,289,526 A→G 100% K94K (AAA→AAG nrfB → nitrite reductase, formate‑dependent, penta‑heme cytochrome c
RA 4,296,060 C→T 32.6% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,340,287 G→A 100% L79F (CTT→TTT)  adiA ← arginine decarboxylase
RA 4,352,460 T→G 100% intergenic (+103/‑124) yjdJ → / → ghoS GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA
RA 4,358,482 T→A 18.5% I46F (ATC→TTC)  cadA ← lysine decarboxylase, acid‑inducible
RA 4,360,814 T→G 100% Y374S (TAC→TCC)  cadC ← cadBA operon transcriptional activator
JC 4,370,611 Δ5 bp 100% intergenic (‑199/‑73) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
RA 4,478,879 T→C 100% V136A (GTT→GCT)  rraB → protein inhibitor of RNase E
RA 4,490,055 T→G 100% E3D (GAA→GAC yjgR ← DUF853 family protein with NTPase fold
RA 4,500,814 Δ1 bp 100% intergenic (‑23/‑446) yjgX ← / → yjgZ pseudogene fragment/uncharacterized protein
RA 4,503,627 A→G 31.5% intergenic (‑196/‑431) insG ← / → yjhB IS4 transposase/putative MFS transporter, membrane protein
RA 4,520,500 Δ1 bp 16.8% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 16.9% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,547,319 C→A 100% R742S (CGT→AGT)  fimD → fimbrial usher outer membrane porin protein; FimCD chaperone‑usher
RA 4,615,859 T→G 100% T403P (ACC→CCC)  yjjI ← DUF3029 family protein, putative glycine radical enzyme
RA 4,627,837 A→T 38.1% I175F (ATC→TTC)  nadR → trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
RA 4,631,700 T→C 100% L323P (CTT→CCT)  slt → lytic murein transglycosylase, soluble

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423708–3424234 3424593–3424238 5–886 61 [60] [58] 61 [rrfD]–[rrlD] [rrfD], [rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16653NA (NA)15 (0.150) 9/164 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 19879 =NA (NA)9 (0.090) 5/172 NT NA noncoding (685/768 nt) IS1 repeat region
?NC_000913 19905 = NA (NA)noncoding (659/768 nt) IS1 repeat region
* ? NC_000913 50327 =NA (NA)7 (0.070) 3/164 NT NA noncoding (1/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 50360 = NA (NA)noncoding (34/37 nt) REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 14968784 (0.780)15 (0.160) 11/152 NT 16.2% intergenic (‑86/+28) panB/yadC 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein
?NC_000913 = 149698 84 (0.910)intergenic (‑97/+17) panB/yadC 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein
* ? NC_000913 = 224286NA (NA)5 (0.050) 4/166 NT NA noncoding (516/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224304 NA (NA)noncoding (534/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 224572 =NA (NA)5 (0.050) 5/170 NT NA noncoding (802/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224598 = NA (NA)noncoding (828/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225078 =NA (NA)37 (0.370) 11/164 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225154 =NA (NA)31 (0.300) 14/168 NT NA noncoding (1384/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225176 = NA (NA)noncoding (1406/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225889 =NA (NA)38 (0.380) 15/164 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 225998NA (NA)32 (0.310) 11/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226704 =NA (NA)22 (0.210) 5/170 NT NA noncoding (946/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226730 = NA (NA)noncoding (972/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 227242 =NA (NA)23 (0.230) 5/166 NT NA noncoding (1484/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 227264 = NA (NA)noncoding (1506/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)29 (0.280) 14/168 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228016 =NA (NA)38 (0.380) 8/164 NT NA noncoding (2258/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228041 = NA (NA)noncoding (2283/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228022NA (NA)32 (0.320) 8/164 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228219 =NA (NA)9 (0.090) 5/166 NT NA noncoding (2461/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228248 = NA (NA)noncoding (2490/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228224NA (NA)22 (0.220) 10/166 NT NA noncoding (2466/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228241 NA (NA)noncoding (2483/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 247464 =NA (NA)7 (0.070) 4/168 NT NA noncoding (7/84 nt) REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 247490 = NA (NA)noncoding (33/84 nt) REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2579070 (0.000)120 (1.220) 74/162 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
