Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I0 R1
|
328 |
102.7 |
5123138 |
93.4% |
4785010 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,822,694 |
G→T |
100% |
G99W (GGG→TGG) |
spoT → |
bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,822,694 | 0 | G | T | 98.1%
| 340.7
/ ‑3.3
| 114 | G99W (GGG→TGG) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base G (3/0); new base T (58/52); total (62/52) |
| Fisher's exact test for biased strand distribution p-value = 2.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
GATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCG > NC_000913/3822597‑3822793
|
gATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtgg < 1:996267/100‑1 (MQ=255)
aTGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtggg < 1:1988166/100‑1 (MQ=255)
aTGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtggg < 1:1275878/100‑1 (MQ=255)
tGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgt > 1:541026/1‑100 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg < 1:668985/100‑1 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg < 1:524383/100‑1 (MQ=255)
ggcggcGCTGCTGCAGGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg < 1:1499056/100‑1 (MQ=255)
cgcTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGaa > 2:127167/1‑100 (MQ=255)
cgcTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTAGTAGAGTGGGTGTCGaa > 2:1432171/1‑100 (MQ=255)
gctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACtt > 2:133064/1‑100 (MQ=255)
gctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACtt < 1:299953/100‑1 (MQ=255)
ctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTg < 1:403346/100‑1 (MQ=255)
tgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGa > 1:1386484/1‑100 (MQ=255)
gcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGAt > 2:1326104/1‑100 (MQ=255)
gcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGAt < 1:338019/100‑1 (MQ=255)
aTGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTTTTTTTTTTTTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGCTa > 2:667492/1‑99 (MQ=255)
gACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAAc > 2:2486053/1‑100 (MQ=255)
gACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAAc > 2:354491/1‑100 (MQ=255)
ncGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACt > 2:1958105/2‑100 (MQ=255)
aCGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACt < 1:707200/100‑1 (MQ=255)
cGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTc < 1:2218206/100‑1 (MQ=255)
cGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTc < 1:2236257/100‑1 (MQ=255)
cGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTc > 1:233479/1‑100 (MQ=255)
gTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCa > 2:1071745/1‑100 (MQ=255)
tGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTTTTTTTTTTTTCACCGAGATGGTAGAGTGGGTATCTAATCTTGATAAACGCaa > 2:1771440/1‑100 (MQ=255)
tGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCaa < 2:396614/100‑1 (MQ=255)
tGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCaa > 1:1616591/1‑100 (MQ=255)
gATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAg > 1:342739/1‑100 (MQ=255)
gAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTcc > 2:1529099/1‑100 (MQ=255)
gAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTcc > 1:1502925/1‑100 (MQ=255)
aGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgc > 1:2245457/1‑100 (MQ=255)
aGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgc > 2:2257853/1‑100 (MQ=255)
aGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgc < 2:84835/100‑1 (MQ=255)
ggtACTCCCGCCGCCTACCAGGATATGGAACAGCTTGTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgc < 2:1162766/97‑1 (MQ=255)
gATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgcg < 1:127169/100‑1 (MQ=255)
tACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGAt > 2:796933/1‑100 (MQ=255)
cTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGTTGTCGAAACTTGATAAACTCAAGTTCcgcg < 2:32555/96‑1 (MQ=255)
cTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaa > 1:2483461/1‑100 (MQ=255)
cTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaa < 1:450786/100‑1 (MQ=255)
tCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaag > 2:2376643/1‑100 (MQ=255)
cccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaaga > 1:2304248/1‑100 (MQ=255)
ccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaa > 2:874834/1‑100 (MQ=255)
ccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaa > 2:2385843/1‑100 (MQ=255)
cACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCTAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAagag < 2:1637818/100‑1 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGATGGTAGAGTGTGAGTCGAAACGTGATAAACTCAAGTTCCGCGATAAGAAAGAgg < 2:2071311/100‑1 (MQ=255)
ccTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAagagac > 2:1556128/1‑98 (MQ=255)
cTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGgcg > 1:1571547/1‑100 (MQ=255)
ccAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAg > 2:85850/1‑100 (MQ=255)
gATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCg < 1:403604/100‑1 (MQ=255)
atatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGa > 2:2320703/1‑100 (MQ=255)
atatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGa < 1:1393575/100‑1 (MQ=255)
tatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaa > 1:1441215/1‑100 (MQ=255)
tatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaa < 1:575505/100‑1 (MQ=255)
tatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaa > 1:2485720/1‑100 (MQ=255)
tatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGCGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaa > 2:680997/1‑100 (MQ=255)
tGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaaaa > 2:1734734/1‑100 (MQ=255)
tGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaaaa < 1:1200737/100‑1 (MQ=255)
tGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGAGATAAGAAAGAGGCGCAGGCCGaaaa > 1:1974990/1‑100 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc > 2:1944152/1‑100 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc < 2:257905/100‑1 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc < 2:562832/100‑1 (MQ=255)
gAACAACCTTTTGGTAATCGCATCGCCGAGCTGGTAGAGTGCGTGTCGAAACTTTATATTCTCACGTTCCGTCATAATAAAGAGGCGCAGTCCg < 2:1720325/94‑1 (MQ=255)
aGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTcn < 1:1707600/100‑2 (MQ=255)
aGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCg < 2:124957/100‑1 (MQ=255)
gCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCCAGTTGCGCGATAAGAAGGAGCCGCAGGAAGAAAACtt > 2:2528233/1‑96 (MQ=255)
gCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGc > 1:10689/1‑100 (MQ=255)
cTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAATTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCa < 2:396770/100‑1 (MQ=255)
tttttGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCaa > 1:334594/1‑100 (MQ=255)
tatttGGTAAAAGGGTCGCCGAGCTGGTAGAATGGGTGTCGATACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCaa > 1:1730092/3‑100 (MQ=255)
ttttGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAg < 1:98990/100‑1 (MQ=255)
ttttGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAg > 2:1879654/1‑100 (MQ=255)
ttttGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAg > 2:922375/1‑100 (MQ=255)
gTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgatgat > 2:1883407/1‑100 (MQ=255)
gTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgatgat < 2:517691/100‑1 (MQ=255)
aaaaGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTa > 1:2097753/1‑100 (MQ=255)
aaaGCGTCGCCGGGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTAt > 1:539622/1‑100 (MQ=255)
aaaGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTAt > 2:1508798/1‑100 (MQ=255)
aGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTGGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATgg < 2:1766055/100‑1 (MQ=255)
gCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGc < 1:1965395/100‑1 (MQ=255)
gCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAAATTGATCAACTCCAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGc < 2:2059688/100‑1 (MQ=255)
cGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCg > 1:146834/1‑100 (MQ=255)
gTCGCCGAGCTGGCAGAGGGAGGGTCGAAACTTGATAAACTCAAGTTCCGCGGCAAGAGAGATGCGAAGACCAAAAACGTTCACAACATGAACATGGCGa > 2:2106766/1‑100 (MQ=255)
cGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGGCGGCCGAAAACTTTCGCAAGATGATTATGGCGATg > 1:94989/1‑100 (MQ=255)
cGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATg < 1:1167774/100‑1 (MQ=255)
ccGGGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt > 1:413953/1‑100 (MQ=255)
ccGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt > 1:1426/1‑100 (MQ=255)
gAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGc > 2:847256/1‑100 (MQ=255)
ngCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCa > 2:1514608/2‑100 (MQ=255)
aGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCa < 1:663232/100‑1 (MQ=255)
gCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAg > 1:1984106/1‑100 (MQ=255)
gCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAg < 2:2403694/100‑1 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa < 1:1071753/100‑1 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa > 1:208297/1‑100 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa < 1:2093942/100‑1 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa < 1:74963/100‑1 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa < 2:2043631/100‑1 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa > 2:1846280/1‑100 (MQ=255)
ggTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCTGAAAACGTTCGCAAGATGATTATGGCGATGGTGCAGGat > 2:1800790/1‑100 (MQ=255)
agagTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATc < 1:2527826/100‑1 (MQ=255)
ggggTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCcgcg < 1:922383/100‑1 (MQ=255)
|
GATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCG > NC_000913/3822597‑3822793
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
