Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I0 R1
|
328 |
102.7 |
5123138 |
93.4% |
4785010 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,880,549 |
T→C |
100% |
T71A (ACC→GCC) |
leuE ← |
leucine efflux protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,880,549 | 0 | T | C | 98.6%
| 230.1
/ ‑4.5
| 69 | T71A (ACC→GCC) | leuE | leucine efflux protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (26/41); total (26/43) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
TTTACCCTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATA > NC_000913/1880454‑1880643
|
tttACCCTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCtta < 2:976604/100‑1 (MQ=255)
tACCCTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaat < 1:343507/100‑1 (MQ=255)
tACCCTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaat < 2:675029/100‑1 (MQ=255)
ctcccTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaat < 2:686260/98‑1 (MQ=255)
cccTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaatag > 1:686267/1‑98 (MQ=255)
ccTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaattaa < 1:2438002/100‑1 (MQ=255)
ccTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCttaattaa > 1:1863647/1‑100 (MQ=255)
cTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTtaattaat < 2:266981/100‑1 (MQ=255)
cTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTtaattaat < 1:2006458/100‑1 (MQ=255)
gggTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGc < 2:778987/100‑1 (MQ=255)
gggTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGc > 1:390168/1‑100 (MQ=255)
gggTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGc < 2:2183474/100‑1 (MQ=255)
gTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCa > 1:666340/1‑100 (MQ=255)
cgcgTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACt < 2:531255/100‑1 (MQ=255)
gcgTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTc < 1:1695721/100‑1 (MQ=255)
gTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCa > 1:580474/1‑100 (MQ=255)
gTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCa < 2:2351917/100‑1 (MQ=255)
tAAAGAATTTTACT‑CCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGc < 2:2540027/100‑1 (MQ=255)
aaGAATTTTACTCCCCAGATAGAGCCAATAAAACGCACCAAGATAACTTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGcc < 2:2181886/100‑1 (MQ=255)
aGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGccc < 1:1015730/100‑1 (MQ=255)
aTTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATg < 1:155738/100‑1 (MQ=255)
ttttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATATCGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGc < 2:1716916/100‑1 (MQ=255)
ttttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGc < 1:2128073/100‑1 (MQ=255)
tttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGcc < 1:1353539/100‑1 (MQ=255)
tttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGcc < 1:1790759/100‑1 (MQ=255)
ttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCa > 2:1357456/1‑100 (MQ=255)
ttACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCa < 2:471304/100‑1 (MQ=255)
ccccAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTCATGTCGCCACTCCAGCCCATGCCAGAAAc > 2:2496851/1‑100 (MQ=255)
ccccAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAAc > 1:1400115/1‑100 (MQ=255)
ccAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGaa < 2:1075494/96‑1 (MQ=255)
cAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATc < 2:2476194/100‑1 (MQ=255)
cAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATc < 1:1616732/100‑1 (MQ=255)
aTAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCCCTCCAGCCCATGCCAGAAACATCAAt < 1:2247835/100‑1 (MQ=255)
tAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATa < 1:285945/100‑1 (MQ=255)
gagCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATAcc > 2:1440180/1‑100 (MQ=255)
gagCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATAcc > 2:43114/1‑100 (MQ=255)
gagCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCACCACCCCAGCCTATGCCAGAAACATCaa > 2:796195/1‑96 (MQ=255)
agCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCg > 1:460608/1‑100 (MQ=255)
cAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCa < 2:837919/100‑1 (MQ=255)
tAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGc < 2:2006802/100‑1 (MQ=255)
aaaaCGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGcc < 2:390164/100‑1 (MQ=255)
aaaCGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCa > 1:318373/1‑100 (MQ=255)
aaCGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCaa > 1:1848967/1‑100 (MQ=255)
cgcgCCAGGATACCGAAAAATGTTGAATAAGACCGGGCTCGACTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCaat < 2:2240056/99‑1 (MQ=255)
gCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCaataa < 1:2326074/100‑1 (MQ=255)
cACCAAGATAACGTACAATGTTGAATTATATCGGGGTGGCCTTAATTAATGTAGCCACTACAGCCCATGCCAGAAACATCAATAACGCATCGCCaataca > 2:1542475/1‑98 (MQ=255)
cACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCaataaa > 1:260532/1‑100 (MQ=255)
cACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCAGGCCAGAAACATCAATACCGCATCGCCaataaa > 1:2559639/1‑100 (MQ=255)
aCCAAGATAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCaataaat < 2:2401157/100‑1 (MQ=255)
tAACGTACAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGc < 2:1630099/100‑1 (MQ=255)
tACAATGTTGAATAATATCGGGGTGGCCATAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGcc > 1:314576/1‑100 (MQ=255)
aCAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCg < 2:2338995/100‑1 (MQ=255)
aCAATGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCg > 2:898599/1‑100 (MQ=255)
aTGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCaa < 1:1183162/100‑1 (MQ=255)
aTGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCaa > 2:1142264/1‑100 (MQ=255)
tGTTGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAg < 2:580467/100‑1 (MQ=255)
ttGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAGTACACCGCAGGCCGCAAGAt < 2:1569636/100‑1 (MQ=255)
tGAATAATATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATa < 2:1244413/100‑1 (MQ=255)
aataatATCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAAc > 1:1381532/1‑100 (MQ=255)
ataataTCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAAcc > 2:1858541/1‑100 (MQ=255)
ataataTCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAAcc < 1:2496779/100‑1 (MQ=255)
ataataTCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAAcc > 1:2268266/1‑100 (MQ=255)
aataTCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGc > 1:2507009/1‑100 (MQ=255)
tatCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCt < 1:668280/100‑1 (MQ=255)
tCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCttt < 1:41628/100‑1 (MQ=255)
tCGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCACATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCttt < 1:1430241/100‑1 (MQ=255)
cGGGGTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTc < 2:2442443/100‑1 (MQ=255)
ggggTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCa > 2:2363782/1‑100 (MQ=255)
gggTGGCCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCAt > 2:55199/1‑100 (MQ=255)
ggtggcCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATa < 2:1673157/100‑1 (MQ=255)
|
TTTACCCTTCAGGGTCGCGTAAAGAATTTTACTCCCCAGATAGAGCAAATAAAACGCACCAAGATAACGTACAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATA > NC_000913/1880454‑1880643
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
