Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I0 R1
|
246 |
122.0 |
6097616 |
93.1% |
5676880 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
23.1% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 23.1%
| 286.8
/ 75.7
| 148 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (61/47); new base T (30/2); total (98/50) |
| Fisher's exact test for biased strand distribution p-value = 4.28e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.96e-01 |
Only 100 of 151 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 2:45238/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTTCAAATTCAATACATTGCA‑GAAtt‑‑tt > 2:117613/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATCACGGATGCAGCGTTAACTCCTTATCCGGCCTACAAAATCGTGCAAATTCATTACATTGCA‑GAAtt‑‑tt < 2:85273/100‑1 (MQ=17)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑g > 1:2857584/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑g > 1:1702126/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑g < 2:2293156/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑Gt > 1:701618/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCATATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTa < 1:1843893/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTa < 2:371916/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAgg < 1:1201207/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAgg < 2:546365/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGTTTTATCCTGTTTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGcc < 1:983872/100‑1 (MQ=18)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTATGCCt > 2:1931382/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGAt < 2:2811126/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGc > 1:2827266/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCgg < 1:330353/100‑1 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATCAGCGGa > 2:1217667/1‑100 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAg > 1:587145/1‑100 (MQ=255)
cgcTTTGTTGATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 2:2570162/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:3040692/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:405163/99‑1 (MQ=255)
tttgtaggCCGGATAAGTCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTACA‑GAGAT‑‑TGC‑‑GTAGGCCTGATAAGCGTAg > 2:1462092/8‑95 (MQ=11)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAACATATTGCA‑ATTCT‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2836239/8‑100 (MQ=18)
tGTTTCTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAAT‑‑TTC‑‑GTACGCCTGATAAGCGGAgcgc > 2:1938451/1‑98 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAATGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1671444/1‑100 (MQ=255)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATc > 2:2399942/7‑100 (MQ=18)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAACATATTGCA‑ATTCT‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1798739/6‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAGC‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:3020255/5‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑CCT‑‑GTAGGCCGGATAAGCGTAGCGCATCAGGCa > 2:2050239/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:85464/2‑100 (MQ=14)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:509184/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1106044/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GAGAC‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:401355/2‑100 (MQ=17)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1233024/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:370551/1‑100 (MQ=255)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACACAAACATGCAAATTCAATAGATTGCA‑GAGAT‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:25540/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCA‑‑ATAT‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:494082/1‑97 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2262768/1‑99 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCA‑‑ATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:449408/9‑99 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGCA‑TGAGC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:146806/9‑98 (MQ=17)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:2028258/1‑100 (MQ=255)
ccGGATCCGGCGTTAACGCCTTATCCAGCCTACAAAATTGTGCAAAATCAATTGATTGCA‑CAGCT‑‑AGC‑‑GTAGGCCTGATGCGCTACGCTCATCAGGc < 2:1483766/97‑1 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:1357700/8‑97 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1008095/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCGTCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GGTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:2580452/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGCA‑TGAGC‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1559778/7‑100 (MQ=14)
ggataaggcgTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGCA‑TGAGC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:131475/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:756655/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1708710/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAGC‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:3034549/7‑99 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACT‑‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 2:1239319/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAGT‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:1066030/7‑98 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACG‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:2269240/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCATAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAGA‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGACAttta > 1:2756742/7‑98 (MQ=18)
gataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:2192871/6‑100 (MQ=17)
aTGGGGCGTTATCGCTTTATAGGGCGAAAAAAATCGTGGAAATTCACTACATTGCA‑GAATT‑‑TTC‑‑GGAGGGCTAATAAGTGGAGCGCATCAGGCATTtttg < 2:1974961/100‑1 (MQ=16)
aTGCGGGGTTAACTCCTTATCCGGCATACAAAATGGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTTATAAGCGGAGTGCATCAGGGATTtttg < 2:1270139/100‑1 (MQ=18)
gcggcgTTAACGCCTTATCCAGCCTACAAAATAGTACAAAATCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGAGCATCAGGCATTtttgcc > 2:704377/1‑100 (MQ=18)
cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2913962/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2748791/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 1:1614734/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCATGATAAGCGGAGCGCATCAGGCATTtttgcctt > 1:6083/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:636789/1‑100 (MQ=255)
ttAACGCCTTATCCGGCCTACAAAATCGTGTAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2555109/98‑1 (MQ=255)
ttAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:475307/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc > 2:1710077/1‑99 (MQ=255)
tAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 2:1381428/100‑1 (MQ=255)
aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:2196911/1‑100 (MQ=255)
aCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:2420009/100‑1 (MQ=255)
cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCTATCa > 1:2333888/1‑100 (MQ=255)
gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GATTT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:773849/100‑1 (MQ=255)
gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:1116001/100‑1 (MQ=255)
ccTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTCCTTTGCCATCatt > 2:3045457/1‑98 (MQ=255)
ccTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:1744233/1‑100 (MQ=255)
cGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:464485/1‑100 (MQ=255)
gCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑TTAGGCCTGATAAGCGTAGCGCATCATGCATTTTTGCCTTTGCCATCAGTCtt < 2:2656694/94‑1 (MQ=255)
gCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:1982441/1‑98 (MQ=255)
ccTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 2:1831134/100‑1 (MQ=255)
tctcAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt < 2:2102119/97‑1 (MQ=255)
cAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtaga > 1:2102142/1‑97 (MQ=255)
aaTCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:496477/100‑1 (MQ=255)
aTCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatt > 2:919909/1‑100 (MQ=255)
tCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatta < 2:796912/100‑1 (MQ=255)
tCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatta < 2:388500/100‑1 (MQ=255)
cGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat > 1:1187900/1‑100 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 2:2680400/1‑100 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 1:1933076/1‑100 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 2:2082608/1‑100 (MQ=255)
tGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCTCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:997315/100‑1 (MQ=255)
tGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGTCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc > 1:2595544/1‑100 (MQ=255)
tGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:1549065/100‑1 (MQ=255)
tGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 2:2148835/100‑1 (MQ=255)
gCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg > 2:2894226/1‑100 (MQ=255)
gCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:1476580/100‑1 (MQ=255)
gCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg > 2:1334593/1‑100 (MQ=255)
gCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg > 2:2394884/1‑100 (MQ=255)
aaaTTCAATACATTGCA‑GAAGT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAGCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 2:2741684/100‑1 (MQ=255)
tCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATagag > 1:962990/1‑100 (MQ=255)
aTACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACg > 2:1666298/1‑100 (MQ=255)
cATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGttt > 1:68886/1‑100 (MQ=255)
|
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
