Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F212 I0 R1	246	122.0	6097616	93.1%	5676880	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,881,128	C→A	100%	E228* (GAA→TAA)	dmlR ←	transcriptional activator of dmlA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,881,128	0	C	A	98.8%	311.7 / ‑3.8	95	E228* (GAA→TAA)	dmlR	transcriptional activator of dmlA
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (49/44); total (50/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTTT  >  NC_000913/1881031‑1881224

aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc                                                                                                <  2:1323800/100‑1 (MQ=255)

aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc                                                                                                <  1:226091/100‑1 (MQ=255)

aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc                                                                                                <  2:417700/100‑1 (MQ=255)

 cTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATcc                                                                                               <  2:959199/100‑1 (MQ=255)

 cTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATcc                                                                                               >  2:945649/1‑100 (MQ=255)

   tGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCag                                                                                             >  1:959205/1‑99 (MQ=255)

   tGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCAt                                                                                             <  1:1932259/100‑1 (MQ=255)

     cACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGa                                                                                           <  2:507683/100‑1 (MQ=255)

     cACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACAACACTGATGGACAATTTATCCATGa                                                                                           >  1:932846/1‑100 (MQ=255)

      aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAt                                                                                          >  1:512458/1‑100 (MQ=255)

       cTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAt                                                                                          <  1:370424/99‑1 (MQ=255)

       cTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCAAGACACCACTGATGGACAATTTATCCATGAtt                                                                                         >  1:826356/1‑100 (MQ=255)

        tAAATGACCACTGGCAATGTTTTCTCTGCCATCCCACGAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCTTTGATGGACAATTTATCCATGAt                                                                                          <  2:1763416/98‑1 (MQ=255)

        tAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTa                                                                                        >  1:1512818/1‑100 (MQ=255)

          aaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTa                                                                                        >  2:2956922/1‑98 (MQ=255)

          aaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAga                                                                                      <  1:1332224/100‑1 (MQ=255)

          aaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAga                                                                                      >  1:2154823/1‑100 (MQ=255)

           aTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgac                                                                                     <  1:148380/100‑1 (MQ=255)

           aTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgac                                                                                     <  1:945655/100‑1 (MQ=255)

            tGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCATGCACATAGAAACACAACTGATGGACAATTTATCCATGATTaaa                                                                                      >  1:766833/1‑96 (MQ=255)

               ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACAACTGATGGACAATTTATCCCTGATTAGACGACa                                                                                 >  2:2348012/1‑100 (MQ=255)

                  cTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTg                                                                              <  1:2796902/100‑1 (MQ=255)

                   tGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCACGCTTAGACGACAGTg                                                                              >  2:1673447/1‑99 (MQ=255)

                      cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc                                                                          <  2:49056/100‑1 (MQ=255)

                        aTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCgg                                                                        <  2:2561098/100‑1 (MQ=255)

                          gTTTTCGCTAACATCCTACTAGGAACGCAGAGCAATGCCTTGTCCATCGCGACACCACTGTTGTACACTTTCTTCATGCTTGGCCGTGAGTggtcttgc                                                                       >  2:2330112/1‑93 (MQ=255)

                           ttttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGa                                                                     >  1:1203559/1‑100 (MQ=255)

                            tttCGCTAACATCCCACCATGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGAc                                                                    <  2:888124/100‑1 (MQ=255)

                             ttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACt                                                                   >  1:1360868/1‑100 (MQ=255)

                             ttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACt                                                                   >  1:2717425/1‑100 (MQ=255)

                               cGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACttt                                                                 <  1:2263950/100‑1 (MQ=255)

                               cGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACttt                                                                 <  2:2976225/100‑1 (MQ=255)

                                gCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTa                                                                >  1:1036683/1‑100 (MQ=255)

                                  tAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTaa                                                               <  2:2860505/99‑1 (MQ=255)

                                   aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc                                                             <  2:78365/100‑1 (MQ=255)

                                   aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGAGACTTTAATc                                                             >  2:1520491/1‑100 (MQ=255)

                                   aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCAATGATTAGACGACAGTGAGCCGGTGACTTTAAt                                                              >  1:163235/1‑99 (MQ=255)

                                    aCATCCCACCAGGAACGCAGAGCAATCCCCTGCGCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCg                                                            <  2:2655667/100‑1 (MQ=255)

                                    aCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCg                                                            <  2:1431279/100‑1 (MQ=255)

                                    aCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATACATGATTAGACGACAGTGGGCCGGTGACTTTAATCg                                                            >  1:780393/1‑100 (MQ=255)

                                     cATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGc                                                           <  1:1021876/100‑1 (MQ=255)

                                      aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa                                                          >  2:1008353/1‑100 (MQ=255)

                                       tCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCAt                                                         >  1:1837866/1‑100 (MQ=255)

                                         ccaccaGGAACGCAGAGCAATCCCCTGCCCATCTAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATg                                                        >  1:1156262/1‑99 (MQ=255)

                                         ccaccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgg                                                       >  2:3039025/1‑100 (MQ=255)

                                         ccaccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATAGCATgg                                                       >  1:1156730/1‑100 (MQ=255)

                                          caccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTAGGCCGGTGACTTTAATCGCATggg                                                      >  1:2793058/1‑100 (MQ=255)