* ? NC_000913 = 258586NA (NA)28 (0.270) 7/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region
* ? NC_000913 274347 =NA (NA)30 (0.300) 9/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274384 =NA (NA)28 (0.270) 8/172 NT NA noncoding (766/1195 nt) IS5 repeat region
?NC_000913 274422 = NA (NA)noncoding (728/1195 nt) IS5 repeat region
* ? NC_000913 = 274531NA (NA)7 (0.070) 5/164 NT NA noncoding (619/1195 nt) IS5 repeat region
?NC_000913 = 274551 NA (NA)noncoding (599/1195 nt) IS5 repeat region
* ? NC_000913 = 274695NA (NA)17 (0.160) 9/170 NT NA noncoding (455/1195 nt) IS5 repeat region
?NC_000913 = 274727 NA (NA)noncoding (423/1195 nt) IS5 repeat region
* ? NC_000913 274965 =NA (NA)36 (0.340) 14/172 NT NA noncoding (185/1195 nt) IS5 repeat region
?NC_000913 274991 = NA (NA)noncoding (159/1195 nt) IS5 repeat region
* ? NC_000913 275005 =NA (NA)31 (0.300) 10/172 NT NA noncoding (145/1195 nt) IS5 repeat region
?NC_000913 275029 = NA (NA)noncoding (121/1195 nt) IS5 repeat region
* ? NC_000913 = 275007NA (NA)59 (0.560) 12/172 NT NA noncoding (143/1195 nt) IS5 repeat region
?NC_000913 = 275025 NA (NA)noncoding (125/1195 nt) IS5 repeat region
* ? NC_000913 = 277706NA (NA)9 (0.090) 7/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 31526571 (0.660)11 (0.110) 6/166 NT 20.5% noncoding (37/1255 nt) IS3 repeat region
?NC_000913 = 566835 19 (0.190)noncoding (59/1258 nt) IS3 repeat region
* ? NC_000913 315563 =NA (NA)18 (0.190) 11/158 NT NA noncoding (335/1255 nt) IS3 repeat region
?NC_000913 315599 = NA (NA)noncoding (371/1255 nt) IS3 repeat region
* ? NC_000913 = 315572NA (NA)18 (0.190) 8/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 315642 =NA (NA)22 (0.220) 9/168 NT NA noncoding (414/1255 nt) IS3 repeat region
?NC_000913 315671 = NA (NA)noncoding (443/1255 nt) IS3 repeat region
* ? NC_000913 = 315646NA (NA)14 (0.140) 8/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region
* ? NC_000913 315892 =NA (NA)13 (0.120) 7/172 NT NA noncoding (664/1255 nt) IS3 repeat region
?NC_000913 315923 = NA (NA)noncoding (695/1255 nt) IS3 repeat region
* ? NC_000913 = 315938NA (NA)8 (0.080) 4/166 NT NA noncoding (710/1255 nt) IS3 repeat region
?NC_000913 = 315949 NA (NA)noncoding (721/1255 nt) IS3 repeat region
* ? NC_000913 = 316106NA (NA)4 (0.040) 4/168 NT NA noncoding (878/1255 nt) IS3 repeat region
?NC_000913 = 316141 NA (NA)noncoding (913/1255 nt) IS3 repeat region
* ? NC_000913 = 316201NA (NA)18 (0.190) 9/160 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 343971 =91 (0.840)16 (0.170) 11/158 NT 17.1% intergenic (+38/‑205) yahK/yahL broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein
?NC_000913 344009 = 74 (0.770)intergenic (+76/‑167) yahK/yahL broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein
* ? NC_000913 = 349938NA (NA)14 (0.140) 5/164 NT NA noncoding (334/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349969 NA (NA)noncoding (365/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 354733NA (NA)14 (0.140) 10/164 NT NA noncoding (135/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354765 NA (NA)noncoding (167/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 381292 =NA (NA)23 (0.240) 21/160 NT NA noncoding (33/1331 nt) IS2 repeat region
?NC_000913 381312 = NA (NA)noncoding (53/1331 nt) IS2 repeat region
* ? NC_000913 381663 =NA (NA)24 (0.240) 9/164 NT NA noncoding (404/1331 nt) IS2 repeat region
?NC_000913 381703 = NA (NA)noncoding (444/1331 nt) IS2 repeat region
* ? NC_000913 = 381669NA (NA)25 (0.250) 12/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)35 (0.350) 8/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 382110 =NA (NA)23 (0.230) 8/168 NT NA noncoding (851/1331 nt) IS2 repeat region
?NC_000913 382141 = NA (NA)noncoding (882/1331 nt) IS2 repeat region
* ? NC_000913 = 382242NA (NA)15 (0.150) 8/166 NT NA noncoding (983/1331 nt) IS2 repeat region
?NC_000913 = 382260 NA (NA)noncoding (1001/1331 nt) IS2 repeat region
* ? NC_000913 382282 =NA (NA)22 (0.220) 13/166 NT NA noncoding (1023/1331 nt) IS2 repeat region
?NC_000913 382313 = NA (NA)noncoding (1054/1331 nt) IS2 repeat region
* ? NC_000913 = 382287NA (NA)6 (0.060) 4/166 NT NA noncoding (1028/1331 nt) IS2 repeat region
?NC_000913 = 382306 NA (NA)noncoding (1047/1331 nt) IS2 repeat region
