Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,805,475 T→C 100% N159S (AAT→AGT)  waaP ← kinase that phosphorylates core heptose of lipopolysaccharide

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,805,4750TC99.0% 335.6 / ‑5.8 99N159S (AAT→AGT) waaPkinase that phosphorylates core heptose of lipopolysaccharide
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (44/53);  total (45/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGTGCCCGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGATTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGCCCAATC  >  NC_000913/3805376‑3805569
                                                                                                   |                                                                                              
ttagCCAGATGCAGATCGATAACTGAAATTTTTAATGCATCTTGCCGGGCAGTAGATGGCAAATGAGGCAAAAAGTGGCAAATGTAACAGTCGCGGTGAt                                                                                                <  2:2200841/97‑1 (MQ=255)
   gCCCGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTa                                                                                             >  1:1055149/1‑100 (MQ=255)
   gCCCGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTa                                                                                             <  1:1517308/100‑1 (MQ=255)
   gCCCGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTa                                                                                             >  1:1505477/1‑100 (MQ=255)
    cccGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTAt                                                                                            >  1:446927/1‑100 (MQ=255)
     ccGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATc                                                                                           >  1:755072/1‑100 (MQ=255)
     ccGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATc                                                                                           >  2:173828/1‑100 (MQ=255)
       gATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATccc                                                                                         <  1:1431372/100‑1 (MQ=255)
         tGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTg                                                                                       <  1:2141664/100‑1 (MQ=255)
           cAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCGAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCa                                                                                     >  2:1576570/1‑100 (MQ=255)
           cAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCa                                                                                     >  1:723574/1‑100 (MQ=255)
           cAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCa                                                                                     >  2:1259930/1‑100 (MQ=255)
             gATCGATAACTGAAATTTTTAATTCATCTTCCCGGTCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAAAAGTCGCGGTGACGTATCCCTGGAGt                                                                                   >  2:1474114/1‑100 (MQ=255)
             gATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGt                                                                                   <  2:2454345/100‑1 (MQ=255)
              aTCGATAATTGAATTTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAACAAAAAGTGGCAAATGTCACACTCGCGCTGATTTATCCCTGCat                                                                                    <  2:884163/98‑2 (MQ=255)
              aTCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTa                                                                                  >  2:1352924/1‑100 (MQ=255)
                cGATAACTGAAATTTTTAATTCATCTTCCCGGCAAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATg                                                                                >  1:895448/1‑100 (MQ=255)
                 gATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGCCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGc                                                                               >  2:1946538/1‑100 (MQ=255)
                    aaCTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCAtt                                                                            <  2:1849953/100‑1 (MQ=255)
                     aCTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCAttt                                                                           <  2:37564/100‑1 (MQ=255)
                      ntGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCAtttt                                                                          >  2:1715874/2‑100 (MQ=255)
                      cTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCAtttt                                                                          >  1:698452/1‑100 (MQ=255)
                      cTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCAtttt                                                                          >  2:1745957/1‑100 (MQ=255)
                       tGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTa                                                                         <  1:266779/100‑1 (MQ=255)
                        gAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTAc                                                                        >  2:936909/1‑100 (MQ=255)
                         aaaTTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACg                                                                       <  2:1246631/100‑1 (MQ=255)
                          aaTTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGc                                                                      >  2:1453782/1‑100 (MQ=255)
                           aTTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCa                                                                     <  1:861350/100‑1 (MQ=255)
                            tttttAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCAc                                                                    >  1:893801/1‑100 (MQ=255)
                             ttttAATACACCTTCCCGGGCAGTAAATGTCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCAc                                                                    <  2:2430901/99‑1 (MQ=255)
                             gtacgacccATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCAcc                                                                   <  2:814093/92‑1 (MQ=255)
                                  aTTCATCTACCCGGCCCGTAAATGGCAAATGAAGCAAAAAGAGGCAACTGTAACAGTCGCGGAGACTTATCCCTGCAGTATGCATTTTACTCACCATAGt                                                              >  2:1109130/1‑100 (MQ=255)
                                     cATGTTCCCGGCCAGAAAATGGCAAATGAAGCAAAAAGGAGCAAATGTAACAGTCGCGGCGACTTATCCCTGCCGTATGCATTTTACGCACCATAGtt                                                             >  2:330351/1‑98 (MQ=255)
                                     cATCTTCCCGGCCAGTAAATGGCAAATTAAGTAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTg                                                            <  2:149842/99‑1 (MQ=255)
                                     cATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGc                                                           <  2:2517292/100‑1 (MQ=255)
                                     cATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGc                                                           <  2:2039653/100‑1 (MQ=255)
                                     cATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGc                                                           <  1:561733/100‑1 (MQ=255)
                                      aTCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACTATAGTTGCt                                                          >  2:1488409/1‑100 (MQ=255)
                                      aTCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCt                                                          <  2:953578/100‑1 (MQ=255)
                                       tCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTa                                                         <  1:1441391/100‑1 (MQ=255)
                                        cTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTac                                                        <  1:2263720/100‑1 (MQ=255)
                                         ttCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTaca                                                       >  1:1832438/1‑100 (MQ=255)
                                           cccGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACg                                                     <  1:561239/100‑1 (MQ=255)
                                           cccGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACg                                                     >  1:1275663/1‑100 (MQ=255)
                                            ccGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGt                                                    >  1:2400965/1‑100 (MQ=255)
                                              ggCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGc                                                  <  1:245751/100‑1 (MQ=255)
                                              ggCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGc                                                  <  1:2253944/100‑1 (MQ=255)
                                              ggCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGc                                                  <  2:1575635/100‑1 (MQ=255)
