Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,881,128 C→A 100% E228* (GAA→TAA)  dmlR ← transcriptional activator of dmlA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,881,1280CA99.7% 303.3 / ‑6.7 94E228* (GAA→TAA) dmlRtranscriptional activator of dmlA
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base A (49/43);  total (51/43)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTC  >  NC_000913/1881031‑1881221
                                                                                                 |                                                                                             
aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc                                                                                             <  1:2237137/100‑1 (MQ=255)
 cTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATcc                                                                                            >  2:1280905/1‑100 (MQ=255)
    gCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATg                                                                                         >  1:1090657/1‑100 (MQ=255)
      aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAt                                                                                       <  1:1828767/100‑1 (MQ=255)
        tAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTa                                                                                     >  1:2469949/1‑100 (MQ=255)
         aaaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg                                                                                    >  1:1052341/1‑100 (MQ=255)
          aaTTACCACTGGTAATGTTTTCGCTAATATCCCACCTGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg                                                                                    <  1:1491686/99‑1 (MQ=255)
           aTGACCACTGGCAGTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgac                                                                                  <  2:1283005/100‑1 (MQ=255)
            tGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacg                                                                                 >  1:2223951/1‑100 (MQ=255)
              aCCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacgac                                                                               <  1:77094/100‑1 (MQ=255)
              aCCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacgac                                                                               <  1:1618981/100‑1 (MQ=255)
              aCCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacgac                                                                               <  1:1618903/100‑1 (MQ=255)
                 aCTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACCCCACTGACGGACAATTTCTCCATGATTAGACGACAg                                                                             >  2:774069/1‑99 (MQ=255)
                 aCTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGt                                                                            <  1:751856/100‑1 (MQ=255)
                  cTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTg                                                                           <  2:469142/100‑1 (MQ=255)
                   tGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTgg                                                                          <  1:1362562/100‑1 (MQ=255)
                      cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc                                                                       >  1:1939639/1‑100 (MQ=255)
                      cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc                                                                       >  1:723091/1‑100 (MQ=255)
                        aTGTTTTCGCTAACATCCCACCATGAACGCATAGCAATCTCCTGACCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCg                                                                      <  2:614665/99‑1 (MQ=255)
                          gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg                                                                   <  2:1834948/100‑1 (MQ=255)
                          gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg                                                                   >  1:1836550/1‑100 (MQ=255)
                          gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg                                                                   <  1:608914/100‑1 (MQ=255)
                          gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATACCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAAACGACAGTg                                                                           >  2:1049489/1‑92 (MQ=255)
                            tttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGAc                                                                 <  1:196875/100‑1 (MQ=255)
                             ttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCTTGATTAGACGACAGTGGGCCGGt                                                                    >  2:2551708/1‑96 (MQ=255)
                                gCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTa                                                             >  2:1235367/1‑100 (MQ=255)
                                 cTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGGCAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTaa                                                            >  2:2338187/1‑100 (MQ=255)
                                 cTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACttt                                                              >  2:1706889/1‑98 (MQ=255)
                                 cTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTaa                                                            >  1:1765023/1‑100 (MQ=255)
                                   aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc                                                          <  2:205681/100‑1 (MQ=255)
                                   aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc                                                          <  2:1052333/100‑1 (MQ=255)
                                     cATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTATACGACAGTGGGCCGGTGACTTTAATCGc                                                        >  2:697048/1‑100 (MQ=255)
                                     cATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGc                                                        <  2:910235/100‑1 (MQ=255)
                                      aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa                                                       >  1:14813/1‑100 (MQ=255)
                                        cccACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGTTTCGACGACAGTGCGCGAGACACTATAATCGCATg                                                     >  2:2283528/1‑100 (MQ=255)
                                         ccaccaGGAACTCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACGTTAATCGCa                                                       <  2:881648/97‑1 (MQ=255)
                                         ccaccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgg                                                    >  1:920219/1‑100 (MQ=255)
                                         ccaccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgg                                                    >  1:1469364/1‑100 (MQ=255)
                                          caccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggg                                                   >  2:1892696/1‑100 (MQ=255)
                                            ccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGAGCCGGTGACTTTAATCGCATgg                                                    >  2:1952289/1‑97 (MQ=255)
                                             caGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGc                                                >  1:2289027/1‑100 (MQ=255)
                                             caGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGc                                                >  1:1221259/1‑100 (MQ=255)
                                                gAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGAGGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCctt                                             >  2:1422818/1‑100 (MQ=255)
                                                 aaCGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgggggn                                                <  2:1562921/96‑2 (MQ=255)
                                                 aaCGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttc                                            <  1:1235375/100‑1 (MQ=255)
                                                  aCGCAGAGCAATCCCCTGCCCATCGAGACACCACTCATGGACAATTTATCCATGACTAGACGCCACTTGGCCGGTGACCTTAATCGCATAAGGGCcttct                                           >  2:1115429/1‑100 (MQ=255)