* ? NC_000913 = 409055NA (NA)13 (0.130) 7/164 NT NA noncoding (4/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 409088 NA (NA)noncoding (37/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 409056 =NA (NA)8 (0.080) 5/164 NT NA noncoding (5/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 409089 = NA (NA)intergenic (+139/+19) ykiA/rdgC pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function
* ? NC_000913 474269 =NA (NA)14 (0.140) 9/166 NT NA intergenic (+17/+32) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
?NC_000913 474296 = NA (NA)intergenic (+44/+5) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
* ? NC_000913 = 705938NA (NA)11 (0.110) 7/166 NT NA intergenic (+48/‑155) nagE/glnS N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
?NC_000913 = 705965 NA (NA)intergenic (+75/‑128) nagE/glnS N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
* ? NC_000913 729837 =NA (NA)12 (0.110) 6/172 NT NA coding (255/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 729868 = NA (NA)coding (286/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 730045NA (NA)17 (0.170) 10/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 805804 =NA (NA)13 (0.130) 6/164 NT NA noncoding (1/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 805836 = NA (NA)noncoding (33/178 nt) REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 819757NA (NA)6 (0.060) 5/166 NT NA intergenic (+10/‑127) moaE/ybhL molybdopterin synthase, large subunit/putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein
?NC_000913 = 819784 NA (NA)noncoding (27/27 nt) REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 937227NA (NA)6 (0.060) 4/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 937259 NA (NA)noncoding (36/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 126969472 (0.670)11 (0.110) 5/166 NT 16.3% intergenic (‑419/+9) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small
?NC_000913 = 1270193 46 (0.460)intergenic (‑383/+45) ldrB/ldrC toxic polypeptide, small/toxic polypeptide, small
* ? NC_000913 = 12994980 (0.000)103 (1.000) 72/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1432761NA (NA)9 (0.090) 6/170 NT NA coding (351/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432785 NA (NA)coding (375/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
* ? NC_000913 = 144517987 (0.800)15 (0.150) 6/160 NT 15.5% coding (2129/2640 nt) ydbH putative membrane‑anchored protein, function unknown
?NC_000913 = 1445190 85 (0.880)coding (2140/2640 nt) ydbH putative membrane‑anchored protein, function unknown
* ? NC_000913 = 1468681NA (NA)66 (1.220)
+44 bp
15/90 NT NA noncoding (560/1331 nt) IS2 repeat region
?NC_000913 1650843 = NA (NA)noncoding (1/706 nt) IS2 repeat region
* ? NC_000913 = 1508794NA (NA)8 (0.080) 5/166 NT NA noncoding (4/33 nt) REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1508823 NA (NA)noncoding (33/33 nt) REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1557071 =NA (NA)6 (0.060) 5/170 NT NA noncoding (9/19 nt) REP122 (repetitive extragenic palindromic) element; contains 1 REP sequences REP122 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1557101 = NA (NA)intergenic (+45/+11) osmC/ddpF lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin/D,D‑dipeptide ABC transporter ATPase
* ? NC_000913 1886815 =93 (0.860)15 (0.160) 8/156 NT 16.4% intergenic (+5/+49) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
?NC_000913 1886858 = 71 (0.750)intergenic (+48/+6) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
* ? NC_000913 1929923 =NA (NA)8 (0.080) 6/172 NT NA noncoding (1/84 nt) REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1929955 = NA (NA)noncoding (33/84 nt) REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 20668320 (0.000)22 (0.230) 8/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 2133462 =NA (NA)4 (0.040) 3/164 NT NA noncoding (31/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3639209 = NA (NA)noncoding (1/98 nt) RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 2219625 =NA (NA)6 (0.060) 5/164 NT NA noncoding (1/34 nt) REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2219655 = NA (NA)noncoding (31/34 nt) REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 230465337 (0.340)30 (0.300) 9/164 NT 63.8% noncoding (237/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2304669 0 (0.000)noncoding (253/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2304654 =NA (NA)8 (0.080) 4/164 NT 100% noncoding (238/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304670 = 0 (0.000)noncoding (254/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2306932 =104 (0.960)17 (0.170) 7/164 NT 15.7% intergenic (‑178/+40) mqo/yojI malate dehydrogenase, FAD/NAD(P)‑binding domain/microcin J25 efflux ABC transporter permease/ATPase
