Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I1 R1
|
174 |
80.0 |
3892211 |
96.7% |
3763768 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,881,128 |
C→A |
E228* (GAA→TAA) |
dmlR ← |
transcriptional activator of dmlA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,881,128 | 0 | C | A | 93.8%
| 252.4
/ 9.4
| 81 | E228* (GAA→TAA) | dmlR | transcriptional activator of dmlA |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base A (39/37); total (42/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.33e-01 |
ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTT > NC_000913/1881031‑1881223
|
aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc < 2:1213920/100‑1 (MQ=255)
cACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGa > 1:1544170/1‑100 (MQ=255)
aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGAt > 2:1594907/1‑100 (MQ=255)
aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAt > 2:1638387/1‑100 (MQ=255)
cTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAtt > 1:295035/1‑100 (MQ=255)
aaaTGACCACTGGCAATGTTTTCGCTAACGTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg > 2:1683373/1‑100 (MQ=255)
aaaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg > 2:970053/1‑100 (MQ=255)
aaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCTATGATTAg > 2:1330306/1‑99 (MQ=255)
aTGACCACTGGCAATGTTTTCGCTAACATCGCACCAGGAACTCAGAGCAATCCCCTACCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgac < 1:750203/100‑1 (MQ=255)
aCCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacgac < 2:642664/100‑1 (MQ=255)
ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 2:127194/1‑100 (MQ=255)
ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 1:871184/1‑100 (MQ=255)
ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 1:1574660/1‑100 (MQ=255)
cTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTg > 2:1342302/1‑100 (MQ=255)
naaTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc > 2:1577261/2‑100 (MQ=255)
cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc > 1:51561/1‑100 (MQ=255)
cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 1:1476673/100‑1 (MQ=255)
cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 2:364436/100‑1 (MQ=255)
cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 2:1253457/100‑1 (MQ=255)
aTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCgg < 1:1297772/100‑1 (MQ=255)
aTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCgg < 2:1013898/100‑1 (MQ=255)
tGTTTTCGCTAACATCCCACCAGGAACGCGGAGCAATCCCCTGCCCATCGAGCCACCACTGATGGACAATTTATCCATCATTAGACGACaaggg > 1:1158383/1‑90 (MQ=255)
gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg > 2:1729710/1‑100 (MQ=255)
gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg > 1:636088/1‑100 (MQ=255)
gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg < 2:1414852/100‑1 (MQ=255)
gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCCAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGACCg > 1:337261/1‑97 (MQ=255)
tttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGAc < 1:35432/100‑1 (MQ=255)
ttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACt < 2:871185/100‑1 (MQ=255)
tCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACtt > 2:793037/1‑100 (MQ=255)
cGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACttt < 1:187223/100‑1 (MQ=255)
aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc < 2:1250053/100‑1 (MQ=255)
aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc < 1:1649062/100‑1 (MQ=255)
aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa < 1:1289656/100‑1 (MQ=255)
aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa < 2:382984/100‑1 (MQ=255)
tCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGAGGACAGTGGGCAGGTGACTTTAATCg > 1:1203/1‑97 (MQ=255)
tCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCAt < 1:47682/100‑1 (MQ=255)
caccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggg > 2:510718/1‑100 (MQ=255)
accaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACATTGGGCCGGTGACTTTAATCGCATgggg > 1:1022382/1‑100 (MQ=255)
accaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgggg > 2:642173/1‑100 (MQ=255)
aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:1469878/100‑1 (MQ=255)
aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:420826/100‑1 (MQ=255)
aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:1661570/100‑1 (MQ=255)
ggAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCct < 2:51561/100‑1 (MQ=255)
cGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttctt > 2:1302727/1‑100 (MQ=255)
cAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTa < 1:644072/100‑1 (MQ=255)
cAGAGCAATCCCCTGCCCATCGAGACACCACTGAGGGGCAATTTATCCATGATTAGGCGCCAGTGGGCCGGTTACTTTACTCGCATGGGAGCct > 1:510450/1‑94 (MQ=255)
agagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGTCGGGTGACTTTGATGGCATGGGGGCCTTCTTTAt > 1:1608566/1‑100 (MQ=255)
agagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAt < 2:530100/100‑1 (MQ=255)
nagCAATCTCCAGCCCATCGAGACACCACTGAGGGACAATTTATCCATGATTAGGCGACAGTGGGACGGAGACAATAATCACATGGCGGActtct > 1:163568/2‑95 (MQ=255)
agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 1:970052/100‑1 (MQ=255)
agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 2:114379/100‑1 (MQ=255)
agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 1:1479648/100‑1 (MQ=255)
gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAtt > 1:280365/1‑98 (MQ=255)
gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGCGGCCCGGTGACTTTAATCGCATAGGGGCCTTCGTTATTGc > 1:112779/1‑100 (MQ=255)
aTCCCCTGCCCATCCAAACACCACTGATTGACAATTTATCCATGATTAGACTACAGTGGGCCGGTTACTTTAATCGCATGGGCGCCTTCTTTATTGCGTa < 1:1531849/100‑1 (MQ=255)
cccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAAtt > 1:1461590/1‑100 (MQ=255)
ccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTg < 1:297906/100‑1 (MQ=255)
cccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAg < 2:295037/100‑1 (MQ=255)
cccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAg < 1:436352/100‑1 (MQ=255)
ccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGa < 1:1191530/100‑1 (MQ=255)
cATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGac < 1:112358/100‑1 (MQ=255)
cATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGac < 1:29711/100‑1 (MQ=255)
cGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGGGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGaca > 2:301998/1‑98 (MQ=255)
gagaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCa > 2:844324/1‑100 (MQ=255)
gaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaa > 1:1692262/1‑100 (MQ=255)
gaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaa > 1:774109/1‑100 (MQ=255)
acacCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaaa < 2:1303855/100‑1 (MQ=255)
caccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAg < 1:1209589/100‑1 (MQ=255)
accacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAgg < 2:1749091/100‑1 (MQ=255)
ccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGga > 1:1383799/1‑100 (MQ=255)
ccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTACCAGACACCaaaa > 1:137663/1‑97 (MQ=255)
cacTGATGGACAATTTCTCCATGATTAGACGCCAGTGGGCCGGTGACTTTAAGCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgat < 1:1594896/100‑1 (MQ=255)
acTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatg < 2:292870/100‑1 (MQ=255)
cTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatg > 1:666845/1‑99 (MQ=255)
aTGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg < 1:844323/100‑1 (MQ=255)
tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc > 1:1912765/1‑100 (MQ=255)
tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc > 2:66267/1‑100 (MQ=255)
tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc < 2:1574671/100‑1 (MQ=255)
gACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCgcgc > 2:708695/1‑100 (MQ=255)
cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc > 2:182845/1‑100 (MQ=255)
cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc > 1:1868108/1‑100 (MQ=255)
aTTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGAGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCtt > 1:662652/1‑100 (MQ=255)
|
ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTT > NC_000913/1881031‑1881223
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
