Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
24.3% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 24.3%
| 554.6
/ 161.6
| 289 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (94/108); new base T (63/2); total (179/110) |
| Fisher's exact test for biased strand distribution p-value = 4.61e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 |
Only 100 of 292 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACAt > 1:224486/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACAtt < 2:2602896/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTg < 2:2369967/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGc > 2:3288547/1‑100 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAACGTGCAAA‑TTCAATACATTGCA‑GA‑At < 1:3861547/100‑1 (MQ=255)
caatcAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC‑AAAGTCGTATAAACTGCAATACATTgaattta < 1:2977455/96‑7 (MQ=17)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑At‑ttt > 1:1164220/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑g < 2:2109352/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTa < 2:1379094/100‑1 (MQ=255)
atcttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAgg < 1:1686241/97‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGcc > 1:727115/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAggagat > 2:1686246/1‑96 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTg < 1:2007268/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGa < 1:3536186/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATa < 1:1218830/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATaa > 1:3012156/1‑98 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGTGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg < 2:1842329/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg > 2:2175300/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg > 1:2823462/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1911322/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:4162666/1‑100 (MQ=255)
cTTTGTTTCTGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GC‑AT‑TTTC‑‑GTAGGCCTGATAAGTGGAgc < 1:2049830/99‑1 (MQ=17)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:289564/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:1782461/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa > 2:3497768/1‑100 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAACATATTGCA‑AT‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:27686/8‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:2553322/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAA‑TTCAATATATTGCA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2419993/6‑100 (MQ=18)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAA‑TTCAATAGATTGCA‑GA‑GA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:639892/6‑100 (MQ=17)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:1605099/1‑100 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAATTC‑TGCAAA‑TTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:679164/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAA‑TTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:251099/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAA‑TCCAAAATATTGCA‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3457958/4‑100 (MQ=21)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAGTCGTGCAAA‑TTCACTACATTGAG‑GA‑AT‑TTAC‑‑GTAGGCCTGATAAGGGGAGCGCATCAgg > 1:861178/1‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAACATATTGC‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2839328/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAA‑CTCAATATATTGCA‑GAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1582414/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAA‑TTCAATATATTGCA‑GG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 1:2434933/3‑100 (MQ=18)
aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3035489/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1432903/100‑1 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1910432/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAA‑TTCAATATATTGCA‑GA‑AA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1547835/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAA‑TTCAATATATTGCA‑GA‑AA‑CCTT‑‑CTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2564641/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAACATATTGC‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:598624/2‑99 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAA‑TTCAATATATTGTG‑GG‑CT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1959008/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAA‑TTCAATATATTGCA‑GG‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCa > 2:2077125/2‑100 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:4083402/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:3743114/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCTTATCCGGCCTAC‑AAAATCGTGCTAA‑TTCAATATATTGCA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:4055131/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAA‑TTCAATATATTGCA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2704278/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAA‑TTCAATGTATTGCA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:3164096/1‑99 (MQ=25)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAA‑TTCAATATATTGCA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1786424/8‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAA‑TTCAACAAATTGC‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2957040/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAA‑TTCAATATATTGCA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3491711/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAA‑TTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1501097/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAA‑TTCAATATATTGCA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2472738/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAA‑TTCAATGTATTGCA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1280973/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAA‑TTCAATATATTGCA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:3155307/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAA‑TTCAATATATTGCA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 2:1327207/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAA‑TTCAATAGATTGCA‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:101432/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAA‑TCCAAAATATTGCA‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:1149377/7‑98 (MQ=25)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAA‑TTCAATAAATTGAT‑CG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1486924/6‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAA‑TTCAATATATTGCAGGG‑AC‑TAT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctta > 2:3466834/6‑95 (MQ=21)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2629454/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 1:1841852/1‑100 (MQ=255)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAA‑TTCAATATATTGCA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:4078602/4‑100 (MQ=17)
taaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAA‑TTCAATATATTGCA‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAAGCAGTtttgc > 2:1971434/4‑100 (MQ=17)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:3906001/100‑1 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACACTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:3745252/100‑1 (MQ=255)
gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 2:335722/1‑100 (MQ=255)
cgTTCACGCCTTATCCGGCCTAC‑AAAATCATGCAAA‑CTCAATACATTGCC‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAACGCATCAGGCATTtttgcct > 1:228780/1‑97 (MQ=17)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTttttccttt > 2:429108/1‑99 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2889977/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1347015/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATGGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:2116188/100‑1 (MQ=255)
accGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2888554/3‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 1:3835576/1‑100 (MQ=255)
cTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:1605103/100‑1 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa > 1:3990390/1‑100 (MQ=255)
acGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGACCTGCTAAGCGAAACGCATCAGGCATTTTTGCCTTTGCTATCAGTCTTGt > 1:3940670/2‑99 (MQ=21)
cGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt < 2:2564645/100‑1 (MQ=255)
ggCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGACCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg > 1:3059117/1‑100 (MQ=255)
gacTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 1:3591753/97‑1 (MQ=255)
gCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTTTTTTTTTTTCAGTCTTGTATgg > 1:692630/1‑100 (MQ=18)
gCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg > 2:3700401/1‑100 (MQ=255)
ccTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 2:3862681/100‑1 (MQ=255)
ccTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 1:335720/100‑1 (MQ=255)
ccTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 2:2811919/100‑1 (MQ=255)
aC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt > 2:532106/1‑100 (MQ=255)
aC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 2:908367/100‑1 (MQ=255)
c‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCGGGCATTTTTGCCTTTGCCATCAGTATTGTATGGCtttt < 1:2630123/100‑1 (MQ=255)
tCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatta < 1:1669262/100‑1 (MQ=255)
tGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc > 2:1997054/1‑100 (MQ=255)
gCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 2:790905/100‑1 (MQ=255)
aaa‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCTGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:2739882/97‑1 (MQ=255)
cAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga > 2:1524824/1‑100 (MQ=255)
aaTACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga > 1:415643/1‑99 (MQ=255)
aaTACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCCATagag < 1:3725661/98‑1 (MQ=255)
aTACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAtttcgatc > 2:3787735/1‑93 (MQ=255)
cATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGttt < 2:3247635/100‑1 (MQ=255)
cATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGttt < 2:755463/100‑1 (MQ=255)
|
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAA‑TTCAATACATTGCA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