?NC_000913 2306961 = 87 (0.870)intergenic (‑207/+11) mqo/yojI malate dehydrogenase, FAD/NAD(P)‑binding domain/microcin J25 efflux ABC transporter permease/ATPase
* ? NC_000913 = 240562581 (0.750)14 (0.140) 8/164 NT 15.8% intergenic (‑553/+78) nuoA/lrhA NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes
?NC_000913 = 2405660 75 (0.750)intergenic (‑588/+43) nuoA/lrhA NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes
* ? NC_000913 2568139 =NA (NA)7 (0.070) 4/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2568169 = NA (NA)noncoding (31/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 2568139 =NA (NA)10 (0.100) 6/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 2617939 =NA (NA)7 (0.070) 5/164 NT NA intergenic (+2/+136) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
?NC_000913 2617967 = NA (NA)intergenic (+30/+108) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
* ? NC_000913 = 265175584 (0.780)15 (0.150) 11/162 NT 15.5% coding (533/4962 nt) yfhM bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
?NC_000913 = 2651772 87 (0.890)coding (516/4962 nt) yfhM bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
* ? NC_000913 = 266242960 (0.550)11 (0.100) 6/174 NT 15.8% noncoding (121/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662581 NA (NA)intergenic (‑450/+2) iscR/trmJ isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
* ? NC_000913 = 2662541NA (NA)14 (0.140) 7/164 NT NA noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662574 NA (NA)noncoding (266/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 2727847 =NA (NA)15 (0.150) 6/170 NT NA noncoding (1338/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727872 = NA (NA)noncoding (1313/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2727891 =NA (NA)46 (0.460) 11/166 NT NA noncoding (1294/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727910 = NA (NA)noncoding (1275/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)40 (0.390) 12/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2798052 =NA (NA)11 (0.100) 7/174 NT NA intergenic (+8/+39) ygaP/stpA DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
?NC_000913 2798084 = NA (NA)intergenic (+40/+7) ygaP/stpA DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
* ? NC_000913 2808135 =NA (NA)11 (0.110) 8/164 NT NA noncoding (5/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2808165 = NA (NA)noncoding (35/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2837464NA (NA)11 (0.110) 7/162 NT NA intergenic (‑39/+114) hypF/hydN carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
?NC_000913 = 2837491 NA (NA)noncoding (27/27 nt) REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3203112 =NA (NA)16 (0.160) 11/164 NT NA coding (1222/1239 nt) cca fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
?NC_000913 3203140 = NA (NA)intergenic (+11/+170) cca/bacA fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
* ? NC_000913 3296997 =NA (NA)10 (0.100) 8/168 NT NA intergenic (+13/+101) yraP/yraQ outer membrane lipoprotein/putative inner membrane permease
?NC_000913 3297033 = NA (NA)noncoding (35/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3299608108 (1.000)20 (0.210) 7/158 NT 17.2% coding (308/444 nt) yhbP UPF0306 family protein
?NC_000913 = 3299630 97 (1.010)coding (286/444 nt) yhbP UPF0306 family protein
* ? NC_000913 = 3392342NA (NA)13 (0.130)
+CTACAAACG
6/160 NT NA noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?NC_000913 = 3392393 NA (NA)intergenic (‑365/+65) tldD/yhdP putative peptidase/DUF3971‑AsmA2 domains protein