                                                   cGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttctt                                          <  1:1390700/100‑1 (MQ=255)
                                                   cGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttctt                                          >  1:1612359/1‑100 (MQ=255)
                                                   cGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttctt                                          <  1:1276395/100‑1 (MQ=255)
                                                    gCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCttt                                         >  1:801499/1‑100 (MQ=255)
                                                    gCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCttt                                         >  1:393744/1‑100 (MQ=255)
                                                     cAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTa                                        >  2:1387795/1‑100 (MQ=255)
                                                      agagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAt                                       <  1:1399898/100‑1 (MQ=255)
                                                       gagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAtt                                      <  1:1969360/100‑1 (MQ=255)
                                                        agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg                                     <  2:172399/100‑1 (MQ=255)
                                                        agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg                                     <  2:2081026/100‑1 (MQ=255)
                                                        agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg                                     <  1:1589622/100‑1 (MQ=255)
                                                        agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg                                     <  1:771325/100‑1 (MQ=255)
                                                         gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAtt                                      >  1:699581/1‑98 (MQ=255)
                                                         gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGc                                    <  2:1899729/100‑1 (MQ=255)
                                                           aaTCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGCCAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGt                                  <  2:1275048/100‑1 (MQ=255)
                                                           aaTCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGt                                  <  2:1384785/100‑1 (MQ=255)
                                                           aaTCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGt                                  <  2:1765010/100‑1 (MQ=255)
                                                              ccccTGCCCATCGAGACACCACTGATGGACAATTTCTCCATCATTAGACGCCAGTGGGCCGGTGACTTTAATCGCTTGGCGGCCTTCTTTATTGCg                                   >  2:2018125/1‑96 (MQ=255)
                                                              ccccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAAt                               >  1:685785/1‑100 (MQ=255)
                                                              ccccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGCCCGGTGACTGTAATCGCATGGGGGCCTTCTTTATTGCGTAAt                               >  2:1799648/1‑100 (MQ=255)
                                                               cccTGCCCATCGAGACACCACTGATGGCCAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAAtt                              >  2:903998/1‑100 (MQ=255)
                                                               cccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAAtt                              >  1:1487157/1‑100 (MQ=255)
                                                                ccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTg                             <  1:1978564/100‑1 (MQ=255)
                                                                ccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTg                             >  2:1341285/1‑100 (MQ=255)
                                                                 cTGCCCATCGAGACACCACTGATGGAGAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGc                            <  2:2130536/100‑1 (MQ=255)
                                                                  tGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGcc                           <  2:2140791/100‑1 (MQ=255)
                                                                  tGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGcc                           <  1:1103819/100‑1 (MQ=255)
                                                                   gCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCa                          >  1:1122554/1‑100 (MQ=255)
                                                                   gCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCa                          <  2:2469935/100‑1 (MQ=255)
                                                                      cATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGac                       <  2:1969570/100‑1 (MQ=255)
                                                                       aTCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGaca                      >  1:2157655/1‑100 (MQ=255)
                                                                         cGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACAcc                    <  1:2040670/100‑1 (MQ=255)
                                                                         cGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACAcc                    >  2:1869370/1‑100 (MQ=255)
                                                                          gagaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCa                   >  1:1299564/1‑100 (MQ=255)
                                                                              caccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAg               <  2:1939625/100‑1 (MQ=255)
                                                                              caccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAg               <  1:1554611/100‑1 (MQ=255)
                                                                               accacTGATGGACAATTTATCCATGATTAGACGACAGCGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAgg              >  2:814916/1‑100 (MQ=255)
                                                                                ccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGga             >  1:2366213/1‑100 (MQ=255)
                                                                                 cacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgat            >  2:262924/1‑100 (MQ=255)
                                                                                    tGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatgat         <  1:346886/100‑1 (MQ=255)
                                                                                     gATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTGTTTATTGCGTAATTGCCAGACACCAAAAGga             >  2:1097760/1‑95 (MQ=255)
                                                                                      aTGGACAGTTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg       >  1:1341667/1‑100 (MQ=255)
                                                                                       tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc      >  2:632056/1‑100 (MQ=255)
                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgcg     >  1:1756221/1‑100 (MQ=255)
                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgcg     >  1:1952779/1‑100 (MQ=255)
                                                                                        ggACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgcg     >  1:2133103/1‑100 (MQ=255)
                                                                                         gACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCgcgc    <  1:68571/100‑1 (MQ=255)
                                                                                         gACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCgcgc    >  1:816107/1‑100 (MQ=255)
                                                                                           cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc  <  2:393740/100‑1 (MQ=255)
                                                                                                 |                                                                                             
ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTC  >  NC_000913/1881031‑1881221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A