Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I1 R1
|
186 |
136.5 |
6958264 |
92.1% |
6408561 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,822,694 |
G→T |
G99W (GGG→TGG) |
spoT → |
bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,822,694 | 0 | G | T | 94.6%
| 337.7
/ 9.6
| 115 | G99W (GGG→TGG) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base G (4/2); new base T (52/54); total (59/56) |
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 |
Only 100 of 118 total aligned reads displayed.
GATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATC > NC_000913/3822597‑3822789
|
gATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtgg < 1:2566775/100‑1 (MQ=255)
aTGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtggg < 1:2681671/100‑1 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAgtgg > 1:2331309/1‑97 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg < 2:3415055/100‑1 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg < 1:1282046/100‑1 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtg > 1:2694755/1‑100 (MQ=255)
ggcggcGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgt > 2:2147876/1‑99 (MQ=255)
gcggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGgtgt > 2:2040710/1‑100 (MQ=255)
cggcgTCGCTGCATGCCGTTAGTGAAGATGCTCTCGCCACCTGCCCGGATATGGAGCAGCGTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTc < 1:728556/100‑1 (MQ=255)
cggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTc > 1:1096859/1‑100 (MQ=255)
cggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTc > 2:2810294/1‑100 (MQ=255)
cggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTc < 1:2471948/100‑1 (MQ=255)
cggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTc > 1:2179680/1‑100 (MQ=255)
ggcgCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCg < 2:1889530/100‑1 (MQ=255)
cgcTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGaa > 2:1205728/1‑100 (MQ=255)
ctgctgCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAAc > 2:1267664/1‑100 (MQ=255)
tgctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACt < 1:1761853/100‑1 (MQ=255)
gctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGCGGGTGTCGAAACtt > 1:3197123/1‑100 (MQ=255)
ctgcATGACGTGATTGAAGATACTCCCGCCACCTCCCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTg < 1:1836638/100‑1 (MQ=255)
ctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTg < 1:485266/100‑1 (MQ=255)
ctgcATGACGTGATTGAAGATACTCCCGCAACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTg < 1:2279932/100‑1 (MQ=255)
tgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGa > 1:3232352/1‑100 (MQ=255)
tgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGa < 1:745654/100‑1 (MQ=255)
gcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGAt < 2:2780087/100‑1 (MQ=255)
gcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGAt > 1:1686362/1‑100 (MQ=255)
gACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAAc > 1:3409267/1‑100 (MQ=255)
aCGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACt < 1:2589821/100‑1 (MQ=255)
gTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCa < 1:3120032/100‑1 (MQ=255)
tGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCaa < 2:1535041/100‑1 (MQ=255)
aTTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGt < 1:223424/100‑1 (MQ=255)
aTTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTCTTTGGTAAAAGCGTCGCAGAGCTGGCAGAGTGGATGTCGAAACTTGATAAACTCAAg > 2:1575478/1‑99 (MQ=255)
tGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTc > 2:1771562/1‑100 (MQ=255)
tGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTc < 1:3087440/100‑1 (MQ=255)
gAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCGGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTcc > 1:2220862/1‑100 (MQ=255)
aGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgc > 1:166425/1‑100 (MQ=255)
gATACTCCCGCCACCTACCAGGATATGGAACAGTTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgcg < 2:573156/100‑1 (MQ=255)
gATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgcg < 2:2249057/100‑1 (MQ=255)
gATACTCCCGCCACCTACCAGCATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCcgcg < 1:856525/100‑1 (MQ=255)
aTACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGa < 2:3401768/100‑1 (MQ=255)
ncTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATa > 2:1995886/2‑100 (MQ=255)
attCCCCCCACCTACCAGGATAGGTTACAGCTTTTTAGTAAAACCGTCGCCGAGCTGTTAGAGTGGGTGTCGAAACTTGTTAAACTCAAGTTCCGCGATa < 1:1105752/98‑1 (MQ=255)
aCTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATa > 1:1960445/1‑100 (MQ=255)
aCTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATa > 1:1551991/1‑100 (MQ=255)
aCTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATa < 1:1771537/100‑1 (MQ=255)
cTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaa > 2:1720609/1‑100 (MQ=255)
cTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCGGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGGTCCGCGATaa > 1:3048976/1‑100 (MQ=255)
tCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaag < 2:42169/100‑1 (MQ=255)
cccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaaga < 1:634670/100‑1 (MQ=255)
ccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaa > 2:1959146/1‑100 (MQ=255)
ccGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaa < 1:885084/100‑1 (MQ=255)
cGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaaa < 2:2591531/100‑1 (MQ=255)
gCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATaagaaag < 2:2220894/100‑1 (MQ=255)
cgtcTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAagag < 2:3232404/97‑1 (MQ=255)
cACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAagag < 1:3421060/100‑1 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCTGCGATAAGAAAGAgg > 1:268080/1‑100 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAgg < 2:1365968/100‑1 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAgg < 1:871748/100‑1 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAgg < 1:2477436/100‑1 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAgg > 1:1094366/1‑100 (MQ=255)
aCCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAgg < 2:2583346/100‑1 (MQ=255)
ccTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGgc > 1:2849153/1‑100 (MQ=255)
cTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCAGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGgcg > 2:3293048/1‑100 (MQ=255)
aCCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCa < 2:1096873/100‑1 (MQ=255)
aGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGc > 2:805493/1‑100 (MQ=255)
natatGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCg > 2:1093028/2‑100 (MQ=255)
atGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaaa > 1:1339840/1‑100 (MQ=255)
tGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaaaa > 1:1946618/1‑100 (MQ=255)
tGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGaaaa < 2:546626/100‑1 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc < 2:1686385/100‑1 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc > 1:1585615/1‑100 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc > 1:3043340/1‑100 (MQ=255)
ggAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAAc > 2:203952/1‑100 (MQ=255)
gAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACt > 2:558949/1‑100 (MQ=255)
gCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGc < 1:3343321/100‑1 (MQ=255)
cTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCa < 2:1339859/100‑1 (MQ=255)
cTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCa < 1:1720586/100‑1 (MQ=255)
ttGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgat < 2:166427/100‑1 (MQ=255)
tGGTAAAAGCGTCGTCGAGCTGGTAGCGAGGGTGTCGAAACTTGATAAACTCAAGTTCCGAGATAAGCAACAGACGCAGGCCGAAGACTCCCACAAgat > 1:2979013/1‑99 (MQ=255)
tGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgatg < 2:3076983/100‑1 (MQ=255)
tGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAAATCAAGTTCAGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgatg > 1:3159586/1‑100 (MQ=255)
tAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGAtt > 2:1166157/1‑100 (MQ=255)
aaaaGCGTTCCCGAGCTGGTAGAGTGGGTTTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGCCGCGCAGGCTTAAAACTTTCGCAAgatgatca < 1:3321856/100‑3 (MQ=255)
aaaGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAAATTGAAAAGCTCAAGTACCGCGCTAAGAAAGAGGGACAGACAAAAAGCTATCGCAAGATGATTa > 1:3027307/1‑99 (MQ=255)
aGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATgg > 1:3266347/1‑100 (MQ=255)
aGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATgg < 1:1267647/100‑1 (MQ=255)
tCGCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGAt < 1:1748120/100‑1 (MQ=255)
gCCGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATgg > 1:1524374/1‑100 (MQ=255)
ccGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt > 2:25631/1‑100 (MQ=255)
ccGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt > 2:1658784/1‑100 (MQ=255)
ccGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt > 1:783930/1‑100 (MQ=255)
ccGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGt < 2:3409319/100‑1 (MQ=255)
cGAGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTg > 1:2864166/1‑100 (MQ=255)
aGCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCa < 2:1857643/100‑1 (MQ=255)
gCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAg < 2:3028583/100‑1 (MQ=255)
gCTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAg < 2:2887224/100‑1 (MQ=255)
cTGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAgg > 2:1361510/1‑100 (MQ=255)
tGGTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGa < 2:700730/100‑1 (MQ=255)
ggTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGat > 1:2811226/1‑100 (MQ=255)
ggTAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGat > 2:1104292/1‑100 (MQ=255)
tAGAGTGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGatat > 1:1547815/1‑100 (MQ=255)
|
GATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATC > NC_000913/3822597‑3822789
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