* ? NC_000913 3470277 =NA (NA)11 (0.110) 7/164 NT NA coding (1053/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470311 = NA (NA)coding (1019/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 3470738 =NA (NA)9 (0.090) 5/168 NT NA coding (592/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470767 = NA (NA)coding (563/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 = 347108250 (0.460)16 (0.160) 10/168 NT 30.4% coding (248/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 = 3471110 26 (0.250)coding (220/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 3619655 =NA (NA)10 (0.100) 7/168 NT 100% coding (464/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619677 = 0 (0.000)coding (486/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620227 =NA (NA)10 (0.100) 7/166 NT 100% coding (1036/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620250 = 0 (0.000)coding (1059/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620569 =NA (NA)19 (0.190) 8/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3650712 =NA (NA)8 (0.080) 5/164 NT NA noncoding (1/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3650744 = NA (NA)noncoding (33/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 3674441NA (NA)12 (0.120) 9/164 NT NA noncoding (61/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3674473 NA (NA)noncoding (93/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3754860 =NA (NA)5 (0.050) 5/164 NT NA noncoding (1/82 nt) REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3754890 = NA (NA)noncoding (31/82 nt) REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3898629 =NA (NA)8 (0.080) 4/162 NT NA intergenic (+20/+42) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
?NC_000913 3898659 = NA (NA)intergenic (+50/+12) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
* ? NC_000913 4040482 =NA (NA)48 (0.480) 14/166 NT NA intergenic (+59/‑35) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 = 408686596 (0.890)20 (0.210) 9/154 NT 17.9% intergenic (+16/‑137) fdhD/yiiG formate dehydrogenase formation protein/DUF3829 family lipoprotein
?NC_000913 = 4086880 100 (1.070)intergenic (+31/‑122) fdhD/yiiG formate dehydrogenase formation protein/DUF3829 family lipoprotein
* ? NC_000913 4103511 =NA (NA)6 (0.060) 5/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 417160734 (0.310)60 (0.600) 12/166 NT 65.4% intergenic (+63/‑30) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
?NC_000913 = 4213022 NA (NA)intergenic (+76/‑18) rrlE/rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
* ? NC_000913 = 41766319 (0.080)3 (0.030) 3/168 NT 26.1% coding (688/1185 nt) tufB translation elongation factor EF‑Tu 2
?NC_000913 = 4176644 NA (NA)coding (701/1185 nt) tufB translation elongation factor EF‑Tu 2
* ? NC_000913 4200145 =96 (0.890)14 (0.150) 10/156 NT 15.3% intergenic (+51/‑136) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
?NC_000913 4200182 = 71 (0.750)intergenic (+88/‑99) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
* ? NC_000913 4209894 =NA (NA)6 (0.060) 4/156 NT 100% intergenic (+45/‑149) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon
?NC_000913 4209912 = 0 (0.000)intergenic (+63/‑131) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon
* ? NC_000913 4235376 =NA (NA)9 (0.100) 6/156 NT NA coding (1619/1650 nt) pgi glucosephosphate isomerase
?NC_000913 4235411 = NA (NA)intergenic (+4/‑495) pgi/yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
* ? NC_000913 = 4254000NA (NA)7 (0.070) 6/164 NT NA noncoding (100/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 4254030 NA (NA)noncoding (130/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 = 429609397 (0.900)17 (0.170) 7/164 NT 16.0% noncoding (259/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4296173 NA (NA)noncoding (339/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 = 429614421 (0.190)6 (0.060) 4/164 NT 23.7% noncoding (310/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4296160 NA (NA)noncoding (326/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4344813 =NA (NA)6 (0.060) 4/160 NT NA intergenic (+23/+116) melB/yjdF melibiose:sodium symporter/DUF2238 family inner membrane protein
?NC_000913 4344842 = NA (NA)noncoding (28/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4344880NA (NA)4 (0.040) 4/166 NT NA noncoding (66/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 4344908 NA (NA)noncoding (94/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 4457231NA (NA)11 (0.110) 7/164 NT NA noncoding (47/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4457264 NA (NA)noncoding (80/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4460417 =NA (NA)11 (0.110) 9/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4486252 =81 (0.750)17 (0.170) 10/162 NT 17.7% coding (35/1101 nt) lptF lipopolysaccharide export ABC permease
?NC_000913 4486291 = 84 (0.850)coding (74/1101 nt) lptF lipopolysaccharide export ABC permease