                                                ncAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGa                                                >  2:547450/2‑100 (MQ=255)
                                                 cAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGAt                                               <  1:1240284/100‑1 (MQ=255)
                                                 cAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGAt                                               <  1:1248263/100‑1 (MQ=255)
                                                  aGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATc                                              <  1:161038/100‑1 (MQ=255)
                                                  aGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATc                                              >  2:1483077/1‑100 (MQ=255)
                                                   gTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCg                                                 >  2:1592837/1‑96 (MQ=255)
                                                   gTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCa                                             <  1:1004591/100‑1 (MQ=255)
                                                    tAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAg                                            >  1:1744803/1‑100 (MQ=255)
                                                    tAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAg                                            <  1:1657592/100‑1 (MQ=255)
                                                     aaaTGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGc                                           <  1:1634778/100‑1 (MQ=255)
                                                     aaaTAGCAAATGAAGCAAAAAGTGGCAAATGTAAGAGACGCGGTGACTTATCCCTGGATTATGCAGTTTACGCACCATAGTTGCTACACGTGCGATCAGc                                           <  2:358072/100‑1 (MQ=255)
                                                      aaTGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCa                                          >  1:52895/1‑100 (MQ=255)
                                                      aaTGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCa                                          <  1:1714940/100‑1 (MQ=255)
                                                       aTGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCAt                                         <  1:936917/100‑1 (MQ=255)
                                                        tGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATa                                        >  1:1094199/1‑100 (MQ=255)
                                                           cAAATGAGGCAAAAAGTGGCAAATGTAACAGTCGCGTTGATGAATCACTCCAGAATTCATTTTATGCACCATAGATGCTACACGTGCGATCAGCATatg                                      >  2:1876066/1‑97 (MQ=255)
                                                           cAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGc                                     >  1:818177/1‑100 (MQ=255)
                                                           cAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGc                                     >  1:2140886/1‑100 (MQ=255)
                                                            aaaTGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCt                                    <  1:1083346/100‑1 (MQ=255)
                                                            aaaTGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCt                                    >  1:615464/1‑100 (MQ=255)
                                                            aaaTGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCt                                    <  2:633318/100‑1 (MQ=255)
                                                              aTGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTa                                  >  2:409664/1‑100 (MQ=255)
                                                              aTGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTa                                  <  2:1310939/100‑1 (MQ=255)
                                                               tGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTaa                                 >  2:2210809/1‑100 (MQ=255)
                                                                gAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAac                                <  1:870225/100‑1 (MQ=255)
                                                                  aGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAacac                              >  2:717495/1‑100 (MQ=255)
                                                                  aGCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAacac                              <  1:513889/100‑1 (MQ=255)
                                                                   gCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACg                             <  1:1364135/100‑1 (MQ=255)
                                                                   gCAAAAAGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACg                             >  2:2112925/1‑100 (MQ=255)
                                                                     aaaaaGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGta                           >  1:1906665/1‑100 (MQ=255)
                                                                     aaaaaGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGta                           <  2:2471209/100‑1 (MQ=255)
                                                                     aaaaaGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGta                           <  2:1266250/100‑1 (MQ=255)
                                                                      aaaaGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGtat                          >  1:400524/1‑100 (MQ=255)
                                                                       aaaGTGGCAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGtata                         <  1:288834/100‑1 (MQ=255)
                                                                              cAAATGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCg                  >  1:1781848/1‑100 (MQ=255)
                                                                               aaaTGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCgg                 <  1:1910204/100‑1 (MQ=255)
                                                                                aaTGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCggg                <  1:381884/100‑1 (MQ=255)
                                                                                  tGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGtt              >  1:1174799/1‑100 (MQ=255)
                                                                                  tGTAACAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGtt              <  1:2048058/100‑1 (MQ=255)
                                                                                     aaCAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGAc           <  1:1702977/100‑1 (MQ=255)
                                                                                     aaCAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGAc           <  2:1887679/100‑1 (MQ=255)
                                                                                       cAGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTg         <  2:1361384/100‑1 (MQ=255)
                                                                                        aGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGc        >  1:402942/1‑100 (MQ=255)
                                                                                        aGTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCAACATAGTTGCTACACGTGGGATCAGCATACGCTTAACAAGTATATCAGGCGGGTTGACTGc        >  2:2169108/1‑100 (MQ=255)
                                                                                         gTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACt          <  2:1663323/97‑1 (MQ=255)
                                                                                         gTCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGcc       <  1:1389184/100‑1 (MQ=255)
                                                                                          tCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGccc      <  1:2506867/100‑1 (MQ=255)
                                                                                          tCGCGGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGccc      <  2:1505466/100‑1 (MQ=255)
                                                                                           cgcgGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGcccn     <  2:1275655/100‑2 (MQ=255)
                                                                                            gcgGTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGCCCa     >  1:1936546/1‑99 (MQ=255)
                                                                                              ggTGACTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGCCCAATc  <  2:446923/100‑1 (MQ=255)
                                                                                                tGACTTAGCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGCCCAATc  <  2:504052/98‑1 (MQ=255)
                                                                                                   |                                                                                              
TGTGCCCGATGCAGATCGATAACTGAAATTTTTAATTCATCTTCCCGGCCAGTAAATGGCAAATGAAGCAAAAAGTGGCAAATGTAACAGTCGCGGTGATTTATCCCTGCAGTATGCATTTTACGCACCATAGTTGCTACACGTGCGATCAGCATACGCTTAACACGTATATCAGGCGGGTTGACTGCCCAATC  >  NC_000913/3805376‑3805569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A