Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,978 |
A→C |
22.6% |
intergenic (‑188/+120) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,978 | 0 | A | C | 22.6%
| 676.1
/ 187.5
| 314 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (107/120); new base C (59/2); total (192/122) |
| Fisher's exact test for biased strand distribution p-value = 2.90e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.80e-02 |
Only 100 of 320 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCA > NC_000913/3705879‑3706076
|
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 1:2796947/1‑100 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 2:3772715/1‑100 (MQ=255)
aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:3458102/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGAGGCGTTAACGCCTTa > 2:4205702/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2252936/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:1922185/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:815914/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:2086148/1‑100 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 2:2285025/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:3968923/100‑2 (MQ=37)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGGTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3149483/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:557144/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:646497/100‑3 (MQ=37)
cgttGCACGCAGAGGTACAGCGCCCCCGGGTATATAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 1:3858042/96‑1 (MQ=21)
cgcTGTTCGCAGAGGCACAGCGCTACCGGGTATACAGATTGGTGACAAAGTGCGCTTTGTTTATTCCGGATAAGGCGTTATCGCCGCATCCGGCATaaac < 1:1002361/100‑4 (MQ=21)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:1268005/1‑100 (MQ=255)
tGCAGGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:2319343/100‑1 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 2:1124123/100‑1 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt > 2:1196977/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:1050710/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:401646/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:1867245/100‑1 (MQ=255)
ggagagGCACAGCACCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc > 2:2876369/3‑100 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1994244/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:2217753/1‑100 (MQ=255)
gacacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:3654339/3‑100 (MQ=255)
cacgGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1513226/1‑100 (MQ=255)
acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa < 1:2889123/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:505650/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:2854196/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:1687148/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 2:2369967/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:2502954/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 1:3031665/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 1:3330410/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCg < 2:2109352/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTa < 2:1379094/100‑1 (MQ=255)
atcttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAgg < 1:1686241/97‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGcc > 1:727115/1‑100 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCt > 1:1478996/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGa < 1:3536186/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGa > 2:2911931/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATa > 2:3252168/1‑100 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGTGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCg < 2:1842329/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCg > 2:2175300/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCgg > 1:2823462/1‑100 (MQ=255)
tGCGCGTTGTTTATGCCGGATTCGGAGTTATCGGCTTATCTGGCCTAC‑AAAATCGTGCAAACTCAAGACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCgg < 1:2624705/100‑1 (MQ=18)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgc < 1:1567754/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgc < 1:1911322/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgcg < 1:1531116/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgcg > 2:289564/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgcg < 1:2047092/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAgcg < 2:1782461/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCa > 2:3497768/1‑100 (MQ=255)
atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑AT‑CCCTTGTAGGCCTGATAAGCGTAGCGCAt > 1:3903465/9‑100 (MQ=18)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGCA‑AT‑TC‑T‑CTTGTAGGCCTGATAAGCGTAGCGCAt > 2:27686/8‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCAt > 1:1600225/1‑100 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCAt > 1:2553322/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 2:2683847/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑TATGTAGGCCTGATAAGCGTAGCGCATCa > 1:639892/6‑100 (MQ=17)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:679164/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:251099/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGAT‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:271092/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAGATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:2997110/1‑100 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCACCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2596725/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:384718/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑A‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:955708/3‑100 (MQ=18)
aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3035489/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1432903/100‑1 (MQ=255)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1191859/100‑1 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTTCTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2564641/2‑100 (MQ=17)
cgctggataaggcgTTCACGCAGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CA‑TT‑T‑AGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:364030/11‑100 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3434330/1‑99 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:3743114/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCTTATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:4055131/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2953754/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:3164096/1‑99 (MQ=25)
ccggataaggcgTTTACGCCGCATCCGGTCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑AT‑CT‑T‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCaag > 2:15831/9‑98 (MQ=18)
ccggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1889770/9‑100 (MQ=18)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1786424/8‑100 (MQ=17)
cggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:3410148/8‑97 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1127275/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3477226/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 2:1327207/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 1:3066090/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:494128/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1320148/7‑100 (MQ=17)
ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 1:1960470/100‑1 (MQ=255)
ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:3306813/1‑100 (MQ=255)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGGG‑AC‑T‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctta > 2:3466834/6‑95 (MQ=21)
gataacgcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCC‑GA‑AA‑C‑CCTGTAGGCCTCAACAGCGGCGCGGATCACGc > 1:2085452/7‑94 (MQ=9)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:4112468/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2629454/100‑1 (MQ=255)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:4078602/4‑100 (MQ=17)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAGGCGGAGCGCATCAGGCATTtttgc > 2:1977453/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2425261/1‑100 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACACTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:3745252/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:771379/1‑100 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:871169/99‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:4273223/1‑100 (MQ=255)
|
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCA > NC_000913/3705879‑3706076
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