                                           accaGGAACGCAGAGCAATCCCCTCCCCATCGAGACACCACTGATGGACAAATTATCCATGATTAGACGACAGTGGTCCGGTGACTTTAAGCGCATaggg                                                     >  2:1181563/1‑100 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGATACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggggg                                                    <  1:2526275/100‑1 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACTCCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggg                                                      <  2:2293118/98‑1 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggggg                                                    <  2:1582392/100‑1 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggggg                                                    <  1:1008359/100‑1 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggggg                                                    <  2:2717393/100‑1 (MQ=255)

                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAAACACCACTGATGGCCAATTTATACATAAAAAAACGAAAGTGGGCCGGTGACTTTAATCGCATgggg                                                     >  1:307401/1‑99 (MQ=255)

                                             caGGAACGCAGAGCAATCCCCTGCCCATCGAGACACGACTGATGGACAATTTATCCGTGATTAGTTGTTAGTGGGTCGGTGGCTTTAATCGCATggggg                                                    >  2:2891764/1‑99 (MQ=255)

                                             caGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgggg                                                     >  2:1571581/1‑98 (MQ=255)

                                              aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc                                                  <  1:2346256/100‑1 (MQ=255)

                                               ggAACGCAGAGCAATCCCCTGCCCATCGAGACACCTCTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCct                                                 <  1:695592/100‑1 (MQ=255)

                                               ggAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCct                                                 <  2:255274/100‑1 (MQ=255)

                                               ggAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCct                                                 >  1:687496/1‑100 (MQ=255)

                                                  aCGCAGAGCAATCCCCTGCCCATCGAGACACCACTGAGGGACAATATATCCATGATTAGACGACAGTGGGCCGGTGAGTTTAATCGCATGAGGGCcatc                                               >  2:1173252/1‑99 (MQ=255)

                                                  aCGCAGAGCAAGCCCCGGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCctt                                                <  2:1745464/98‑1 (MQ=255)

                                                    gCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCttt                                            <  2:292411/100‑1 (MQ=255)

                                                     cAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTa                                           >  1:1890608/1‑100 (MQ=255)

                                                     cAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCACATGGGGGCCTTCTTTa                                           >  1:1594960/1‑100 (MQ=255)

                                                       gagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAtt                                         >  1:1239843/1‑100 (MQ=255)

                                                         gCAATCCCCTGCCCATCGAGACACCACTGATTGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg                                        <  1:742343/99‑1 (MQ=255)

                                                         gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGc                                       <  1:1529831/100‑1 (MQ=255)

                                                         gCAATCCCCTGCCCATCGAGACACCACTGATGGACAAGTTAGCCATGATTACACAACAGTGGGCCGGTGACTTTAATCGCATGGAGGCCTTCTTGATTGc                                       >  1:1648972/1‑100 (MQ=255)

                                                            aTCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTa                                    <  1:2946691/100‑1 (MQ=255)

                                                                cttccgatctgagaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGCCTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTg                                <  2:1619184/90‑1 (MQ=255)

                                                                  tGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACTACAGTGTGCCGGAGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGcc                              >  1:807649/1‑100 (MQ=255)

                                                                   gCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCa                             <  1:2438618/100‑1 (MQ=255)

                                                                    cccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAg                            <  2:1685962/100‑1 (MQ=255)

                                                                       aTCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGaca                         >  2:2368321/1‑100 (MQ=255)

                                                                       aTCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGaca                         <  2:1225948/100‑1 (MQ=255)

                                                                         cGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACAcc                       <  2:3037383/100‑1 (MQ=255)

                                                                          gagaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTgagatcggaag                      >  1:1619203/1‑90 (MQ=255)

                                                                             acacCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaaa                   <  1:2706582/100‑1 (MQ=255)

                                                                              caccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAg                  <  2:2713000/100‑1 (MQ=255)

                                                                                 cacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGAGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgat               >  1:2418442/1‑100 (MQ=255)

                                                                                     gATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatgat            >  1:2674498/1‑99 (MQ=255)

                                                                                     gATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATc           <  2:1203548/100‑1 (MQ=255)

                                                                                      ctGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg          <  2:1551721/99‑1 (MQ=255)

                                                                                      aTGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTCATTGCCAGACACCAAAAGGATGATcg          >  2:1339827/1‑100 (MQ=255)

                                                                                      aTGGACAATTTAGCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg          <  2:164349/100‑1 (MQ=255)

                                                                                       tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc         >  1:2486909/1‑100 (MQ=255)

                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgcg        >  2:792631/1‑100 (MQ=255)

                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgag        >  1:1551739/1‑98 (MQ=255)

                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg          >  1:845387/1‑98 (MQ=255)

                                                                                         gACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTACCAGACACCAAAAGGATGATCgcgc       >  1:636111/1‑100 (MQ=255)

                                                                                          aCAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCgcgc       >  1:2281856/1‑99 (MQ=255)

                                                                                           cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc     <  1:2747357/100‑1 (MQ=255)

                                                                                            aaTTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGTGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctct    <  2:2321579/100‑1 (MQ=255)

                                                                                            aaTTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctct    >  1:571114/1‑100 (MQ=255)

                                                                                            aaTTTATCCATGATTAGACGACAGTGGGCCGGTGACTCTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctct    >  1:1346235/1‑100 (MQ=255)

                                                                                             aTTTATCCATGATTAGACGACAGTGGGCCGGTCACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCtt   >  1:2884029/1‑100 (MQ=255)

                                                                                              tttATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCttt  <  1:2502153/100‑1 (MQ=255)

ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTTT  >  NC_000913/1881031‑1881224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A