Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I0 R1
|
328 |
102.7 |
5123138 |
93.4% |
4785010 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,650,904 |
T→C |
100% |
pseudogene (60/693 nt) |
insD1 → |
IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,650,904 | 0 | T | C | 100.0%
| 104.6
/ ‑6.7
| 33 | pseudogene (60/693 nt) | insD1 | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (16/16); total (16/17) |
AGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTG > NC_000913/1650808‑1650941
|
aGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgcgt < 2:2124881/99‑1 (MQ=255)
gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGttt > 1:1093469/1‑100 (MQ=255)
gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGttt > 1:1084710/1‑100 (MQ=255)
aCATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCg < 1:347835/100‑1 (MQ=255)
cATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCgg > 2:1081295/1‑100 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt > 2:2339123/1‑100 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt < 1:2131709/100‑1 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt < 1:2131978/100‑1 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt < 2:1919504/100‑1 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt > 1:2292372/1‑100 (MQ=255)
tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGAt > 1:580073/1‑100 (MQ=255)
ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGTTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATc > 2:1372400/1‑100 (MQ=255)
ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATc > 1:2027008/1‑100 (MQ=255)
gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCa < 2:569744/100‑1 (MQ=255)
gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCa < 2:569591/100‑1 (MQ=255)
aaaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCACAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCAt < 2:547068/100‑1 (MQ=255)
aaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATg < 1:615087/100‑1 (MQ=255)
aaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATgc < 2:52700/100‑1 (MQ=255)
acacTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATgcg < 1:417371/100‑1 (MQ=255)
ggATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGa > 2:2080758/1‑100 (MQ=255)
ggATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGa > 1:136766/1‑100 (MQ=255)
ggATGACGAACTGGCCTATGAGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGa > 2:283595/1‑100 (MQ=255)
aTGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAAt > 1:2264703/1‑100 (MQ=255)
aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATgcg < 2:136764/100‑1 (MQ=255)
aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATgcg > 1:1287595/1‑100 (MQ=255)
cGAACTGGCCTATGGGCGCTGCTTCGCAGAGAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATgcgc < 2:238451/100‑1 (MQ=255)
cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATgcgc < 2:1940505/100‑1 (MQ=255)
gAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCt < 1:856428/100‑1 (MQ=255)
aaCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCTg > 2:1010731/1‑100 (MQ=255)
cTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCTGtt > 2:656450/1‑100 (MQ=25)
ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTg < 2:2478185/97‑1 (MQ=31)
cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTg < 1:713990/100‑1 (MQ=11)
cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTg > 1:1551656/1‑100 (MQ=11)
cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGCGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTg < 1:1288514/100‑1 (MQ=11)
|
AGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTG > NC_000913/1650808‑1650941
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
